Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04475 and MPMX19_04476 are separated by 185 nucleotides MPMX19_04476 and MPMX19_04477 are separated by 641 nucleotides
MPMX19_04475: MPMX19_04475 - IS701 family transposase ISPye15, at 842,288 to 843,532
_04475
MPMX19_04476: MPMX19_04476 - hypothetical protein, at 843,718 to 844,134
_04476
MPMX19_04477: MPMX19_04477 - hypothetical protein, at 844,776 to 845,339
_04477
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.865 kb on + strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.866 kb on - strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.913 kb on + strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.914 kb on - strand, within MPMX19_04475 at 842.984 kb on + strand, within MPMX19_04475 at 842.985 kb on - strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.072 kb on + strand, within MPMX19_04475 at 843.073 kb on - strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.114 kb on + strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.115 kb on - strand, within MPMX19_04475 at 843.168 kb on + strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.169 kb on - strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.196 kb on + strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.197 kb on - strand, within MPMX19_04475 at 843.310 kb on + strand, within MPMX19_04475 at 843.311 kb on - strand, within MPMX19_04475 at 843.347 kb on - strand, within MPMX19_04475 at 843.498 kb on - strand at 843.498 kb on - strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.585 kb on + strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.586 kb on - strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.591 kb on + strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.592 kb on - strand at 843.633 kb on - strand at 843.633 kb on - strand at 843.638 kb on + strand at 843.638 kb on + strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.639 kb on - strand at 843.735 kb on + strand at 843.735 kb on + strand at 843.736 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 843.740 kb on - strand at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.136 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.195 kb on - strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.257 kb on + strand at 844.258 kb on - strand at 844.258 kb on - strand at 844.312 kb on + strand at 844.364 kb on + strand at 844.551 kb on + strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.706 kb on - strand at 844.706 kb on - strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.778 kb on - strand at 844.778 kb on - strand at 844.778 kb on - strand at 845.092 kb on + strand, within MPMX19_04477 at 845.092 kb on + strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 842,865 + MPMX19_04475 0.46 +0.3 842,865 + MPMX19_04475 0.46 -1.8 842,865 + MPMX19_04475 0.46 -0.3 842,865 + MPMX19_04475 0.46 -1.8 842,865 + MPMX19_04475 0.46 -0.3 842,865 + MPMX19_04475 0.46 -0.2 842,865 + MPMX19_04475 0.46 -1.2 842,866 - MPMX19_04475 0.46 -0.8 842,866 - MPMX19_04475 0.46 -1.2 842,866 - MPMX19_04475 0.46 -2.2 842,913 + MPMX19_04475 0.50 +0.3 842,913 + MPMX19_04475 0.50 +0.4 842,913 + MPMX19_04475 0.50 +1.8 842,913 + MPMX19_04475 0.50 +1.1 842,913 + MPMX19_04475 0.50 -1.3 842,913 + MPMX19_04475 0.50 +0.0 842,914 - MPMX19_04475 0.50 -0.2 842,914 - MPMX19_04475 0.50 +1.4 842,914 - MPMX19_04475 0.50 -1.9 842,984 + MPMX19_04475 0.56 -1.1 842,985 - MPMX19_04475 0.56 +0.4 843,072 + MPMX19_04475 0.63 -1.0 843,072 + MPMX19_04475 0.63 -0.5 843,072 + MPMX19_04475 0.63 +1.1 843,072 + MPMX19_04475 0.63 -0.8 843,073 - MPMX19_04475 0.63 +0.0 843,114 + MPMX19_04475 0.66 -0.5 843,114 + MPMX19_04475 0.66 -0.1 843,114 + MPMX19_04475 0.66 +0.3 843,114 + MPMX19_04475 0.66 -0.2 843,114 + MPMX19_04475 0.66 +0.3 843,114 + MPMX19_04475 0.66 -1.0 843,114 + MPMX19_04475 0.66 -0.5 843,114 + MPMX19_04475 0.66 +0.7 843,114 + MPMX19_04475 0.66 -0.3 843,114 + MPMX19_04475 0.66 +0.0 843,115 - MPMX19_04475 0.66 -1.0 843,115 - MPMX19_04475 0.66 -1.0 843,115 - MPMX19_04475 0.66 -0.2 843,115 - MPMX19_04475 0.66 -0.3 843,115 - MPMX19_04475 0.66 -0.7 843,115 - MPMX19_04475 0.66 +0.4 843,115 - MPMX19_04475 0.66 +0.4 843,168 + MPMX19_04475 0.71 +0.3 843,169 - MPMX19_04475 0.71 -0.4 843,169 - MPMX19_04475 0.71 +0.0 843,169 - MPMX19_04475 0.71 -0.1 843,196 + MPMX19_04475 0.73 -1.2 843,196 + MPMX19_04475 0.73 +0.6 843,196 + MPMX19_04475 0.73 -1.4 843,196 + MPMX19_04475 0.73 +0.7 843,196 + MPMX19_04475 0.73 -0.9 843,196 + MPMX19_04475 0.73 -0.5 843,197 - MPMX19_04475 0.73 +0.3 843,197 - MPMX19_04475 0.73 -0.7 843,197 - MPMX19_04475 0.73 -0.2 843,197 - MPMX19_04475 0.73 +0.5 843,197 - MPMX19_04475 0.73 -0.7 843,310 + MPMX19_04475 0.82 -0.8 843,311 - MPMX19_04475 0.82 +0.7 843,347 - MPMX19_04475 0.85 +1.1 843,498 - +0.4 843,498 - -2.7 843,585 + -1.6 843,585 + -0.5 843,585 + +0.4 843,585 + -0.9 843,585 + +0.3 843,585 + -0.3 843,585 + -1.3 843,585 + -0.2 843,586 - -0.6 843,586 - -0.3 843,586 - -1.2 843,586 - +1.8 843,591 + -1.1 843,591 + -0.5 843,591 + -1.2 843,591 + -1.2 843,591 + -0.3 843,591 + -0.1 843,591 + +0.0 843,591 + +0.5 843,591 + -1.2 843,591 + -0.6 843,591 + +0.8 843,592 - +0.3 843,592 - -0.5 843,592 - -0.3 843,592 - +1.8 843,592 - -0.1 843,633 - +1.8 843,633 - +1.0 843,638 + +0.1 843,638 + +0.0 843,639 - +0.4 843,639 - +1.1 843,639 - -1.0 843,639 - +0.4 843,735 + -0.4 843,735 + -0.7 843,736 - -1.0 843,740 - +1.2 843,740 - +1.1 843,740 - -0.0 843,740 - -0.1 843,740 - -0.8 843,740 - +0.5 844,036 + MPMX19_04476 0.76 +0.2 844,036 + MPMX19_04476 0.76 +0.3 844,036 + MPMX19_04476 0.76 -1.6 844,036 + MPMX19_04476 0.76 +0.3 844,036 + MPMX19_04476 0.76 -0.3 844,036 + MPMX19_04476 0.76 +0.1 844,036 + MPMX19_04476 0.76 -0.2 844,036 + MPMX19_04476 0.76 +0.6 844,036 + MPMX19_04476 0.76 +1.8 844,036 + MPMX19_04476 0.76 -1.5 844,036 + MPMX19_04476 0.76 -0.4 844,037 - MPMX19_04476 0.76 +0.4 844,037 - MPMX19_04476 0.76 -2.3 844,037 - MPMX19_04476 0.76 -1.2 844,037 - MPMX19_04476 0.76 -0.3 844,037 - MPMX19_04476 0.76 -2.1 844,037 - MPMX19_04476 0.76 -1.1 844,037 - MPMX19_04476 0.76 -0.3 844,037 - MPMX19_04476 0.76 -0.5 844,037 - MPMX19_04476 0.76 -0.5 844,037 - MPMX19_04476 0.76 -1.3 844,037 - MPMX19_04476 0.76 -0.6 844,052 + MPMX19_04476 0.80 +1.4 844,052 + MPMX19_04476 0.80 +0.1 844,052 + MPMX19_04476 0.80 -2.5 844,052 + MPMX19_04476 0.80 +0.1 844,053 - MPMX19_04476 0.80 +0.3 844,053 - MPMX19_04476 0.80 -0.3 844,053 - MPMX19_04476 0.80 -1.0 844,053 - MPMX19_04476 0.80 +0.5 844,053 - MPMX19_04476 0.80 -2.0 844,136 + -1.5 844,162 + -2.2 844,162 + -0.9 844,162 + -0.3 844,162 + +0.7 844,163 - -0.7 844,163 - -0.6 844,163 - -0.3 844,163 - +0.3 844,183 + -2.4 844,184 - -0.4 844,194 + +1.0 844,194 + -1.9 844,194 + -0.5 844,195 - -0.1 844,207 + -0.9 844,207 + -0.5 844,207 + -1.3 844,207 + -0.2 844,207 + +1.0 844,207 + -0.2 844,207 + -1.5 844,207 + -2.0 844,208 - -0.7 844,208 - +0.5 844,208 - -1.6 844,208 - +0.3 844,257 + -2.7 844,258 - +0.9 844,258 - -0.2 844,312 + -1.3 844,364 + -0.9 844,551 + -0.9 844,552 - -1.7 844,552 - -2.9 844,552 - -0.9 844,552 - -0.7 844,552 - -1.8 844,703 + +0.6 844,703 + +0.7 844,703 + -0.3 844,704 - -0.4 844,704 - -0.1 844,704 - -0.2 844,704 - -0.7 844,704 - +0.4 844,704 - +0.0 844,704 - -0.5 844,704 - -1.0 844,706 - -1.0 844,706 - -1.2 844,777 + -1.3 844,777 + +0.7 844,777 + +1.8 844,778 - -0.8 844,778 - -0.4 844,778 - +1.0 845,092 + MPMX19_04477 0.56 -0.4 845,092 + MPMX19_04477 0.56 -1.0 845,093 - MPMX19_04477 0.56 +0.8 845,093 - MPMX19_04477 0.56 +0.4 845,093 - MPMX19_04477 0.56 -0.5 845,104 + MPMX19_04477 0.58 +0.8 845,104 + MPMX19_04477 0.58 -0.4 845,105 - MPMX19_04477 0.58 -0.4 845,105 - MPMX19_04477 0.58 -0.8 845,105 - MPMX19_04477 0.58 +0.4 845,105 - MPMX19_04477 0.58 -0.4
Or see this region's nucleotide sequence