Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04490 and MPMX19_04491 are separated by 16 nucleotides MPMX19_04491 and MPMX19_04492 are separated by 233 nucleotides MPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides
MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542
_04490
MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075
_04491
MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551
_04492
MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780
_04493
Position (kb) 857
858
859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.621 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.923 kb on - strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.547 kb on - strand at 857.560 kb on + strand at 857.561 kb on - strand at 857.671 kb on + strand at 857.672 kb on - strand at 857.672 kb on - strand at 857.672 kb on - strand at 858.064 kb on + strand, within MPMX19_04491 at 858.064 kb on + strand, within MPMX19_04491 at 858.065 kb on - strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.874 kb on + strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.875 kb on - strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.877 kb on + strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.878 kb on - strand, within MPMX19_04491 at 858.905 kb on - strand, within MPMX19_04491 at 858.905 kb on - strand, within MPMX19_04491 at 858.916 kb on + strand, within MPMX19_04491 at 858.916 kb on + strand, within MPMX19_04491 at 858.917 kb on - strand, within MPMX19_04491 at 858.917 kb on - strand, within MPMX19_04491 at 859.460 kb on - strand, within MPMX19_04491 at 859.460 kb on - strand, within MPMX19_04491 at 859.711 kb on + strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.199 kb on - strand at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.528 kb on + strand at 860.528 kb on + strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.611 kb on - strand at 860.611 kb on - strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 856,621 + -1.5 856,710 + +0.7 856,710 + +1.3 856,710 + -0.4 856,710 + -0.6 856,711 - -0.5 856,711 - +1.0 856,711 - -1.3 856,711 - -0.3 856,711 - -1.0 856,796 + -0.9 856,796 + -1.2 856,796 + -0.8 856,796 + +0.3 856,796 + -0.1 856,797 - -0.3 856,797 - +2.1 856,797 - +0.2 856,797 - -2.9 856,797 - -0.3 856,797 - +0.5 856,797 - +1.4 856,797 - -0.2 856,923 - MPMX19_04490 0.22 +0.3 857,249 + MPMX19_04490 0.63 +1.8 857,249 + MPMX19_04490 0.63 -1.3 857,249 + MPMX19_04490 0.63 -0.7 857,249 + MPMX19_04490 0.63 -1.5 857,249 + MPMX19_04490 0.63 -2.7 857,249 + MPMX19_04490 0.63 +0.8 857,249 + MPMX19_04490 0.63 -1.1 857,249 + MPMX19_04490 0.63 -0.6 857,249 + MPMX19_04490 0.63 +0.0 857,250 - MPMX19_04490 0.63 -1.6 857,250 - MPMX19_04490 0.63 +0.5 857,250 - MPMX19_04490 0.63 -0.6 857,250 - MPMX19_04490 0.63 +0.7 857,250 - MPMX19_04490 0.63 -1.3 857,250 - MPMX19_04490 0.63 -0.7 857,250 - MPMX19_04490 0.63 +0.2 857,250 - MPMX19_04490 0.63 -1.2 857,250 - MPMX19_04490 0.63 -1.2 857,250 - MPMX19_04490 0.63 -1.6 857,250 - MPMX19_04490 0.63 -1.3 857,435 + MPMX19_04490 0.86 +0.4 857,435 + MPMX19_04490 0.86 -0.4 857,435 + MPMX19_04490 0.86 +0.4 857,435 + MPMX19_04490 0.86 +0.4 857,436 - MPMX19_04490 0.87 -0.7 857,436 - MPMX19_04490 0.87 -0.9 857,436 - MPMX19_04490 0.87 +0.2 857,546 + +0.4 857,546 + -1.0 857,546 + -0.7 857,546 + -0.6 857,547 - -0.2 857,560 + -2.6 857,561 - -1.9 857,671 + -0.1 857,672 - -0.6 857,672 - -0.4 857,672 - -0.1 858,064 + MPMX19_04491 0.20 +0.1 858,064 + MPMX19_04491 0.20 +1.0 858,065 - MPMX19_04491 0.20 -1.0 858,874 + MPMX19_04491 0.52 +0.4 858,874 + MPMX19_04491 0.52 -1.3 858,874 + MPMX19_04491 0.52 +0.4 858,874 + MPMX19_04491 0.52 -0.8 858,874 + MPMX19_04491 0.52 -2.2 858,875 - MPMX19_04491 0.52 +0.1 858,875 - MPMX19_04491 0.52 +0.5 858,875 - MPMX19_04491 0.52 -0.2 858,875 - MPMX19_04491 0.52 +0.0 858,875 - MPMX19_04491 0.52 +0.3 858,877 + MPMX19_04491 0.52 -0.1 858,877 + MPMX19_04491 0.52 +1.6 858,877 + MPMX19_04491 0.52 -1.6 858,877 + MPMX19_04491 0.52 -2.0 858,878 - MPMX19_04491 0.52 -1.4 858,878 - MPMX19_04491 0.52 -1.0 858,878 - MPMX19_04491 0.52 -0.3 858,878 - MPMX19_04491 0.52 +0.8 858,878 - MPMX19_04491 0.52 +1.1 858,905 - MPMX19_04491 0.53 -0.1 858,905 - MPMX19_04491 0.53 +1.0 858,916 + MPMX19_04491 0.54 -1.0 858,916 + MPMX19_04491 0.54 -0.5 858,917 - MPMX19_04491 0.54 -0.0 858,917 - MPMX19_04491 0.54 +0.6 859,460 - MPMX19_04491 0.76 +1.0 859,460 - MPMX19_04491 0.76 -1.2 859,711 + MPMX19_04491 0.85 -0.2 859,712 - MPMX19_04491 0.86 -2.3 859,712 - MPMX19_04491 0.86 +1.3 859,712 - MPMX19_04491 0.86 +0.5 859,782 + MPMX19_04491 0.88 +0.2 859,782 + MPMX19_04491 0.88 +1.0 859,782 + MPMX19_04491 0.88 +1.8 859,783 - MPMX19_04491 0.88 +0.1 859,783 - MPMX19_04491 0.88 -0.6 859,783 - MPMX19_04491 0.88 -0.4 859,783 - MPMX19_04491 0.88 -0.2 859,903 + +0.0 859,903 + +0.1 859,903 + -0.4 859,903 + +0.7 859,903 + -0.1 859,903 + +0.1 859,903 + -0.3 859,904 - -1.2 859,904 - -0.2 859,904 - -0.5 859,904 - +0.8 859,904 - -1.5 859,904 - -1.7 859,904 - +0.5 859,915 + +1.3 859,915 + -0.7 859,915 + -0.6 859,915 + +0.7 859,915 + -0.1 859,916 - -0.2 859,916 - -1.6 859,916 - -2.5 859,916 - +1.3 859,916 - -3.2 859,916 - +0.4 860,196 + -0.7 860,196 + -2.7 860,196 + -0.6 860,196 + -1.5 860,196 + +0.7 860,197 - +0.2 860,197 - -0.2 860,197 - -1.0 860,197 - -1.2 860,197 - -1.5 860,197 - +0.8 860,198 + -1.5 860,198 + -0.3 860,198 + -0.3 860,199 - -0.7 860,349 + MPMX19_04492 0.16 -0.8 860,349 + MPMX19_04492 0.16 +0.2 860,349 + MPMX19_04492 0.16 +0.8 860,349 + MPMX19_04492 0.16 -1.9 860,349 + MPMX19_04492 0.16 +0.3 860,350 - MPMX19_04492 0.17 +1.1 860,350 - MPMX19_04492 0.17 +1.2 860,350 - MPMX19_04492 0.17 -0.7 860,528 + -0.0 860,528 + -0.2 860,529 - -0.7 860,529 - -0.5 860,529 - -0.7 860,558 + -0.7 860,558 + -2.2 860,558 + -0.2 860,558 + +0.2 860,610 + +0.4 860,610 + -0.1 860,610 + -1.7 860,610 + +0.4 860,610 + +0.2 860,610 + -0.7 860,610 + +0.5 860,611 - -0.2 860,611 - -0.3 860,676 + -0.7 860,676 + -1.9 860,676 + +0.8 860,677 - -0.6
Or see this region's nucleotide sequence