Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04434

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04433 and MPMX19_04434 are separated by 141 nucleotidesMPMX19_04434 and MPMX19_04435 are separated by 1 nucleotides MPMX19_04433: MPMX19_04433 - Transcriptional repressor IclR, at 797,879 to 798,796 _04433 MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813 _04434 MPMX19_04435: MPMX19_04435 - Succinate--CoA ligase [ADP-forming] subunit beta, at 799,815 to 801,014 _04435 Position (kb) 798 799 800Strain fitness (log2 ratio) -2 -1 0 1 2at 798.123 kb on + strand, within MPMX19_04433at 798.123 kb on + strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.124 kb on - strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.315 kb on + strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.316 kb on - strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.444 kb on + strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.445 kb on - strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.495 kb on + strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.496 kb on - strand, within MPMX19_04433at 798.504 kb on + strand, within MPMX19_04433at 798.504 kb on + strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.505 kb on - strand, within MPMX19_04433at 798.876 kb on + strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.723 kb on - strand, within MPMX19_04434at 800.152 kb on + strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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798,123 + MPMX19_04433 0.27 -0.5
798,123 + MPMX19_04433 0.27 -0.3
798,124 - MPMX19_04433 0.27 +0.3
798,124 - MPMX19_04433 0.27 -0.6
798,315 + MPMX19_04433 0.47 -2.5
798,315 + MPMX19_04433 0.47 +1.8
798,315 + MPMX19_04433 0.47 -0.3
798,315 + MPMX19_04433 0.47 -0.2
798,315 + MPMX19_04433 0.47 -0.9
798,315 + MPMX19_04433 0.47 -0.4
798,315 + MPMX19_04433 0.47 -0.4
798,315 + MPMX19_04433 0.47 -2.6
798,316 - MPMX19_04433 0.48 -0.5
798,316 - MPMX19_04433 0.48 -1.5
798,316 - MPMX19_04433 0.48 -0.3
798,316 - MPMX19_04433 0.48 -0.7
798,316 - MPMX19_04433 0.48 -0.5
798,316 - MPMX19_04433 0.48 +0.3
798,316 - MPMX19_04433 0.48 +0.3
798,316 - MPMX19_04433 0.48 +0.8
798,316 - MPMX19_04433 0.48 +0.2
798,444 + MPMX19_04433 0.62 +1.3
798,444 + MPMX19_04433 0.62 -1.2
798,444 + MPMX19_04433 0.62 +0.3
798,444 + MPMX19_04433 0.62 -1.0
798,444 + MPMX19_04433 0.62 -0.4
798,444 + MPMX19_04433 0.62 -0.8
798,444 + MPMX19_04433 0.62 -0.2
798,444 + MPMX19_04433 0.62 -1.6
798,444 + MPMX19_04433 0.62 -0.2
798,444 + MPMX19_04433 0.62 -0.7
798,445 - MPMX19_04433 0.62 -2.1
798,445 - MPMX19_04433 0.62 +1.0
798,445 - MPMX19_04433 0.62 -0.2
798,445 - MPMX19_04433 0.62 -0.3
798,445 - MPMX19_04433 0.62 +0.4
798,445 - MPMX19_04433 0.62 +1.3
798,445 - MPMX19_04433 0.62 -0.7
798,445 - MPMX19_04433 0.62 -0.7
798,445 - MPMX19_04433 0.62 -1.1
798,445 - MPMX19_04433 0.62 -1.0
798,445 - MPMX19_04433 0.62 -1.8
798,445 - MPMX19_04433 0.62 -0.3
798,495 + MPMX19_04433 0.67 +0.2
798,495 + MPMX19_04433 0.67 -0.4
798,495 + MPMX19_04433 0.67 -0.9
798,495 + MPMX19_04433 0.67 +0.8
798,495 + MPMX19_04433 0.67 -0.5
798,495 + MPMX19_04433 0.67 +0.5
798,495 + MPMX19_04433 0.67 -0.8
798,495 + MPMX19_04433 0.67 +0.1
798,495 + MPMX19_04433 0.67 -0.6
798,496 - MPMX19_04433 0.67 -0.6
798,496 - MPMX19_04433 0.67 +0.9
798,496 - MPMX19_04433 0.67 -1.4
798,496 - MPMX19_04433 0.67 -0.2
798,496 - MPMX19_04433 0.67 -0.4
798,496 - MPMX19_04433 0.67 -1.4
798,496 - MPMX19_04433 0.67 +1.2
798,504 + MPMX19_04433 0.68 -1.2
798,504 + MPMX19_04433 0.68 -0.2
798,505 - MPMX19_04433 0.68 -0.5
798,505 - MPMX19_04433 0.68 +0.7
798,505 - MPMX19_04433 0.68 -0.7
798,505 - MPMX19_04433 0.68 -0.3
798,876 + -0.0
798,877 - -0.0
798,877 - -0.0
798,877 - -1.0
798,965 - -1.0
798,965 - -1.5
798,965 - -0.1
798,965 - -0.2
799,599 + MPMX19_04434 0.75 +1.0
799,599 + MPMX19_04434 0.75 -0.8
799,599 + MPMX19_04434 0.75 -1.0
799,599 + MPMX19_04434 0.75 -1.0
799,599 + MPMX19_04434 0.75 +0.1
799,599 + MPMX19_04434 0.75 -0.9
799,599 + MPMX19_04434 0.75 -1.7
799,599 + MPMX19_04434 0.75 +0.6
799,600 - MPMX19_04434 0.76 -0.4
799,600 - MPMX19_04434 0.76 -1.0
799,600 - MPMX19_04434 0.76 -0.2
799,600 - MPMX19_04434 0.76 -2.1
799,600 - MPMX19_04434 0.76 +0.8
799,600 - MPMX19_04434 0.76 -2.2
799,600 - MPMX19_04434 0.76 +0.4
799,600 - MPMX19_04434 0.76 -0.1
799,600 - MPMX19_04434 0.76 +0.4
799,600 - MPMX19_04434 0.76 -1.1
799,723 - MPMX19_04434 0.90 -1.3
800,152 + MPMX19_04435 0.28 -0.7
800,153 - MPMX19_04435 0.28 -0.6
800,153 - MPMX19_04435 0.28 -0.9
800,153 - MPMX19_04435 0.28 +0.8
800,153 - MPMX19_04435 0.28 -1.1
800,233 + MPMX19_04435 0.35 +0.8
800,233 + MPMX19_04435 0.35 -1.3
800,233 + MPMX19_04435 0.35 -0.7
800,233 + MPMX19_04435 0.35 -1.0
800,233 + MPMX19_04435 0.35 -0.8
800,233 + MPMX19_04435 0.35 -0.1
800,233 + MPMX19_04435 0.35 +1.0
800,233 + MPMX19_04435 0.35 -0.1
800,435 - MPMX19_04435 0.52 -0.2
800,435 - MPMX19_04435 0.52 +1.1
800,435 - MPMX19_04435 0.52 -1.7
800,435 - MPMX19_04435 0.52 -2.0
800,516 - MPMX19_04435 0.58 +0.4
800,516 - MPMX19_04435 0.58 +0.8
800,516 - MPMX19_04435 0.58 -0.5
800,663 - MPMX19_04435 0.71 -0.7
800,663 - MPMX19_04435 0.71 -0.1
800,663 - MPMX19_04435 0.71 +0.8
800,663 - MPMX19_04435 0.71 +0.5
800,663 - MPMX19_04435 0.71 -0.9
800,663 - MPMX19_04435 0.71 -0.3
800,663 - MPMX19_04435 0.71 -0.9
800,663 - MPMX19_04435 0.71 -0.7
800,663 - MPMX19_04435 0.71 +0.6
800,663 - MPMX19_04435 0.71 +1.3
800,663 - MPMX19_04435 0.71 +0.0
800,698 + MPMX19_04435 0.74 +0.1
800,698 + MPMX19_04435 0.74 -0.2
800,698 + MPMX19_04435 0.74 -0.9
800,698 + MPMX19_04435 0.74 +2.0
800,698 + MPMX19_04435 0.74 -0.4
800,698 + MPMX19_04435 0.74 +1.3
800,698 + MPMX19_04435 0.74 +0.1
800,698 + MPMX19_04435 0.74 -0.2
800,698 + MPMX19_04435 0.74 -1.3

Or see this region's nucleotide sequence