Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04541

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04539 and MPMX19_04540 overlap by 8 nucleotidesMPMX19_04540 and MPMX19_04541 overlap by 17 nucleotidesMPMX19_04541 and MPMX19_04542 overlap by 4 nucleotidesMPMX19_04542 and MPMX19_04543 are separated by 177 nucleotides MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466 _04539 MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358 _04540 MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175 _04541 MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897 _04542 MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809 _04543 Position (kb) 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 913.362 kb on + strand, within MPMX19_04539at 913.362 kb on + strand, within MPMX19_04539at 913.363 kb on - strand, within MPMX19_04539at 913.423 kb on - strandat 913.555 kb on - strand, within MPMX19_04540at 913.714 kb on + strand, within MPMX19_04540at 913.714 kb on + strand, within MPMX19_04540at 913.715 kb on - strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.056 kb on + strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.057 kb on - strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.065 kb on + strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.066 kb on - strand, within MPMX19_04540at 914.194 kb on + strand, within MPMX19_04540at 914.194 kb on + strand, within MPMX19_04540at 914.195 kb on - strand, within MPMX19_04540at 915.077 kb on + strand, within MPMX19_04541at 915.077 kb on + strand, within MPMX19_04541at 915.078 kb on - strand, within MPMX19_04541at 915.205 kb on + strandat 915.205 kb on + strandat 915.205 kb on + strandat 915.206 kb on - strandat 915.206 kb on - strandat 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.418 kb on + strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.419 kb on - strand, within MPMX19_04542at 915.538 kb on + strand, within MPMX19_04542at 915.539 kb on - strand, within MPMX19_04542at 915.793 kb on + strand, within MPMX19_04542at 915.793 kb on + strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.794 kb on - strand, within MPMX19_04542at 915.871 kb on + strandat 915.871 kb on + strandat 915.871 kb on + strandat 915.872 kb on - strandat 915.872 kb on - strandat 915.872 kb on - strandat 915.872 kb on - strandat 915.872 kb on - strandat 915.932 kb on + strandat 915.932 kb on + strandat 915.933 kb on - strandat 915.933 kb on - strandat 915.933 kb on - strandat 915.933 kb on - strandat 915.933 kb on - strandat 915.933 kb on - strandat 915.934 kb on + strandat 915.935 kb on - strandat 915.935 kb on - strandat 915.946 kb on + strandat 915.961 kb on - strandat 915.961 kb on - strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.065 kb on + strandat 916.066 kb on - strandat 916.066 kb on - strandat 916.066 kb on - strandat 916.066 kb on - strandat 916.066 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
913,362 + MPMX19_04539 0.88 +1.0
913,362 + MPMX19_04539 0.88 -0.0
913,363 - MPMX19_04539 0.88 +1.4
913,423 - -0.2
913,555 - MPMX19_04540 0.11 +1.0
913,714 + MPMX19_04540 0.28 -0.5
913,714 + MPMX19_04540 0.28 +0.4
913,715 - MPMX19_04540 0.28 -1.2
914,056 + MPMX19_04540 0.66 +1.1
914,056 + MPMX19_04540 0.66 +0.6
914,056 + MPMX19_04540 0.66 -0.9
914,056 + MPMX19_04540 0.66 -0.6
914,056 + MPMX19_04540 0.66 -1.0
914,056 + MPMX19_04540 0.66 -0.5
914,056 + MPMX19_04540 0.66 +0.8
914,056 + MPMX19_04540 0.66 +0.0
914,057 - MPMX19_04540 0.66 +0.5
914,057 - MPMX19_04540 0.66 +0.5
914,057 - MPMX19_04540 0.66 +1.4
914,057 - MPMX19_04540 0.66 -0.2
914,057 - MPMX19_04540 0.66 +1.0
914,057 - MPMX19_04540 0.66 -1.0
914,057 - MPMX19_04540 0.66 +0.6
914,057 - MPMX19_04540 0.66 -0.9
914,065 + MPMX19_04540 0.67 +0.3
914,065 + MPMX19_04540 0.67 -0.7
914,065 + MPMX19_04540 0.67 -0.6
914,065 + MPMX19_04540 0.67 -0.5
914,065 + MPMX19_04540 0.67 -0.2
914,066 - MPMX19_04540 0.67 -0.7
914,066 - MPMX19_04540 0.67 -0.4
914,066 - MPMX19_04540 0.67 -0.1
914,194 + MPMX19_04540 0.82 +0.5
914,194 + MPMX19_04540 0.82 +0.1
914,195 - MPMX19_04540 0.82 -0.0
915,077 + MPMX19_04541 0.88 -0.5
915,077 + MPMX19_04541 0.88 -0.5
915,078 - MPMX19_04541 0.88 +1.0
915,205 + -1.2
915,205 + -0.1
915,205 + +1.5
915,206 - -1.7
915,206 - -0.2
915,418 + MPMX19_04542 0.34 +1.0
915,418 + MPMX19_04542 0.34 -1.2
915,418 + MPMX19_04542 0.34 -1.3
915,418 + MPMX19_04542 0.34 +0.8
915,418 + MPMX19_04542 0.34 -0.0
915,418 + MPMX19_04542 0.34 -0.3
915,418 + MPMX19_04542 0.34 -2.2
915,418 + MPMX19_04542 0.34 +1.3
915,418 + MPMX19_04542 0.34 -2.6
915,418 + MPMX19_04542 0.34 -0.5
915,418 + MPMX19_04542 0.34 -0.6
915,418 + MPMX19_04542 0.34 -1.0
915,418 + MPMX19_04542 0.34 +0.2
915,418 + MPMX19_04542 0.34 -1.0
915,418 + MPMX19_04542 0.34 +1.4
915,419 - MPMX19_04542 0.34 -1.0
915,419 - MPMX19_04542 0.34 +1.4
915,419 - MPMX19_04542 0.34 -1.3
915,419 - MPMX19_04542 0.34 -1.2
915,419 - MPMX19_04542 0.34 -0.4
915,419 - MPMX19_04542 0.34 -0.3
915,419 - MPMX19_04542 0.34 +0.2
915,419 - MPMX19_04542 0.34 -0.7
915,419 - MPMX19_04542 0.34 -1.2
915,419 - MPMX19_04542 0.34 -1.0
915,419 - MPMX19_04542 0.34 +0.3
915,419 - MPMX19_04542 0.34 -0.2
915,419 - MPMX19_04542 0.34 +1.0
915,538 + MPMX19_04542 0.50 +1.3
915,539 - MPMX19_04542 0.51 -1.2
915,793 + MPMX19_04542 0.86 +0.3
915,793 + MPMX19_04542 0.86 +0.5
915,794 - MPMX19_04542 0.86 -0.6
915,794 - MPMX19_04542 0.86 -1.4
915,794 - MPMX19_04542 0.86 -1.0
915,794 - MPMX19_04542 0.86 -0.5
915,794 - MPMX19_04542 0.86 -0.4
915,794 - MPMX19_04542 0.86 +0.1
915,871 + -1.5
915,871 + -0.4
915,871 + -0.0
915,872 - -1.1
915,872 - -0.6
915,872 - -1.5
915,872 - -0.3
915,872 - -0.3
915,932 + -2.2
915,932 + -3.2
915,933 - -0.2
915,933 - -0.7
915,933 - -0.7
915,933 - -0.3
915,933 - +1.8
915,933 - -0.5
915,934 + +0.4
915,935 - -0.0
915,935 - -0.5
915,946 + -0.1
915,961 - +0.7
915,961 - -1.9
916,065 + -1.2
916,065 + +0.4
916,065 + -0.5
916,065 + -0.7
916,065 + -0.0
916,065 + +0.7
916,065 + +0.8
916,065 + +0.3
916,066 - -0.6
916,066 - +0.5
916,066 - +1.6
916,066 - -2.3
916,066 - +0.8

Or see this region's nucleotide sequence