Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04577

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04575 and MPMX19_04576 are separated by 34 nucleotidesMPMX19_04576 and MPMX19_04577 overlap by 4 nucleotidesMPMX19_04577 and MPMX19_04578 are separated by 4 nucleotides MPMX19_04575: MPMX19_04575 - Cystathionine gamma-synthase, at 953,998 to 955,122 _04575 MPMX19_04576: MPMX19_04576 - hypothetical protein, at 955,157 to 955,873 _04576 MPMX19_04577: MPMX19_04577 - putative glycosyltransferase, at 955,870 to 956,649 _04577 MPMX19_04578: MPMX19_04578 - dTDP-L-rhamnose 4-epimerase, at 956,654 to 957,721 _04578 Position (kb) 955 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 955.167 kb on + strandat 955.167 kb on + strandat 955.168 kb on - strandat 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.337 kb on + strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.338 kb on - strand, within MPMX19_04576at 955.590 kb on - strand, within MPMX19_04576at 955.590 kb on - strand, within MPMX19_04576at 955.661 kb on + strand, within MPMX19_04576at 955.661 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.724 kb on + strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.725 kb on - strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.748 kb on + strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 955.749 kb on - strand, within MPMX19_04576at 956.311 kb on + strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.312 kb on - strand, within MPMX19_04577at 956.395 kb on + strand, within MPMX19_04577at 956.395 kb on + strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.396 kb on - strand, within MPMX19_04577at 956.647 kb on + strandat 956.647 kb on + strandat 956.648 kb on - strandat 956.648 kb on - strandat 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.927 kb on + strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.928 kb on - strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 956.988 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.023 kb on + strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.024 kb on - strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.191 kb on + strand, within MPMX19_04578at 957.192 kb on - strand, within MPMX19_04578at 957.254 kb on - strand, within MPMX19_04578at 957.273 kb on - strand, within MPMX19_04578at 957.284 kb on + strand, within MPMX19_04578at 957.314 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.473 kb on + strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578at 957.474 kb on - strand, within MPMX19_04578

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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955,167 + -1.3
955,167 + -0.9
955,168 - +0.5
955,337 + MPMX19_04576 0.25 -0.0
955,337 + MPMX19_04576 0.25 -0.8
955,337 + MPMX19_04576 0.25 +0.7
955,337 + MPMX19_04576 0.25 -0.2
955,337 + MPMX19_04576 0.25 -1.1
955,337 + MPMX19_04576 0.25 -1.0
955,337 + MPMX19_04576 0.25 +1.4
955,337 + MPMX19_04576 0.25 -0.7
955,337 + MPMX19_04576 0.25 -0.6
955,337 + MPMX19_04576 0.25 -0.5
955,338 - MPMX19_04576 0.25 -0.5
955,338 - MPMX19_04576 0.25 -0.6
955,338 - MPMX19_04576 0.25 +0.3
955,338 - MPMX19_04576 0.25 -0.8
955,338 - MPMX19_04576 0.25 -0.2
955,338 - MPMX19_04576 0.25 -0.5
955,338 - MPMX19_04576 0.25 -0.9
955,338 - MPMX19_04576 0.25 -0.6
955,590 - MPMX19_04576 0.60 +1.0
955,590 - MPMX19_04576 0.60 -0.6
955,661 + MPMX19_04576 0.70 -0.6
955,661 + MPMX19_04576 0.70 -0.5
955,724 + MPMX19_04576 0.79 +1.0
955,724 + MPMX19_04576 0.79 -0.5
955,724 + MPMX19_04576 0.79 +0.1
955,724 + MPMX19_04576 0.79 +0.1
955,725 - MPMX19_04576 0.79 -1.7
955,725 - MPMX19_04576 0.79 -0.9
955,725 - MPMX19_04576 0.79 -2.5
955,748 + MPMX19_04576 0.82 -1.7
955,748 + MPMX19_04576 0.82 +0.1
955,748 + MPMX19_04576 0.82 -0.6
955,749 - MPMX19_04576 0.83 +0.6
955,749 - MPMX19_04576 0.83 -0.2
955,749 - MPMX19_04576 0.83 -1.9
955,749 - MPMX19_04576 0.83 -0.3
956,311 + MPMX19_04577 0.57 -0.5
956,312 - MPMX19_04577 0.57 -1.0
956,312 - MPMX19_04577 0.57 +0.6
956,312 - MPMX19_04577 0.57 -1.1
956,312 - MPMX19_04577 0.57 -2.9
956,395 + MPMX19_04577 0.67 -1.0
956,395 + MPMX19_04577 0.67 -1.4
956,396 - MPMX19_04577 0.67 +0.0
956,396 - MPMX19_04577 0.67 +0.4
956,396 - MPMX19_04577 0.67 -0.7
956,647 + -1.9
956,647 + -1.0
956,648 - -2.8
956,648 - -1.6
956,927 + MPMX19_04578 0.26 -0.5
956,927 + MPMX19_04578 0.26 +1.2
956,927 + MPMX19_04578 0.26 +0.8
956,927 + MPMX19_04578 0.26 -0.7
956,928 - MPMX19_04578 0.26 -2.2
956,928 - MPMX19_04578 0.26 -0.6
956,988 + MPMX19_04578 0.31 -1.2
956,988 + MPMX19_04578 0.31 +0.0
956,988 + MPMX19_04578 0.31 -0.2
957,023 + MPMX19_04578 0.35 -1.5
957,023 + MPMX19_04578 0.35 +0.1
957,023 + MPMX19_04578 0.35 +0.3
957,023 + MPMX19_04578 0.35 +0.6
957,023 + MPMX19_04578 0.35 -1.6
957,023 + MPMX19_04578 0.35 +1.4
957,024 - MPMX19_04578 0.35 +0.0
957,024 - MPMX19_04578 0.35 +0.8
957,024 - MPMX19_04578 0.35 -0.4
957,191 + MPMX19_04578 0.50 +3.8
957,191 + MPMX19_04578 0.50 -0.5
957,192 - MPMX19_04578 0.50 -0.2
957,254 - MPMX19_04578 0.56 -1.7
957,273 - MPMX19_04578 0.58 +0.5
957,284 + MPMX19_04578 0.59 -0.2
957,314 + MPMX19_04578 0.62 -2.4
957,473 + MPMX19_04578 0.77 +0.4
957,473 + MPMX19_04578 0.77 -1.2
957,473 + MPMX19_04578 0.77 -0.2
957,473 + MPMX19_04578 0.77 -1.3
957,474 - MPMX19_04578 0.77 -0.7
957,474 - MPMX19_04578 0.77 -2.4
957,474 - MPMX19_04578 0.77 -0.5
957,474 - MPMX19_04578 0.77 -0.6
957,474 - MPMX19_04578 0.77 -0.1
957,474 - MPMX19_04578 0.77 -0.6
957,474 - MPMX19_04578 0.77 -2.5

Or see this region's nucleotide sequence