Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04455

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04453 and MPMX19_04454 are separated by 86 nucleotidesMPMX19_04454 and MPMX19_04455 are separated by 433 nucleotidesMPMX19_04455 and MPMX19_04456 are separated by 99 nucleotides MPMX19_04453: MPMX19_04453 - Aminoalkylphosphonate N-acetyltransferase, at 821,092 to 821,535 _04453 MPMX19_04454: MPMX19_04454 - hypothetical protein, at 821,622 to 821,837 _04454 MPMX19_04455: MPMX19_04455 - Arabinose 5-phosphate isomerase KdsD, at 822,271 to 822,726 _04455 MPMX19_04456: MPMX19_04456 - Histone deacetylase-like amidohydrolase, at 822,826 to 823,755 _04456 Position (kb) 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.323 kb on + strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.324 kb on - strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.329 kb on + strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.330 kb on - strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.368 kb on + strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.369 kb on - strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.479 kb on + strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.480 kb on - strand, within MPMX19_04453at 821.547 kb on + strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.548 kb on - strandat 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.777 kb on + strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.778 kb on - strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.779 kb on + strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 821.780 kb on - strand, within MPMX19_04454at 822.045 kb on + strandat 822.045 kb on + strandat 822.045 kb on + strandat 822.046 kb on - strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.088 kb on + strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.089 kb on - strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.715 kb on + strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.716 kb on - strandat 822.747 kb on + strandat 822.748 kb on - strandat 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.012 kb on + strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.013 kb on - strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.051 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.393 kb on + strand, within MPMX19_04456at 823.394 kb on - strand, within MPMX19_04456at 823.462 kb on + strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.463 kb on - strand, within MPMX19_04456at 823.693 kb on + strandat 823.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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821,323 + MPMX19_04453 0.52 +0.4
821,323 + MPMX19_04453 0.52 -1.3
821,323 + MPMX19_04453 0.52 -1.4
821,323 + MPMX19_04453 0.52 -0.9
821,323 + MPMX19_04453 0.52 -2.3
821,323 + MPMX19_04453 0.52 -1.1
821,323 + MPMX19_04453 0.52 -0.0
821,323 + MPMX19_04453 0.52 -1.2
821,323 + MPMX19_04453 0.52 -0.2
821,323 + MPMX19_04453 0.52 +0.0
821,324 - MPMX19_04453 0.52 -1.9
821,324 - MPMX19_04453 0.52 -0.7
821,324 - MPMX19_04453 0.52 +0.1
821,324 - MPMX19_04453 0.52 +0.8
821,324 - MPMX19_04453 0.52 +0.3
821,324 - MPMX19_04453 0.52 -0.7
821,324 - MPMX19_04453 0.52 -2.4
821,324 - MPMX19_04453 0.52 -0.4
821,324 - MPMX19_04453 0.52 +0.7
821,324 - MPMX19_04453 0.52 -0.8
821,329 + MPMX19_04453 0.53 -1.2
821,329 + MPMX19_04453 0.53 +0.1
821,329 + MPMX19_04453 0.53 -1.2
821,329 + MPMX19_04453 0.53 +0.6
821,329 + MPMX19_04453 0.53 -0.3
821,329 + MPMX19_04453 0.53 -0.1
821,329 + MPMX19_04453 0.53 -1.0
821,329 + MPMX19_04453 0.53 -1.0
821,329 + MPMX19_04453 0.53 +2.3
821,329 + MPMX19_04453 0.53 -0.2
821,329 + MPMX19_04453 0.53 -0.6
821,329 + MPMX19_04453 0.53 -0.2
821,329 + MPMX19_04453 0.53 -0.9
821,329 + MPMX19_04453 0.53 +0.3
821,329 + MPMX19_04453 0.53 -1.9
821,329 + MPMX19_04453 0.53 -2.3
821,329 + MPMX19_04453 0.53 +0.8
821,329 + MPMX19_04453 0.53 +0.2
821,329 + MPMX19_04453 0.53 -2.3
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 -1.0
821,329 + MPMX19_04453 0.53 +0.3
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 +0.3
821,329 + MPMX19_04453 0.53 -0.8
821,329 + MPMX19_04453 0.53 -0.0
821,329 + MPMX19_04453 0.53 -2.0
821,329 + MPMX19_04453 0.53 +0.6
821,329 + MPMX19_04453 0.53 -1.2
821,329 + MPMX19_04453 0.53 +0.5
821,329 + MPMX19_04453 0.53 -0.4
821,329 + MPMX19_04453 0.53 -1.7
821,329 + MPMX19_04453 0.53 -1.6
821,329 + MPMX19_04453 0.53 -1.1
821,329 + MPMX19_04453 0.53 -1.6
821,330 - MPMX19_04453 0.54 -0.6
821,330 - MPMX19_04453 0.54 -0.6
821,330 - MPMX19_04453 0.54 -0.1
821,330 - MPMX19_04453 0.54 -0.8
821,330 - MPMX19_04453 0.54 -2.1
821,330 - MPMX19_04453 0.54 -0.2
821,330 - MPMX19_04453 0.54 -0.2
821,330 - MPMX19_04453 0.54 -0.1
821,330 - MPMX19_04453 0.54 -0.5
821,330 - MPMX19_04453 0.54 +0.1
821,330 - MPMX19_04453 0.54 +0.3
821,330 - MPMX19_04453 0.54 -0.4
821,330 - MPMX19_04453 0.54 +0.5
821,330 - MPMX19_04453 0.54 -1.0
821,330 - MPMX19_04453 0.54 -1.9
821,330 - MPMX19_04453 0.54 -0.5
821,330 - MPMX19_04453 0.54 -0.7
821,330 - MPMX19_04453 0.54 -1.0
821,330 - MPMX19_04453 0.54 +0.3
821,330 - MPMX19_04453 0.54 +0.1
821,330 - MPMX19_04453 0.54 -0.7
821,330 - MPMX19_04453 0.54 -1.0
821,330 - MPMX19_04453 0.54 +1.5
821,330 - MPMX19_04453 0.54 -1.2
821,330 - MPMX19_04453 0.54 +0.5
821,330 - MPMX19_04453 0.54 -1.4
821,330 - MPMX19_04453 0.54 +0.2
821,330 - MPMX19_04453 0.54 -0.1
821,330 - MPMX19_04453 0.54 +1.5
821,330 - MPMX19_04453 0.54 -1.6
821,330 - MPMX19_04453 0.54 +1.0
821,330 - MPMX19_04453 0.54 +0.3
821,368 + MPMX19_04453 0.62 -0.3
821,368 + MPMX19_04453 0.62 -2.0
821,368 + MPMX19_04453 0.62 -1.3
821,368 + MPMX19_04453 0.62 +0.3
821,368 + MPMX19_04453 0.62 +0.3
821,368 + MPMX19_04453 0.62 -0.4
821,368 + MPMX19_04453 0.62 -1.7
821,369 - MPMX19_04453 0.62 +0.7
821,369 - MPMX19_04453 0.62 +0.3
821,369 - MPMX19_04453 0.62 -1.4
821,369 - MPMX19_04453 0.62 -0.5
821,479 + MPMX19_04453 0.87 +0.3
821,479 + MPMX19_04453 0.87 -1.0
821,479 + MPMX19_04453 0.87 -1.1
821,479 + MPMX19_04453 0.87 -1.7
821,480 - MPMX19_04453 0.87 +0.1
821,480 - MPMX19_04453 0.87 +0.3
821,480 - MPMX19_04453 0.87 -1.0
821,480 - MPMX19_04453 0.87 -0.7
821,480 - MPMX19_04453 0.87 -1.2
821,480 - MPMX19_04453 0.87 +0.3
821,480 - MPMX19_04453 0.87 -2.1
821,480 - MPMX19_04453 0.87 +0.1
821,480 - MPMX19_04453 0.87 +0.5
821,480 - MPMX19_04453 0.87 -0.6
821,480 - MPMX19_04453 0.87 -1.6
821,547 + +0.1
821,548 - -0.8
821,548 - -0.3
821,548 - +1.1
821,548 - +0.7
821,548 - -0.6
821,777 + MPMX19_04454 0.72 -0.5
821,777 + MPMX19_04454 0.72 +0.6
821,777 + MPMX19_04454 0.72 -1.5
821,777 + MPMX19_04454 0.72 +0.6
821,777 + MPMX19_04454 0.72 +0.1
821,777 + MPMX19_04454 0.72 -0.1
821,777 + MPMX19_04454 0.72 -1.2
821,777 + MPMX19_04454 0.72 -0.0
821,777 + MPMX19_04454 0.72 -2.4
821,777 + MPMX19_04454 0.72 -0.2
821,778 - MPMX19_04454 0.72 -1.7
821,778 - MPMX19_04454 0.72 -0.6
821,778 - MPMX19_04454 0.72 -2.5
821,778 - MPMX19_04454 0.72 -2.0
821,778 - MPMX19_04454 0.72 +1.7
821,778 - MPMX19_04454 0.72 +0.8
821,778 - MPMX19_04454 0.72 +0.1
821,778 - MPMX19_04454 0.72 +0.0
821,778 - MPMX19_04454 0.72 +0.6
821,778 - MPMX19_04454 0.72 -0.2
821,778 - MPMX19_04454 0.72 +0.2
821,778 - MPMX19_04454 0.72 -1.2
821,779 + MPMX19_04454 0.73 +0.1
821,779 + MPMX19_04454 0.73 -0.6
821,779 + MPMX19_04454 0.73 +0.5
821,779 + MPMX19_04454 0.73 +0.3
821,779 + MPMX19_04454 0.73 +0.7
821,780 - MPMX19_04454 0.73 -1.0
821,780 - MPMX19_04454 0.73 +0.9
821,780 - MPMX19_04454 0.73 -0.1
822,045 + +0.8
822,045 + -1.9
822,045 + -0.5
822,046 - +0.4
822,088 + -0.7
822,088 + -1.4
822,088 + -0.2
822,088 + -2.2
822,088 + +0.7
822,089 - -0.2
822,089 - -0.3
822,089 - -0.2
822,089 - -1.6
822,089 - -0.6
822,715 + -1.5
822,715 + -0.5
822,715 + -1.5
822,715 + +0.3
822,715 + -0.1
822,715 + -0.5
822,715 + -0.4
822,715 + -2.7
822,715 + -0.2
822,715 + -1.6
822,715 + -0.8
822,715 + -1.8
822,715 + -1.1
822,716 - -0.5
822,716 - +0.5
822,716 - -1.7
822,716 - -2.0
822,716 - +0.8
822,716 - +1.0
822,716 - -0.5
822,716 - -0.2
822,716 - +0.2
822,716 - -0.7
822,716 - -1.6
822,716 - -1.2
822,716 - -0.8
822,716 - -0.5
822,747 + -0.0
822,748 - -2.5
823,012 + MPMX19_04456 0.20 -0.2
823,012 + MPMX19_04456 0.20 -1.1
823,012 + MPMX19_04456 0.20 +0.4
823,012 + MPMX19_04456 0.20 -1.7
823,012 + MPMX19_04456 0.20 -0.3
823,012 + MPMX19_04456 0.20 -1.0
823,012 + MPMX19_04456 0.20 -1.2
823,012 + MPMX19_04456 0.20 -0.9
823,012 + MPMX19_04456 0.20 -0.6
823,012 + MPMX19_04456 0.20 -1.3
823,013 - MPMX19_04456 0.20 -1.1
823,013 - MPMX19_04456 0.20 +0.8
823,013 - MPMX19_04456 0.20 +0.5
823,013 - MPMX19_04456 0.20 -0.2
823,013 - MPMX19_04456 0.20 -0.4
823,013 - MPMX19_04456 0.20 -0.6
823,013 - MPMX19_04456 0.20 -1.2
823,013 - MPMX19_04456 0.20 -0.7
823,013 - MPMX19_04456 0.20 -0.4
823,013 - MPMX19_04456 0.20 -0.6
823,013 - MPMX19_04456 0.20 -2.2
823,013 - MPMX19_04456 0.20 -1.0
823,051 + MPMX19_04456 0.24 +0.7
823,051 + MPMX19_04456 0.24 +0.5
823,393 + MPMX19_04456 0.61 -0.9
823,393 + MPMX19_04456 0.61 +1.0
823,393 + MPMX19_04456 0.61 -0.7
823,394 - MPMX19_04456 0.61 +0.5
823,462 + MPMX19_04456 0.68 -1.4
823,463 - MPMX19_04456 0.68 -1.2
823,463 - MPMX19_04456 0.68 -0.7
823,463 - MPMX19_04456 0.68 -1.3
823,463 - MPMX19_04456 0.68 -0.7
823,463 - MPMX19_04456 0.68 +0.1
823,463 - MPMX19_04456 0.68 -0.5
823,693 + -1.1
823,693 + -1.7

Or see this region's nucleotide sequence