Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04468 and MPMX19_04469 overlap by 56 nucleotides MPMX19_04469 and MPMX19_04470 are separated by 502 nucleotides MPMX19_04470 and MPMX19_04471 are separated by 825 nucleotides
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
MPMX19_04469: MPMX19_04469 - hypothetical protein, at 835,231 to 835,497
_04469
MPMX19_04470: MPMX19_04470 - hypothetical protein, at 836,000 to 836,410
_04470
MPMX19_04471: MPMX19_04471 - Bifunctional protein GlmU, at 837,236 to 838,588
_04471
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 835.006 kb on - strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.047 kb on + strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.048 kb on - strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.065 kb on + strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.066 kb on - strand, within MPMX19_04468 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.467 kb on + strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.468 kb on - strand, within MPMX19_04469 at 835.802 kb on + strand at 835.802 kb on + strand at 835.803 kb on - strand at 835.805 kb on + strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.806 kb on - strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.813 kb on + strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.814 kb on - strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.817 kb on + strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.818 kb on - strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.837 kb on + strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.838 kb on - strand at 835.876 kb on + strand at 835.876 kb on + strand at 835.877 kb on - strand at 835.877 kb on - strand at 835.902 kb on + strand at 835.902 kb on + strand at 835.949 kb on + strand at 835.950 kb on - strand at 835.950 kb on - strand at 835.950 kb on - strand at 836.238 kb on - strand, within MPMX19_04470 at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.591 kb on + strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.592 kb on - strand at 836.614 kb on + strand at 836.614 kb on + strand at 836.614 kb on + strand at 836.614 kb on + strand at 836.615 kb on - strand at 836.664 kb on + strand at 836.664 kb on + strand at 836.664 kb on + strand at 836.664 kb on + strand at 836.664 kb on + strand at 836.664 kb on + strand at 836.665 kb on - strand at 836.665 kb on - strand at 836.665 kb on - strand at 836.698 kb on + strand at 836.699 kb on - strand at 836.712 kb on + strand at 836.712 kb on + strand at 836.712 kb on + strand at 836.712 kb on + strand at 836.713 kb on - strand at 836.713 kb on - strand at 836.713 kb on - strand at 836.713 kb on - strand at 836.751 kb on + strand at 836.893 kb on + strand at 836.893 kb on + strand at 836.893 kb on + strand at 836.894 kb on - strand at 836.894 kb on - strand at 836.894 kb on - strand at 836.894 kb on - strand at 836.894 kb on - strand at 837.032 kb on + strand at 837.033 kb on - strand at 837.033 kb on - strand at 837.157 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand at 837.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 835,006 - MPMX19_04468 0.69 -0.2 835,047 + MPMX19_04468 0.74 -0.2 835,047 + MPMX19_04468 0.74 -2.7 835,047 + MPMX19_04468 0.74 +0.4 835,047 + MPMX19_04468 0.74 -1.6 835,047 + MPMX19_04468 0.74 -1.6 835,047 + MPMX19_04468 0.74 -0.2 835,047 + MPMX19_04468 0.74 -1.3 835,047 + MPMX19_04468 0.74 -0.1 835,047 + MPMX19_04468 0.74 +0.3 835,047 + MPMX19_04468 0.74 -0.6 835,048 - MPMX19_04468 0.74 +0.7 835,048 - MPMX19_04468 0.74 +0.2 835,048 - MPMX19_04468 0.74 -0.2 835,048 - MPMX19_04468 0.74 -0.2 835,048 - MPMX19_04468 0.74 -0.9 835,048 - MPMX19_04468 0.74 -1.0 835,048 - MPMX19_04468 0.74 -1.7 835,048 - MPMX19_04468 0.74 -0.2 835,048 - MPMX19_04468 0.74 -1.3 835,048 - MPMX19_04468 0.74 -2.6 835,048 - MPMX19_04468 0.74 -1.4 835,065 + MPMX19_04468 0.75 -0.7 835,065 + MPMX19_04468 0.75 -0.6 835,066 - MPMX19_04468 0.76 -0.7 835,066 - MPMX19_04468 0.76 -1.5 835,066 - MPMX19_04468 0.76 -0.9 835,467 + MPMX19_04469 0.88 -2.7 835,467 + MPMX19_04469 0.88 -1.0 835,467 + MPMX19_04469 0.88 -0.0 835,467 + MPMX19_04469 0.88 -0.5 835,467 + MPMX19_04469 0.88 -0.5 835,467 + MPMX19_04469 0.88 -0.8 835,467 + MPMX19_04469 0.88 +0.9 835,468 - MPMX19_04469 0.89 -0.3 835,468 - MPMX19_04469 0.89 -0.6 835,468 - MPMX19_04469 0.89 -0.6 835,468 - MPMX19_04469 0.89 -1.0 835,802 + -0.4 835,802 + -1.5 835,803 - +0.5 835,805 + +0.0 835,806 - +0.3 835,806 - -1.5 835,806 - +1.3 835,813 + -0.7 835,813 + -0.6 835,813 + +0.0 835,813 + -1.6 835,813 + -1.7 835,813 + -0.6 835,813 + -1.1 835,813 + -1.2 835,813 + -2.1 835,814 - -1.2 835,814 - -1.1 835,814 - -0.2 835,814 - -0.2 835,814 - +0.8 835,814 - +0.6 835,814 - +0.3 835,814 - +0.4 835,814 - -1.6 835,814 - -1.5 835,814 - -0.5 835,814 - -0.1 835,817 + -0.3 835,817 + +1.2 835,817 + -1.7 835,817 + +1.1 835,817 + +0.8 835,817 + +1.8 835,818 - -1.0 835,818 - -0.9 835,818 - +0.3 835,818 - +0.3 835,818 - +2.4 835,818 - +0.8 835,837 + -1.1 835,837 + -0.1 835,837 + -0.0 835,837 + -1.2 835,837 + +0.3 835,837 + -2.0 835,837 + -0.6 835,837 + +0.1 835,837 + -0.3 835,837 + -1.5 835,837 + +0.1 835,837 + -1.0 835,837 + +0.8 835,837 + -1.7 835,837 + +0.3 835,837 + -0.1 835,837 + +0.3 835,838 - -0.0 835,838 - -0.4 835,838 - -0.5 835,838 - +0.9 835,838 - +2.8 835,838 - -1.3 835,838 - -0.9 835,838 - -0.6 835,838 - -0.4 835,838 - +0.4 835,838 - -1.3 835,838 - -1.6 835,838 - -1.2 835,838 - -0.3 835,876 + -0.7 835,876 + +1.8 835,877 - +0.2 835,877 - -1.1 835,902 + +1.3 835,902 + +1.7 835,949 + -1.0 835,950 - +0.0 835,950 - -0.6 835,950 - -0.5 836,238 - MPMX19_04470 0.58 -2.0 836,591 + -1.2 836,591 + -0.5 836,591 + +0.0 836,591 + +1.1 836,591 + -1.0 836,591 + +0.7 836,591 + -1.5 836,591 + -0.3 836,591 + -0.6 836,591 + -0.7 836,592 - +0.3 836,592 - -0.2 836,592 - +0.8 836,592 - -1.8 836,592 - -2.0 836,592 - +1.1 836,592 - -0.2 836,592 - +0.5 836,592 - +0.3 836,592 - -0.6 836,592 - +0.8 836,592 - -1.9 836,614 + +0.3 836,614 + -1.4 836,614 + -0.2 836,614 + -0.7 836,615 - +0.7 836,664 + +0.1 836,664 + -0.4 836,664 + -1.5 836,664 + -0.7 836,664 + -0.3 836,664 + -0.4 836,665 - -0.6 836,665 - -0.3 836,665 - -0.4 836,698 + -0.3 836,699 - +0.2 836,712 + -0.7 836,712 + -0.4 836,712 + -1.5 836,712 + -0.5 836,713 - +1.3 836,713 - +1.1 836,713 - -2.0 836,713 - -0.1 836,751 + -0.9 836,893 + -0.8 836,893 + +0.6 836,893 + -0.7 836,894 - +0.8 836,894 - +0.4 836,894 - -0.4 836,894 - -0.7 836,894 - -1.6 837,032 + -0.2 837,033 - +0.6 837,033 - +0.1 837,157 + -0.5 837,176 + -0.7 837,176 + -2.6 837,176 + -1.0 837,176 + -0.2 837,176 + -1.0 837,176 + -0.5 837,176 + -2.0
Or see this region's nucleotide sequence