Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04433 and MPMX19_04434 are separated by 141 nucleotides MPMX19_04434 and MPMX19_04435 are separated by 1 nucleotides
MPMX19_04433: MPMX19_04433 - Transcriptional repressor IclR, at 797,879 to 798,796
_04433
MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813
_04434
MPMX19_04435: MPMX19_04435 - Succinate--CoA ligase [ADP-forming] subunit beta, at 799,815 to 801,014
_04435
Position (kb)
798
799
800 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 798.123 kb on + strand, within MPMX19_04433 at 798.123 kb on + strand, within MPMX19_04433 at 798.124 kb on - strand, within MPMX19_04433 at 798.124 kb on - strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.315 kb on + strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.316 kb on - strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.444 kb on + strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.445 kb on - strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.495 kb on + strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.496 kb on - strand, within MPMX19_04433 at 798.504 kb on + strand, within MPMX19_04433 at 798.504 kb on + strand, within MPMX19_04433 at 798.505 kb on - strand, within MPMX19_04433 at 798.505 kb on - strand, within MPMX19_04433 at 798.505 kb on - strand, within MPMX19_04433 at 798.505 kb on - strand, within MPMX19_04433 at 798.876 kb on + strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.723 kb on - strand, within MPMX19_04434 at 800.152 kb on + strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 798,123 + MPMX19_04433 0.27 -0.5 798,123 + MPMX19_04433 0.27 -0.3 798,124 - MPMX19_04433 0.27 +0.3 798,124 - MPMX19_04433 0.27 -0.6 798,315 + MPMX19_04433 0.47 -2.5 798,315 + MPMX19_04433 0.47 +1.8 798,315 + MPMX19_04433 0.47 -0.3 798,315 + MPMX19_04433 0.47 -0.2 798,315 + MPMX19_04433 0.47 -0.9 798,315 + MPMX19_04433 0.47 -0.4 798,315 + MPMX19_04433 0.47 -0.4 798,315 + MPMX19_04433 0.47 -2.6 798,316 - MPMX19_04433 0.48 -0.5 798,316 - MPMX19_04433 0.48 -1.5 798,316 - MPMX19_04433 0.48 -0.3 798,316 - MPMX19_04433 0.48 -0.7 798,316 - MPMX19_04433 0.48 -0.5 798,316 - MPMX19_04433 0.48 +0.3 798,316 - MPMX19_04433 0.48 +0.3 798,316 - MPMX19_04433 0.48 +0.8 798,316 - MPMX19_04433 0.48 +0.2 798,444 + MPMX19_04433 0.62 +1.3 798,444 + MPMX19_04433 0.62 -1.2 798,444 + MPMX19_04433 0.62 +0.3 798,444 + MPMX19_04433 0.62 -1.0 798,444 + MPMX19_04433 0.62 -0.4 798,444 + MPMX19_04433 0.62 -0.8 798,444 + MPMX19_04433 0.62 -0.2 798,444 + MPMX19_04433 0.62 -1.6 798,444 + MPMX19_04433 0.62 -0.2 798,444 + MPMX19_04433 0.62 -0.7 798,445 - MPMX19_04433 0.62 -2.1 798,445 - MPMX19_04433 0.62 +1.0 798,445 - MPMX19_04433 0.62 -0.2 798,445 - MPMX19_04433 0.62 -0.3 798,445 - MPMX19_04433 0.62 +0.4 798,445 - MPMX19_04433 0.62 +1.3 798,445 - MPMX19_04433 0.62 -0.7 798,445 - MPMX19_04433 0.62 -0.7 798,445 - MPMX19_04433 0.62 -1.1 798,445 - MPMX19_04433 0.62 -1.0 798,445 - MPMX19_04433 0.62 -1.8 798,445 - MPMX19_04433 0.62 -0.3 798,495 + MPMX19_04433 0.67 +0.2 798,495 + MPMX19_04433 0.67 -0.4 798,495 + MPMX19_04433 0.67 -0.9 798,495 + MPMX19_04433 0.67 +0.8 798,495 + MPMX19_04433 0.67 -0.5 798,495 + MPMX19_04433 0.67 +0.5 798,495 + MPMX19_04433 0.67 -0.8 798,495 + MPMX19_04433 0.67 +0.1 798,495 + MPMX19_04433 0.67 -0.6 798,496 - MPMX19_04433 0.67 -0.6 798,496 - MPMX19_04433 0.67 +0.9 798,496 - MPMX19_04433 0.67 -1.4 798,496 - MPMX19_04433 0.67 -0.2 798,496 - MPMX19_04433 0.67 -0.4 798,496 - MPMX19_04433 0.67 -1.4 798,496 - MPMX19_04433 0.67 +1.2 798,504 + MPMX19_04433 0.68 -1.2 798,504 + MPMX19_04433 0.68 -0.2 798,505 - MPMX19_04433 0.68 -0.5 798,505 - MPMX19_04433 0.68 +0.7 798,505 - MPMX19_04433 0.68 -0.7 798,505 - MPMX19_04433 0.68 -0.3 798,876 + -0.0 798,877 - -0.0 798,877 - -0.0 798,877 - -1.0 798,965 - -1.0 798,965 - -1.5 798,965 - -0.1 798,965 - -0.2 799,599 + MPMX19_04434 0.75 +1.0 799,599 + MPMX19_04434 0.75 -0.8 799,599 + MPMX19_04434 0.75 -1.0 799,599 + MPMX19_04434 0.75 -1.0 799,599 + MPMX19_04434 0.75 +0.1 799,599 + MPMX19_04434 0.75 -0.9 799,599 + MPMX19_04434 0.75 -1.7 799,599 + MPMX19_04434 0.75 +0.6 799,600 - MPMX19_04434 0.76 -0.4 799,600 - MPMX19_04434 0.76 -1.0 799,600 - MPMX19_04434 0.76 -0.2 799,600 - MPMX19_04434 0.76 -2.1 799,600 - MPMX19_04434 0.76 +0.8 799,600 - MPMX19_04434 0.76 -2.2 799,600 - MPMX19_04434 0.76 +0.4 799,600 - MPMX19_04434 0.76 -0.1 799,600 - MPMX19_04434 0.76 +0.4 799,600 - MPMX19_04434 0.76 -1.1 799,723 - MPMX19_04434 0.90 -1.3 800,152 + MPMX19_04435 0.28 -0.7 800,153 - MPMX19_04435 0.28 -0.6 800,153 - MPMX19_04435 0.28 -0.9 800,153 - MPMX19_04435 0.28 +0.8 800,153 - MPMX19_04435 0.28 -1.1 800,233 + MPMX19_04435 0.35 +0.8 800,233 + MPMX19_04435 0.35 -1.3 800,233 + MPMX19_04435 0.35 -0.7 800,233 + MPMX19_04435 0.35 -1.0 800,233 + MPMX19_04435 0.35 -0.8 800,233 + MPMX19_04435 0.35 -0.1 800,233 + MPMX19_04435 0.35 +1.0 800,233 + MPMX19_04435 0.35 -0.1 800,435 - MPMX19_04435 0.52 -0.2 800,435 - MPMX19_04435 0.52 +1.1 800,435 - MPMX19_04435 0.52 -1.7 800,435 - MPMX19_04435 0.52 -2.0 800,516 - MPMX19_04435 0.58 +0.4 800,516 - MPMX19_04435 0.58 +0.8 800,516 - MPMX19_04435 0.58 -0.5 800,663 - MPMX19_04435 0.71 -0.7 800,663 - MPMX19_04435 0.71 -0.1 800,663 - MPMX19_04435 0.71 +0.8 800,663 - MPMX19_04435 0.71 +0.5 800,663 - MPMX19_04435 0.71 -0.9 800,663 - MPMX19_04435 0.71 -0.3 800,663 - MPMX19_04435 0.71 -0.9 800,663 - MPMX19_04435 0.71 -0.7 800,663 - MPMX19_04435 0.71 +0.6 800,663 - MPMX19_04435 0.71 +1.3 800,663 - MPMX19_04435 0.71 +0.0 800,698 + MPMX19_04435 0.74 +0.1 800,698 + MPMX19_04435 0.74 -0.2 800,698 + MPMX19_04435 0.74 -0.9 800,698 + MPMX19_04435 0.74 +2.0 800,698 + MPMX19_04435 0.74 -0.4 800,698 + MPMX19_04435 0.74 +1.3 800,698 + MPMX19_04435 0.74 +0.1 800,698 + MPMX19_04435 0.74 -0.2 800,698 + MPMX19_04435 0.74 -1.3
Or see this region's nucleotide sequence