Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04554 and MPMX19_04555 are separated by 410 nucleotides MPMX19_04555 and MPMX19_04556 are separated by 63 nucleotides MPMX19_04556 and MPMX19_04557 are separated by 546 nucleotides
MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371
_04554
MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606
_04555
MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873
_04556
MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625
_04557
Position (kb) 931
932
933
934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 930.860 kb on + strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.861 kb on - strand, within MPMX19_04554 at 930.932 kb on - strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.996 kb on + strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 930.997 kb on - strand, within MPMX19_04554 at 931.310 kb on + strand at 931.310 kb on + strand at 931.310 kb on + strand at 931.503 kb on + strand at 931.504 kb on - strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.530 kb on + strand at 931.531 kb on - strand at 931.531 kb on - strand at 931.532 kb on + strand at 931.532 kb on + strand at 931.532 kb on + strand at 931.533 kb on - strand at 931.533 kb on - strand at 931.533 kb on - strand at 931.570 kb on + strand at 931.570 kb on + strand at 931.570 kb on + strand at 931.573 kb on + strand at 931.573 kb on + strand at 931.573 kb on + strand at 931.574 kb on - strand at 931.675 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.900 kb on + strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 931.901 kb on - strand at 932.293 kb on + strand, within MPMX19_04555 at 932.294 kb on - strand, within MPMX19_04555 at 932.294 kb on - strand, within MPMX19_04555 at 932.759 kb on + strand, within MPMX19_04555 at 932.760 kb on - strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.406 kb on + strand, within MPMX19_04555 at 933.407 kb on - strand, within MPMX19_04555 at 933.407 kb on - strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.661 kb on + strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 933.662 kb on - strand, within MPMX19_04555 at 934.157 kb on + strand, within MPMX19_04555 at 934.158 kb on - strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.159 kb on + strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.160 kb on - strand, within MPMX19_04555 at 934.176 kb on + strand, within MPMX19_04555 at 934.176 kb on + strand, within MPMX19_04555 at 934.177 kb on - strand, within MPMX19_04555 at 934.256 kb on - strand, within MPMX19_04555 at 934.615 kb on + strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.616 kb on - strand, within MPMX19_04555 at 934.646 kb on + strand, within MPMX19_04555 at 934.647 kb on - strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.678 kb on + strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.679 kb on - strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.993 kb on + strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 934.994 kb on - strand, within MPMX19_04555 at 935.203 kb on + strand, within MPMX19_04555 at 935.203 kb on + strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.204 kb on - strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.209 kb on + strand, within MPMX19_04555 at 935.210 kb on - strand, within MPMX19_04555 at 935.210 kb on - strand, within MPMX19_04555 at 935.212 kb on + strand, within MPMX19_04555 at 935.212 kb on + strand, within MPMX19_04555 at 935.213 kb on - strand, within MPMX19_04555 at 935.213 kb on - strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.218 kb on + strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.219 kb on - strand, within MPMX19_04555 at 935.233 kb on + strand at 935.233 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.410 kb on + strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.411 kb on - strand at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.642 kb on + strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.791 kb on + strand, within MPMX19_04556 at 935.889 kb on + strand at 935.889 kb on + strand at 935.890 kb on - strand at 935.924 kb on - strand at 935.982 kb on + strand at 935.983 kb on - strand at 936.026 kb on + strand at 936.034 kb on + strand at 936.035 kb on - strand at 936.035 kb on - strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.386 kb on - strand at 936.419 kb on + strand at 936.420 kb on - strand at 936.564 kb on + strand, within MPMX19_04557 at 936.564 kb on + strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 930,860 + MPMX19_04554 0.29 -1.0 930,861 - MPMX19_04554 0.29 -0.2 930,861 - MPMX19_04554 0.29 -0.6 930,861 - MPMX19_04554 0.29 -1.0 930,861 - MPMX19_04554 0.29 -1.2 930,932 - MPMX19_04554 0.39 -0.5 930,996 + MPMX19_04554 0.48 -0.2 930,996 + MPMX19_04554 0.48 +0.3 930,996 + MPMX19_04554 0.48 -1.5 930,997 - MPMX19_04554 0.48 -1.7 930,997 - MPMX19_04554 0.48 -0.3 930,997 - MPMX19_04554 0.48 +0.8 930,997 - MPMX19_04554 0.48 -0.7 930,997 - MPMX19_04554 0.48 +1.1 930,997 - MPMX19_04554 0.48 +0.3 931,310 + -0.5 931,310 + -0.4 931,310 + -1.5 931,503 + -0.6 931,504 - +0.5 931,530 + +0.2 931,530 + -0.2 931,530 + -0.3 931,530 + -1.1 931,531 - -0.2 931,531 - -1.2 931,532 + -1.9 931,532 + +0.3 931,532 + -1.0 931,533 - +0.3 931,533 - -1.5 931,533 - -1.7 931,570 + +1.3 931,570 + +0.6 931,570 + +0.3 931,573 + +0.3 931,573 + -0.1 931,573 + -0.2 931,574 - -3.3 931,675 + +0.6 931,900 + -1.6 931,900 + -0.1 931,900 + -0.2 931,900 + -0.4 931,900 + -1.2 931,900 + -0.2 931,900 + -0.7 931,900 + +0.4 931,900 + +0.4 931,901 - -1.0 931,901 - +0.3 931,901 - -1.5 931,901 - +0.5 931,901 - +0.6 931,901 - +0.1 932,293 + MPMX19_04555 0.13 +0.4 932,294 - MPMX19_04555 0.13 -1.0 932,294 - MPMX19_04555 0.13 +0.0 932,759 + MPMX19_04555 0.26 -1.6 932,760 - MPMX19_04555 0.26 -2.4 933,406 + MPMX19_04555 0.42 -0.5 933,406 + MPMX19_04555 0.42 +0.3 933,406 + MPMX19_04555 0.42 +0.6 933,406 + MPMX19_04555 0.42 -0.1 933,407 - MPMX19_04555 0.42 -1.1 933,407 - MPMX19_04555 0.42 -1.2 933,661 + MPMX19_04555 0.49 +0.0 933,661 + MPMX19_04555 0.49 -1.2 933,661 + MPMX19_04555 0.49 -0.2 933,661 + MPMX19_04555 0.49 -0.4 933,662 - MPMX19_04555 0.49 +0.1 933,662 - MPMX19_04555 0.49 +0.5 933,662 - MPMX19_04555 0.49 +1.5 933,662 - MPMX19_04555 0.49 +0.5 933,662 - MPMX19_04555 0.49 -2.2 933,662 - MPMX19_04555 0.49 -0.6 933,662 - MPMX19_04555 0.49 +0.8 933,662 - MPMX19_04555 0.49 -1.3 933,662 - MPMX19_04555 0.49 -2.1 933,662 - MPMX19_04555 0.49 -1.6 934,157 + MPMX19_04555 0.62 +0.4 934,158 - MPMX19_04555 0.62 -0.7 934,159 + MPMX19_04555 0.62 +1.2 934,159 + MPMX19_04555 0.62 -0.7 934,159 + MPMX19_04555 0.62 -1.9 934,159 + MPMX19_04555 0.62 +0.3 934,159 + MPMX19_04555 0.62 -0.7 934,159 + MPMX19_04555 0.62 +0.8 934,159 + MPMX19_04555 0.62 +0.7 934,159 + MPMX19_04555 0.62 -0.3 934,159 + MPMX19_04555 0.62 -0.9 934,159 + MPMX19_04555 0.62 -1.1 934,160 - MPMX19_04555 0.62 -1.5 934,160 - MPMX19_04555 0.62 -0.2 934,160 - MPMX19_04555 0.62 -1.3 934,160 - MPMX19_04555 0.62 -1.9 934,160 - MPMX19_04555 0.62 -0.8 934,160 - MPMX19_04555 0.62 -0.5 934,160 - MPMX19_04555 0.62 -1.7 934,160 - MPMX19_04555 0.62 -2.0 934,160 - MPMX19_04555 0.62 -1.3 934,176 + MPMX19_04555 0.63 -3.1 934,176 + MPMX19_04555 0.63 -1.3 934,177 - MPMX19_04555 0.63 -0.4 934,256 - MPMX19_04555 0.65 +0.3 934,615 + MPMX19_04555 0.74 -1.2 934,616 - MPMX19_04555 0.74 -0.1 934,616 - MPMX19_04555 0.74 +0.3 934,616 - MPMX19_04555 0.74 -1.2 934,616 - MPMX19_04555 0.74 +0.1 934,616 - MPMX19_04555 0.74 -0.5 934,646 + MPMX19_04555 0.75 -0.4 934,647 - MPMX19_04555 0.75 +0.3 934,678 + MPMX19_04555 0.76 +0.3 934,678 + MPMX19_04555 0.76 -0.4 934,678 + MPMX19_04555 0.76 -0.7 934,678 + MPMX19_04555 0.76 -0.7 934,678 + MPMX19_04555 0.76 -0.7 934,678 + MPMX19_04555 0.76 -1.0 934,678 + MPMX19_04555 0.76 +0.3 934,678 + MPMX19_04555 0.76 +0.5 934,679 - MPMX19_04555 0.76 -0.6 934,679 - MPMX19_04555 0.76 +0.3 934,679 - MPMX19_04555 0.76 +0.3 934,679 - MPMX19_04555 0.76 -0.7 934,679 - MPMX19_04555 0.76 +0.3 934,679 - MPMX19_04555 0.76 -2.5 934,679 - MPMX19_04555 0.76 +0.5 934,993 + MPMX19_04555 0.84 +0.3 934,993 + MPMX19_04555 0.84 -1.2 934,993 + MPMX19_04555 0.84 -2.1 934,993 + MPMX19_04555 0.84 +0.7 934,993 + MPMX19_04555 0.84 +1.1 934,994 - MPMX19_04555 0.84 -1.0 934,994 - MPMX19_04555 0.84 +0.1 934,994 - MPMX19_04555 0.84 +0.6 934,994 - MPMX19_04555 0.84 -0.1 935,203 + MPMX19_04555 0.89 -0.3 935,203 + MPMX19_04555 0.89 +0.6 935,204 - MPMX19_04555 0.89 -1.0 935,204 - MPMX19_04555 0.89 -1.7 935,204 - MPMX19_04555 0.89 -0.3 935,204 - MPMX19_04555 0.89 -0.6 935,204 - MPMX19_04555 0.89 -1.7 935,204 - MPMX19_04555 0.89 -0.1 935,204 - MPMX19_04555 0.89 +1.0 935,204 - MPMX19_04555 0.89 -0.7 935,204 - MPMX19_04555 0.89 -1.1 935,209 + MPMX19_04555 0.90 -1.5 935,209 + MPMX19_04555 0.90 -1.4 935,209 + MPMX19_04555 0.90 -1.0 935,210 - MPMX19_04555 0.90 +0.2 935,210 - MPMX19_04555 0.90 -1.5 935,212 + MPMX19_04555 0.90 -0.4 935,212 + MPMX19_04555 0.90 +0.2 935,213 - MPMX19_04555 0.90 -1.3 935,213 - MPMX19_04555 0.90 -0.6 935,218 + MPMX19_04555 0.90 -0.6 935,218 + MPMX19_04555 0.90 -1.7 935,218 + MPMX19_04555 0.90 +0.6 935,218 + MPMX19_04555 0.90 -0.2 935,218 + MPMX19_04555 0.90 +0.6 935,218 + MPMX19_04555 0.90 +0.3 935,218 + MPMX19_04555 0.90 -1.9 935,219 - MPMX19_04555 0.90 -0.7 935,219 - MPMX19_04555 0.90 +0.6 935,219 - MPMX19_04555 0.90 -1.5 935,219 - MPMX19_04555 0.90 +0.8 935,219 - MPMX19_04555 0.90 -1.5 935,219 - MPMX19_04555 0.90 -0.8 935,233 + -0.5 935,233 + +0.3 935,410 + -0.4 935,410 + -0.7 935,410 + -1.0 935,410 + -0.9 935,411 - +0.0 935,411 - -0.7 935,411 - -1.0 935,411 - +1.4 935,437 + -1.2 935,437 + +0.5 935,438 - -0.1 935,642 + -0.2 935,643 - -0.5 935,643 - -0.5 935,643 - -1.2 935,643 - -1.0 935,791 + MPMX19_04556 0.59 -0.9 935,889 + +0.2 935,889 + +1.0 935,890 - -1.9 935,924 - -0.6 935,982 + +0.8 935,983 - -1.5 936,026 + -0.5 936,034 + -0.1 936,035 - -0.4 936,035 - -1.6 936,331 + +0.1 936,331 + -0.6 936,331 + -1.2 936,333 + -0.7 936,333 + -1.0 936,333 + -2.0 936,333 + -1.5 936,333 + -1.2 936,333 + +0.8 936,333 + -0.7 936,333 - +0.3 936,334 - -1.4 936,334 - +0.3 936,334 - -0.9 936,335 + +0.0 936,335 + -0.9 936,335 + -1.2 936,335 + -0.0 936,335 + +0.3 936,335 + -0.2 936,336 - -0.8 936,336 - -1.0 936,336 - -1.0 936,336 - -0.1 936,336 - +0.4 936,386 - +1.0 936,419 + +0.4 936,420 - -1.5 936,564 + MPMX19_04557 0.12 -0.2 936,564 + MPMX19_04557 0.12 -1.2 936,565 - MPMX19_04557 0.12 -0.2 936,565 - MPMX19_04557 0.12 +0.6 936,585 + MPMX19_04557 0.14 -1.6 936,585 + MPMX19_04557 0.14 -1.5
Or see this region's nucleotide sequence