Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04556

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04555 and MPMX19_04556 are separated by 63 nucleotidesMPMX19_04556 and MPMX19_04557 are separated by 546 nucleotides MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606 _04555 MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873 _04556 MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625 _04557 Position (kb) 935 936Strain fitness (log2 ratio) -2 -1 0 1 2at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.678 kb on + strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.679 kb on - strand, within MPMX19_04555at 934.993 kb on + strand, within MPMX19_04555at 934.993 kb on + strand, within MPMX19_04555at 934.993 kb on + strand, within MPMX19_04555at 934.993 kb on + strand, within MPMX19_04555at 934.993 kb on + strand, within MPMX19_04555at 934.994 kb on - strand, within MPMX19_04555at 934.994 kb on - strand, within MPMX19_04555at 934.994 kb on - strand, within MPMX19_04555at 934.994 kb on - strand, within MPMX19_04555at 935.203 kb on + strand, within MPMX19_04555at 935.203 kb on + strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.204 kb on - strand, within MPMX19_04555at 935.209 kb on + strand, within MPMX19_04555at 935.209 kb on + strand, within MPMX19_04555at 935.209 kb on + strand, within MPMX19_04555at 935.210 kb on - strand, within MPMX19_04555at 935.210 kb on - strand, within MPMX19_04555at 935.212 kb on + strand, within MPMX19_04555at 935.212 kb on + strand, within MPMX19_04555at 935.213 kb on - strand, within MPMX19_04555at 935.213 kb on - strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.218 kb on + strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.219 kb on - strand, within MPMX19_04555at 935.233 kb on + strandat 935.233 kb on + strandat 935.410 kb on + strandat 935.410 kb on + strandat 935.410 kb on + strandat 935.410 kb on + strandat 935.411 kb on - strandat 935.411 kb on - strandat 935.411 kb on - strandat 935.411 kb on - strandat 935.437 kb on + strandat 935.437 kb on + strandat 935.438 kb on - strandat 935.642 kb on + strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.643 kb on - strandat 935.791 kb on + strand, within MPMX19_04556at 935.889 kb on + strandat 935.889 kb on + strandat 935.890 kb on - strandat 935.924 kb on - strandat 935.982 kb on + strandat 935.983 kb on - strandat 936.026 kb on + strandat 936.034 kb on + strandat 936.035 kb on - strandat 936.035 kb on - strandat 936.331 kb on + strandat 936.331 kb on + strandat 936.331 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on + strandat 936.333 kb on - strandat 936.334 kb on - strandat 936.334 kb on - strandat 936.334 kb on - strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.335 kb on + strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.336 kb on - strandat 936.386 kb on - strandat 936.419 kb on + strandat 936.420 kb on - strandat 936.564 kb on + strand, within MPMX19_04557at 936.564 kb on + strand, within MPMX19_04557at 936.565 kb on - strand, within MPMX19_04557at 936.565 kb on - strand, within MPMX19_04557at 936.585 kb on + strand, within MPMX19_04557at 936.585 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.762 kb on + strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557at 936.763 kb on - strand, within MPMX19_04557

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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934,678 + MPMX19_04555 0.76 +0.3
934,678 + MPMX19_04555 0.76 -0.4
934,678 + MPMX19_04555 0.76 -0.7
934,678 + MPMX19_04555 0.76 -0.7
934,678 + MPMX19_04555 0.76 -0.7
934,678 + MPMX19_04555 0.76 -1.0
934,678 + MPMX19_04555 0.76 +0.3
934,678 + MPMX19_04555 0.76 +0.5
934,679 - MPMX19_04555 0.76 -0.6
934,679 - MPMX19_04555 0.76 +0.3
934,679 - MPMX19_04555 0.76 +0.3
934,679 - MPMX19_04555 0.76 -0.7
934,679 - MPMX19_04555 0.76 +0.3
934,679 - MPMX19_04555 0.76 -2.5
934,679 - MPMX19_04555 0.76 +0.5
934,993 + MPMX19_04555 0.84 +0.3
934,993 + MPMX19_04555 0.84 -1.2
934,993 + MPMX19_04555 0.84 -2.1
934,993 + MPMX19_04555 0.84 +0.7
934,993 + MPMX19_04555 0.84 +1.1
934,994 - MPMX19_04555 0.84 -1.0
934,994 - MPMX19_04555 0.84 +0.1
934,994 - MPMX19_04555 0.84 +0.6
934,994 - MPMX19_04555 0.84 -0.1
935,203 + MPMX19_04555 0.89 -0.3
935,203 + MPMX19_04555 0.89 +0.6
935,204 - MPMX19_04555 0.89 -1.0
935,204 - MPMX19_04555 0.89 -1.7
935,204 - MPMX19_04555 0.89 -0.3
935,204 - MPMX19_04555 0.89 -0.6
935,204 - MPMX19_04555 0.89 -1.7
935,204 - MPMX19_04555 0.89 -0.1
935,204 - MPMX19_04555 0.89 +1.0
935,204 - MPMX19_04555 0.89 -0.7
935,204 - MPMX19_04555 0.89 -1.1
935,209 + MPMX19_04555 0.90 -1.5
935,209 + MPMX19_04555 0.90 -1.4
935,209 + MPMX19_04555 0.90 -1.0
935,210 - MPMX19_04555 0.90 +0.2
935,210 - MPMX19_04555 0.90 -1.5
935,212 + MPMX19_04555 0.90 -0.4
935,212 + MPMX19_04555 0.90 +0.2
935,213 - MPMX19_04555 0.90 -1.3
935,213 - MPMX19_04555 0.90 -0.6
935,218 + MPMX19_04555 0.90 -0.6
935,218 + MPMX19_04555 0.90 -1.7
935,218 + MPMX19_04555 0.90 +0.6
935,218 + MPMX19_04555 0.90 -0.2
935,218 + MPMX19_04555 0.90 +0.6
935,218 + MPMX19_04555 0.90 +0.3
935,218 + MPMX19_04555 0.90 -1.9
935,219 - MPMX19_04555 0.90 -0.7
935,219 - MPMX19_04555 0.90 +0.6
935,219 - MPMX19_04555 0.90 -1.5
935,219 - MPMX19_04555 0.90 +0.8
935,219 - MPMX19_04555 0.90 -1.5
935,219 - MPMX19_04555 0.90 -0.8
935,233 + -0.5
935,233 + +0.3
935,410 + -0.4
935,410 + -0.7
935,410 + -1.0
935,410 + -0.9
935,411 - +0.0
935,411 - -0.7
935,411 - -1.0
935,411 - +1.4
935,437 + -1.2
935,437 + +0.5
935,438 - -0.1
935,642 + -0.2
935,643 - -0.5
935,643 - -0.5
935,643 - -1.2
935,643 - -1.0
935,791 + MPMX19_04556 0.59 -0.9
935,889 + +0.2
935,889 + +1.0
935,890 - -1.9
935,924 - -0.6
935,982 + +0.8
935,983 - -1.5
936,026 + -0.5
936,034 + -0.1
936,035 - -0.4
936,035 - -1.6
936,331 + +0.1
936,331 + -0.6
936,331 + -1.2
936,333 + -0.7
936,333 + -1.0
936,333 + -2.0
936,333 + -1.5
936,333 + -1.2
936,333 + +0.8
936,333 + -0.7
936,333 - +0.3
936,334 - -1.4
936,334 - +0.3
936,334 - -0.9
936,335 + +0.0
936,335 + -0.9
936,335 + -1.2
936,335 + -0.0
936,335 + +0.3
936,335 + -0.2
936,336 - -0.8
936,336 - -1.0
936,336 - -1.0
936,336 - -0.1
936,336 - +0.4
936,386 - +1.0
936,419 + +0.4
936,420 - -1.5
936,564 + MPMX19_04557 0.12 -0.2
936,564 + MPMX19_04557 0.12 -1.2
936,565 - MPMX19_04557 0.12 -0.2
936,565 - MPMX19_04557 0.12 +0.6
936,585 + MPMX19_04557 0.14 -1.6
936,585 + MPMX19_04557 0.14 -1.5
936,762 + MPMX19_04557 0.28 -0.6
936,762 + MPMX19_04557 0.28 -0.2
936,762 + MPMX19_04557 0.28 +0.4
936,762 + MPMX19_04557 0.28 -0.5
936,762 + MPMX19_04557 0.28 +0.8
936,762 + MPMX19_04557 0.28 +0.3
936,762 + MPMX19_04557 0.28 -0.2
936,762 + MPMX19_04557 0.28 -1.3
936,762 + MPMX19_04557 0.28 -0.3
936,762 + MPMX19_04557 0.28 -0.2
936,762 + MPMX19_04557 0.28 -0.2
936,763 - MPMX19_04557 0.28 +1.0
936,763 - MPMX19_04557 0.28 -0.5
936,763 - MPMX19_04557 0.28 -2.1
936,763 - MPMX19_04557 0.28 +0.8
936,763 - MPMX19_04557 0.28 +0.3
936,763 - MPMX19_04557 0.28 +2.0
936,763 - MPMX19_04557 0.28 -0.5

Or see this region's nucleotide sequence