Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04487 and MPMX19_04488 are separated by 14 nucleotides MPMX19_04488 and MPMX19_04489 are separated by 20 nucleotides MPMX19_04489 and MPMX19_04490 are separated by 187 nucleotides
MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567
_04487
MPMX19_04488: MPMX19_04488 - putative glutamine ABC transporter permease protein GlnM, at 854,582 to 855,250
_04488
MPMX19_04489: MPMX19_04489 - D-threonine aldolase, at 855,271 to 856,557
_04489
MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542
_04490
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.281 kb on + strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.282 kb on - strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.353 kb on + strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.354 kb on - strand, within MPMX19_04487 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.661 kb on + strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.662 kb on - strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.682 kb on + strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.683 kb on - strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.700 kb on + strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.701 kb on - strand, within MPMX19_04488 at 854.811 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.943 kb on + strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.944 kb on - strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.955 kb on + strand, within MPMX19_04488 at 854.956 kb on - strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.075 kb on + strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.076 kb on - strand, within MPMX19_04488 at 855.217 kb on - strand at 855.290 kb on + strand at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.683 kb on + strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.684 kb on - strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.932 kb on + strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 855.933 kb on - strand, within MPMX19_04489 at 856.361 kb on + strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.362 kb on - strand, within MPMX19_04489 at 856.621 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.710 kb on + strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.711 kb on - strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.796 kb on + strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.797 kb on - strand at 856.923 kb on - strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.249 kb on + strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.250 kb on - strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.435 kb on + strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.436 kb on - strand, within MPMX19_04490 at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.546 kb on + strand at 857.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 854,281 + MPMX19_04487 0.56 +1.3 854,281 + MPMX19_04487 0.56 -0.6 854,281 + MPMX19_04487 0.56 +0.3 854,281 + MPMX19_04487 0.56 +0.3 854,281 + MPMX19_04487 0.56 -1.2 854,281 + MPMX19_04487 0.56 +0.7 854,281 + MPMX19_04487 0.56 +0.3 854,281 + MPMX19_04487 0.56 -0.2 854,282 - MPMX19_04487 0.56 -2.1 854,282 - MPMX19_04487 0.56 -1.3 854,282 - MPMX19_04487 0.56 +2.8 854,353 + MPMX19_04487 0.67 +0.1 854,353 + MPMX19_04487 0.67 -0.5 854,353 + MPMX19_04487 0.67 -0.3 854,353 + MPMX19_04487 0.67 -0.9 854,353 + MPMX19_04487 0.67 -1.3 854,353 + MPMX19_04487 0.67 +0.2 854,354 - MPMX19_04487 0.67 +0.0 854,354 - MPMX19_04487 0.67 -0.4 854,354 - MPMX19_04487 0.67 +0.3 854,661 + MPMX19_04488 0.12 -0.3 854,661 + MPMX19_04488 0.12 +0.8 854,661 + MPMX19_04488 0.12 -1.3 854,661 + MPMX19_04488 0.12 -1.3 854,661 + MPMX19_04488 0.12 -0.3 854,661 + MPMX19_04488 0.12 -0.0 854,661 + MPMX19_04488 0.12 -1.5 854,661 + MPMX19_04488 0.12 -1.0 854,661 + MPMX19_04488 0.12 +0.1 854,662 - MPMX19_04488 0.12 +1.2 854,662 - MPMX19_04488 0.12 -0.7 854,662 - MPMX19_04488 0.12 -0.1 854,662 - MPMX19_04488 0.12 -0.0 854,662 - MPMX19_04488 0.12 -1.6 854,662 - MPMX19_04488 0.12 -1.2 854,662 - MPMX19_04488 0.12 -1.2 854,662 - MPMX19_04488 0.12 +0.8 854,662 - MPMX19_04488 0.12 -0.5 854,662 - MPMX19_04488 0.12 -1.1 854,662 - MPMX19_04488 0.12 -0.3 854,682 + MPMX19_04488 0.15 -0.9 854,682 + MPMX19_04488 0.15 -0.5 854,682 + MPMX19_04488 0.15 -0.0 854,682 + MPMX19_04488 0.15 +0.1 854,682 + MPMX19_04488 0.15 +0.8 854,682 + MPMX19_04488 0.15 -0.7 854,682 + MPMX19_04488 0.15 -0.2 854,682 + MPMX19_04488 0.15 +0.3 854,682 + MPMX19_04488 0.15 +0.2 854,682 + MPMX19_04488 0.15 -0.1 854,683 - MPMX19_04488 0.15 +0.1 854,683 - MPMX19_04488 0.15 -2.3 854,683 - MPMX19_04488 0.15 +1.3 854,683 - MPMX19_04488 0.15 -1.3 854,683 - MPMX19_04488 0.15 -0.7 854,683 - MPMX19_04488 0.15 -0.5 854,683 - MPMX19_04488 0.15 +0.6 854,683 - MPMX19_04488 0.15 -0.9 854,683 - MPMX19_04488 0.15 -2.1 854,683 - MPMX19_04488 0.15 -0.4 854,683 - MPMX19_04488 0.15 +0.1 854,683 - MPMX19_04488 0.15 -2.0 854,683 - MPMX19_04488 0.15 +0.8 854,700 + MPMX19_04488 0.18 -1.3 854,700 + MPMX19_04488 0.18 -0.1 854,700 + MPMX19_04488 0.18 -0.2 854,701 - MPMX19_04488 0.18 -1.1 854,701 - MPMX19_04488 0.18 +0.3 854,701 - MPMX19_04488 0.18 -0.2 854,701 - MPMX19_04488 0.18 -0.7 854,811 + MPMX19_04488 0.34 -0.1 854,943 + MPMX19_04488 0.54 -1.1 854,943 + MPMX19_04488 0.54 -0.4 854,943 + MPMX19_04488 0.54 -0.0 854,943 + MPMX19_04488 0.54 -0.4 854,943 + MPMX19_04488 0.54 -1.2 854,944 - MPMX19_04488 0.54 -0.8 854,944 - MPMX19_04488 0.54 -1.9 854,955 + MPMX19_04488 0.56 -1.2 854,955 + MPMX19_04488 0.56 -1.2 854,956 - MPMX19_04488 0.56 -1.5 855,075 + MPMX19_04488 0.74 +0.4 855,075 + MPMX19_04488 0.74 +0.7 855,075 + MPMX19_04488 0.74 -1.7 855,075 + MPMX19_04488 0.74 +0.3 855,076 - MPMX19_04488 0.74 +0.4 855,076 - MPMX19_04488 0.74 -1.0 855,076 - MPMX19_04488 0.74 -0.3 855,076 - MPMX19_04488 0.74 +1.0 855,076 - MPMX19_04488 0.74 +0.8 855,076 - MPMX19_04488 0.74 -0.8 855,217 - +1.1 855,290 + +1.2 855,683 + MPMX19_04489 0.32 +1.8 855,683 + MPMX19_04489 0.32 +0.0 855,683 + MPMX19_04489 0.32 -1.1 855,683 + MPMX19_04489 0.32 -0.5 855,683 + MPMX19_04489 0.32 -1.9 855,683 + MPMX19_04489 0.32 -0.8 855,683 + MPMX19_04489 0.32 -1.5 855,683 + MPMX19_04489 0.32 -0.3 855,683 + MPMX19_04489 0.32 -0.4 855,683 + MPMX19_04489 0.32 -0.1 855,683 + MPMX19_04489 0.32 -1.3 855,683 + MPMX19_04489 0.32 +0.0 855,684 - MPMX19_04489 0.32 -1.2 855,684 - MPMX19_04489 0.32 -1.2 855,684 - MPMX19_04489 0.32 -0.0 855,684 - MPMX19_04489 0.32 +0.3 855,684 - MPMX19_04489 0.32 +0.3 855,684 - MPMX19_04489 0.32 -1.3 855,684 - MPMX19_04489 0.32 -0.8 855,932 + MPMX19_04489 0.51 -1.0 855,932 + MPMX19_04489 0.51 -1.2 855,932 + MPMX19_04489 0.51 -0.7 855,932 + MPMX19_04489 0.51 -0.2 855,932 + MPMX19_04489 0.51 -0.5 855,932 + MPMX19_04489 0.51 +0.7 855,932 + MPMX19_04489 0.51 -0.5 855,932 + MPMX19_04489 0.51 -1.7 855,932 + MPMX19_04489 0.51 +1.0 855,932 + MPMX19_04489 0.51 -1.1 855,932 + MPMX19_04489 0.51 -0.4 855,932 + MPMX19_04489 0.51 +0.3 855,932 + MPMX19_04489 0.51 +0.5 855,932 + MPMX19_04489 0.51 -0.2 855,932 + MPMX19_04489 0.51 +0.5 855,932 + MPMX19_04489 0.51 +0.3 855,933 - MPMX19_04489 0.51 -1.6 855,933 - MPMX19_04489 0.51 -0.2 855,933 - MPMX19_04489 0.51 -0.2 855,933 - MPMX19_04489 0.51 -0.7 855,933 - MPMX19_04489 0.51 -1.0 855,933 - MPMX19_04489 0.51 -0.4 855,933 - MPMX19_04489 0.51 +1.8 855,933 - MPMX19_04489 0.51 -1.1 855,933 - MPMX19_04489 0.51 -0.1 855,933 - MPMX19_04489 0.51 +0.3 856,361 + MPMX19_04489 0.85 -1.9 856,362 - MPMX19_04489 0.85 +0.2 856,362 - MPMX19_04489 0.85 +0.7 856,362 - MPMX19_04489 0.85 -0.3 856,362 - MPMX19_04489 0.85 -1.5 856,621 + -1.5 856,710 + +0.7 856,710 + +1.3 856,710 + -0.4 856,710 + -0.6 856,711 - -0.5 856,711 - +1.0 856,711 - -1.3 856,711 - -0.3 856,711 - -1.0 856,796 + -0.9 856,796 + -1.2 856,796 + -0.8 856,796 + +0.3 856,796 + -0.1 856,797 - -0.3 856,797 - +2.1 856,797 - +0.2 856,797 - -2.9 856,797 - -0.3 856,797 - +0.5 856,797 - +1.4 856,797 - -0.2 856,923 - MPMX19_04490 0.22 +0.3 857,249 + MPMX19_04490 0.63 +1.8 857,249 + MPMX19_04490 0.63 -1.3 857,249 + MPMX19_04490 0.63 -0.7 857,249 + MPMX19_04490 0.63 -1.5 857,249 + MPMX19_04490 0.63 -2.7 857,249 + MPMX19_04490 0.63 +0.8 857,249 + MPMX19_04490 0.63 -1.1 857,249 + MPMX19_04490 0.63 -0.6 857,249 + MPMX19_04490 0.63 +0.0 857,250 - MPMX19_04490 0.63 -1.6 857,250 - MPMX19_04490 0.63 +0.5 857,250 - MPMX19_04490 0.63 -0.6 857,250 - MPMX19_04490 0.63 +0.7 857,250 - MPMX19_04490 0.63 -1.3 857,250 - MPMX19_04490 0.63 -0.7 857,250 - MPMX19_04490 0.63 +0.2 857,250 - MPMX19_04490 0.63 -1.2 857,250 - MPMX19_04490 0.63 -1.2 857,250 - MPMX19_04490 0.63 -1.6 857,250 - MPMX19_04490 0.63 -1.3 857,435 + MPMX19_04490 0.86 +0.4 857,435 + MPMX19_04490 0.86 -0.4 857,435 + MPMX19_04490 0.86 +0.4 857,435 + MPMX19_04490 0.86 +0.4 857,436 - MPMX19_04490 0.87 -0.7 857,436 - MPMX19_04490 0.87 -0.9 857,436 - MPMX19_04490 0.87 +0.2 857,546 + +0.4 857,546 + -1.0 857,546 + -0.7 857,546 + -0.6 857,547 - -0.2
Or see this region's nucleotide sequence