Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04517 and MPMX19_04518 are separated by 2 nucleotides MPMX19_04518 and MPMX19_04519 are separated by 431 nucleotides
MPMX19_04517: MPMX19_04517 - Glycine cleavage system transcriptional activator, at 889,890 to 890,936
_04517
MPMX19_04518: MPMX19_04518 - Acetyl-CoA:oxalate CoA-transferase, at 890,939 to 892,141
_04518
MPMX19_04519: MPMX19_04519 - hypothetical protein, at 892,573 to 893,742
_04519
Position (kb)
890
891
892
893 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.993 kb on + strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.994 kb on - strand at 889.996 kb on + strand, within MPMX19_04517 at 889.997 kb on - strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.365 kb on + strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.366 kb on - strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.825 kb on + strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.826 kb on - strand, within MPMX19_04517 at 890.827 kb on + strand, within MPMX19_04517 at 890.827 kb on + strand, within MPMX19_04517 at 890.828 kb on - strand, within MPMX19_04517 at 890.828 kb on - strand, within MPMX19_04517 at 891.363 kb on + strand, within MPMX19_04518 at 891.478 kb on - strand, within MPMX19_04518 at 891.723 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.759 kb on + strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.760 kb on - strand, within MPMX19_04518 at 891.795 kb on + strand, within MPMX19_04518 at 891.795 kb on + strand, within MPMX19_04518 at 891.911 kb on - strand, within MPMX19_04518 at 891.911 kb on - strand, within MPMX19_04518 at 891.945 kb on + strand, within MPMX19_04518 at 891.946 kb on - strand, within MPMX19_04518 at 892.056 kb on + strand at 892.057 kb on - strand at 892.274 kb on + strand at 892.386 kb on - strand at 892.428 kb on + strand at 892.428 kb on + strand at 892.429 kb on - strand at 892.612 kb on + strand at 892.612 kb on + strand at 892.613 kb on - strand at 892.789 kb on + strand, within MPMX19_04519 at 892.789 kb on + strand, within MPMX19_04519 at 892.789 kb on + strand, within MPMX19_04519 at 892.789 kb on + strand, within MPMX19_04519 at 892.789 kb on + strand, within MPMX19_04519 at 892.790 kb on - strand, within MPMX19_04519 at 892.790 kb on - strand, within MPMX19_04519 at 892.791 kb on + strand, within MPMX19_04519 at 892.791 kb on + strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.792 kb on - strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.810 kb on + strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.811 kb on - strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.843 kb on + strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.844 kb on - strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.912 kb on + strand, within MPMX19_04519 at 892.913 kb on - strand, within MPMX19_04519 at 892.913 kb on - strand, within MPMX19_04519 at 892.913 kb on - strand, within MPMX19_04519 at 892.913 kb on - strand, within MPMX19_04519 at 892.990 kb on + strand, within MPMX19_04519 at 892.990 kb on + strand, within MPMX19_04519 at 892.990 kb on + strand, within MPMX19_04519 at 892.990 kb on + strand, within MPMX19_04519 at 892.990 kb on + strand, within MPMX19_04519 at 892.991 kb on - strand, within MPMX19_04519 at 892.991 kb on - strand, within MPMX19_04519 at 892.991 kb on - strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.026 kb on + strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.027 kb on - strand, within MPMX19_04519 at 893.049 kb on + strand, within MPMX19_04519 at 893.050 kb on - strand, within MPMX19_04519 at 893.050 kb on - strand, within MPMX19_04519 at 893.050 kb on - strand, within MPMX19_04519 at 893.050 kb on - strand, within MPMX19_04519 at 893.050 kb on - strand, within MPMX19_04519 at 893.059 kb on + strand, within MPMX19_04519 at 893.059 kb on + strand, within MPMX19_04519
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 889,993 + +1.0 889,993 + +0.8 889,993 + -1.0 889,993 + +0.3 889,993 + -0.6 889,993 + +1.3 889,993 + -0.7 889,993 + +0.3 889,993 + +0.1 889,993 + +0.1 889,993 + -2.3 889,993 + -0.7 889,993 + +0.4 889,993 + -1.6 889,993 + +0.6 889,994 - -0.2 889,994 - -0.5 889,994 - +0.4 889,994 - +1.2 889,994 - -0.5 889,994 - -2.2 889,994 - +0.4 889,994 - +0.0 889,994 - -1.4 889,994 - -1.0 889,994 - +0.1 889,994 - +0.1 889,996 + MPMX19_04517 0.10 -0.2 889,997 - MPMX19_04517 0.10 -1.1 890,365 + MPMX19_04517 0.45 -0.4 890,365 + MPMX19_04517 0.45 +0.0 890,365 + MPMX19_04517 0.45 -1.1 890,365 + MPMX19_04517 0.45 -0.3 890,365 + MPMX19_04517 0.45 -2.5 890,365 + MPMX19_04517 0.45 +1.5 890,365 + MPMX19_04517 0.45 +1.0 890,365 + MPMX19_04517 0.45 -1.0 890,365 + MPMX19_04517 0.45 -0.1 890,365 + MPMX19_04517 0.45 -0.3 890,365 + MPMX19_04517 0.45 -0.9 890,365 + MPMX19_04517 0.45 -0.5 890,365 + MPMX19_04517 0.45 +1.6 890,365 + MPMX19_04517 0.45 +0.7 890,365 + MPMX19_04517 0.45 +0.0 890,365 + MPMX19_04517 0.45 +0.1 890,366 - MPMX19_04517 0.45 +0.6 890,366 - MPMX19_04517 0.45 +0.5 890,366 - MPMX19_04517 0.45 -1.2 890,366 - MPMX19_04517 0.45 -2.0 890,366 - MPMX19_04517 0.45 +0.7 890,366 - MPMX19_04517 0.45 -0.7 890,366 - MPMX19_04517 0.45 -1.5 890,366 - MPMX19_04517 0.45 +0.1 890,366 - MPMX19_04517 0.45 +1.1 890,366 - MPMX19_04517 0.45 +1.3 890,366 - MPMX19_04517 0.45 +0.5 890,366 - MPMX19_04517 0.45 +0.4 890,366 - MPMX19_04517 0.45 -0.7 890,366 - MPMX19_04517 0.45 +0.8 890,366 - MPMX19_04517 0.45 +0.7 890,366 - MPMX19_04517 0.45 -1.1 890,366 - MPMX19_04517 0.45 +0.6 890,825 + MPMX19_04517 0.89 -1.6 890,825 + MPMX19_04517 0.89 +1.1 890,825 + MPMX19_04517 0.89 -0.4 890,825 + MPMX19_04517 0.89 -0.1 890,825 + MPMX19_04517 0.89 +0.5 890,825 + MPMX19_04517 0.89 -1.2 890,825 + MPMX19_04517 0.89 -1.2 890,825 + MPMX19_04517 0.89 -0.3 890,825 + MPMX19_04517 0.89 -0.8 890,826 - MPMX19_04517 0.89 -0.8 890,826 - MPMX19_04517 0.89 -2.7 890,826 - MPMX19_04517 0.89 +0.0 890,826 - MPMX19_04517 0.89 -0.4 890,826 - MPMX19_04517 0.89 -0.5 890,826 - MPMX19_04517 0.89 -1.6 890,826 - MPMX19_04517 0.89 +0.3 890,826 - MPMX19_04517 0.89 -0.2 890,826 - MPMX19_04517 0.89 -0.7 890,826 - MPMX19_04517 0.89 -0.8 890,827 + MPMX19_04517 0.89 -1.6 890,827 + MPMX19_04517 0.89 +0.1 890,828 - MPMX19_04517 0.90 +1.0 890,828 - MPMX19_04517 0.90 +0.7 891,363 + MPMX19_04518 0.35 +0.9 891,478 - MPMX19_04518 0.45 -1.3 891,723 + MPMX19_04518 0.65 +1.1 891,759 + MPMX19_04518 0.68 -0.4 891,759 + MPMX19_04518 0.68 +1.0 891,759 + MPMX19_04518 0.68 -2.1 891,759 + MPMX19_04518 0.68 +1.4 891,759 + MPMX19_04518 0.68 +0.0 891,760 - MPMX19_04518 0.68 -1.0 891,760 - MPMX19_04518 0.68 +2.4 891,760 - MPMX19_04518 0.68 +0.4 891,760 - MPMX19_04518 0.68 -1.5 891,760 - MPMX19_04518 0.68 +0.1 891,760 - MPMX19_04518 0.68 -0.5 891,760 - MPMX19_04518 0.68 +0.0 891,795 + MPMX19_04518 0.71 +0.8 891,795 + MPMX19_04518 0.71 +0.7 891,911 - MPMX19_04518 0.81 +0.4 891,911 - MPMX19_04518 0.81 +0.3 891,945 + MPMX19_04518 0.84 +1.0 891,946 - MPMX19_04518 0.84 -0.9 892,056 + +0.8 892,057 - -0.7 892,274 + -0.5 892,386 - -0.2 892,428 + +0.1 892,428 + +0.1 892,429 - +0.4 892,612 + +0.5 892,612 + +0.6 892,613 - -0.0 892,789 + MPMX19_04519 0.18 +0.6 892,789 + MPMX19_04519 0.18 -1.0 892,789 + MPMX19_04519 0.18 -0.5 892,789 + MPMX19_04519 0.18 +0.4 892,789 + MPMX19_04519 0.18 -0.7 892,790 - MPMX19_04519 0.19 -1.4 892,790 - MPMX19_04519 0.19 +0.7 892,791 + MPMX19_04519 0.19 -1.2 892,791 + MPMX19_04519 0.19 -0.0 892,792 - MPMX19_04519 0.19 +1.0 892,792 - MPMX19_04519 0.19 -0.7 892,792 - MPMX19_04519 0.19 -1.4 892,792 - MPMX19_04519 0.19 -1.0 892,792 - MPMX19_04519 0.19 -1.2 892,792 - MPMX19_04519 0.19 -0.7 892,810 + MPMX19_04519 0.20 +0.1 892,810 + MPMX19_04519 0.20 -0.4 892,810 + MPMX19_04519 0.20 +0.9 892,810 + MPMX19_04519 0.20 -0.3 892,810 + MPMX19_04519 0.20 +0.1 892,810 + MPMX19_04519 0.20 -2.0 892,810 + MPMX19_04519 0.20 +1.5 892,811 - MPMX19_04519 0.20 -1.1 892,811 - MPMX19_04519 0.20 +1.0 892,811 - MPMX19_04519 0.20 -0.6 892,811 - MPMX19_04519 0.20 -0.5 892,811 - MPMX19_04519 0.20 +0.7 892,811 - MPMX19_04519 0.20 +0.8 892,811 - MPMX19_04519 0.20 -1.1 892,843 + MPMX19_04519 0.23 -0.2 892,843 + MPMX19_04519 0.23 -0.9 892,843 + MPMX19_04519 0.23 -2.0 892,843 + MPMX19_04519 0.23 +0.4 892,843 + MPMX19_04519 0.23 -2.0 892,843 + MPMX19_04519 0.23 +0.6 892,843 + MPMX19_04519 0.23 -0.7 892,843 + MPMX19_04519 0.23 +0.6 892,843 + MPMX19_04519 0.23 +1.7 892,844 - MPMX19_04519 0.23 -0.3 892,844 - MPMX19_04519 0.23 +0.6 892,844 - MPMX19_04519 0.23 +1.3 892,844 - MPMX19_04519 0.23 +0.3 892,844 - MPMX19_04519 0.23 +2.1 892,844 - MPMX19_04519 0.23 +0.0 892,844 - MPMX19_04519 0.23 +0.6 892,844 - MPMX19_04519 0.23 +0.4 892,844 - MPMX19_04519 0.23 -0.7 892,912 + MPMX19_04519 0.29 -2.4 892,912 + MPMX19_04519 0.29 +0.6 892,912 + MPMX19_04519 0.29 -0.2 892,912 + MPMX19_04519 0.29 -0.5 892,912 + MPMX19_04519 0.29 +0.1 892,912 + MPMX19_04519 0.29 -0.2 892,912 + MPMX19_04519 0.29 -0.8 892,912 + MPMX19_04519 0.29 +0.3 892,912 + MPMX19_04519 0.29 -1.2 892,912 + MPMX19_04519 0.29 -1.0 892,912 + MPMX19_04519 0.29 -1.0 892,913 - MPMX19_04519 0.29 +1.3 892,913 - MPMX19_04519 0.29 +0.0 892,913 - MPMX19_04519 0.29 +1.4 892,913 - MPMX19_04519 0.29 -3.0 892,990 + MPMX19_04519 0.36 -0.6 892,990 + MPMX19_04519 0.36 +0.0 892,990 + MPMX19_04519 0.36 +0.6 892,990 + MPMX19_04519 0.36 -0.4 892,990 + MPMX19_04519 0.36 +0.3 892,991 - MPMX19_04519 0.36 +0.5 892,991 - MPMX19_04519 0.36 +0.7 892,991 - MPMX19_04519 0.36 +2.4 893,026 + MPMX19_04519 0.39 -1.9 893,026 + MPMX19_04519 0.39 -0.0 893,026 + MPMX19_04519 0.39 -0.2 893,026 + MPMX19_04519 0.39 +0.3 893,026 + MPMX19_04519 0.39 -0.6 893,026 + MPMX19_04519 0.39 +0.5 893,026 + MPMX19_04519 0.39 -0.2 893,026 + MPMX19_04519 0.39 -2.0 893,026 + MPMX19_04519 0.39 -0.7 893,026 + MPMX19_04519 0.39 -0.3 893,026 + MPMX19_04519 0.39 -0.3 893,027 - MPMX19_04519 0.39 -0.2 893,027 - MPMX19_04519 0.39 -2.4 893,027 - MPMX19_04519 0.39 -2.2 893,027 - MPMX19_04519 0.39 -0.7 893,027 - MPMX19_04519 0.39 -0.3 893,027 - MPMX19_04519 0.39 -2.4 893,027 - MPMX19_04519 0.39 +0.5 893,027 - MPMX19_04519 0.39 -0.7 893,027 - MPMX19_04519 0.39 -0.6 893,027 - MPMX19_04519 0.39 -0.1 893,027 - MPMX19_04519 0.39 -0.1 893,049 + MPMX19_04519 0.41 -0.3 893,050 - MPMX19_04519 0.41 -2.0 893,050 - MPMX19_04519 0.41 -0.4 893,050 - MPMX19_04519 0.41 +1.0 893,050 - MPMX19_04519 0.41 -0.2 893,050 - MPMX19_04519 0.41 +0.3 893,059 + MPMX19_04519 0.42 -1.4 893,059 + MPMX19_04519 0.42 -0.3
Or see this region's nucleotide sequence