Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04429

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04427 and MPMX19_04428 are separated by 197 nucleotidesMPMX19_04428 and MPMX19_04429 are separated by 257 nucleotidesMPMX19_04429 and MPMX19_04430 are separated by 222 nucleotidesMPMX19_04430 and MPMX19_04431 are separated by 12 nucleotides MPMX19_04427: MPMX19_04427 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 791,823 to 792,653 _04427 MPMX19_04428: MPMX19_04428 - hypothetical protein, at 792,851 to 793,018 _04428 MPMX19_04429: MPMX19_04429 - N-acetylmuramoyl-L-alanine amidase AmiA, at 793,276 to 794,118 _04429 MPMX19_04430: MPMX19_04430 - hypothetical protein, at 794,341 to 794,946 _04430 MPMX19_04431: MPMX19_04431 - hypothetical protein, at 794,959 to 796,437 _04431 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.324 kb on + strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.325 kb on - strand, within MPMX19_04427at 792.418 kb on - strand, within MPMX19_04427at 793.041 kb on + strandat 793.140 kb on + strandat 793.141 kb on - strandat 793.175 kb on - strandat 793.210 kb on + strandat 793.210 kb on + strandat 793.210 kb on + strandat 793.211 kb on - strandat 793.265 kb on + strandat 793.266 kb on - strandat 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.714 kb on + strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 793.715 kb on - strand, within MPMX19_04429at 794.778 kb on + strand, within MPMX19_04430at 794.779 kb on - strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.788 kb on + strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.789 kb on - strand, within MPMX19_04430at 794.818 kb on + strand, within MPMX19_04430at 794.818 kb on + strand, within MPMX19_04430at 794.819 kb on - strand, within MPMX19_04430at 794.908 kb on + strandat 794.908 kb on + strandat 794.908 kb on + strandat 794.908 kb on + strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 794.909 kb on - strandat 795.090 kb on + strandat 795.090 kb on + strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.091 kb on - strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.105 kb on + strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.106 kb on - strandat 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.107 kb on + strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431at 795.108 kb on - strand, within MPMX19_04431

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
792,324 + MPMX19_04427 0.60 +0.1
792,324 + MPMX19_04427 0.60 -0.6
792,324 + MPMX19_04427 0.60 -0.3
792,324 + MPMX19_04427 0.60 -1.2
792,324 + MPMX19_04427 0.60 -1.9
792,324 + MPMX19_04427 0.60 -0.6
792,324 + MPMX19_04427 0.60 -0.7
792,324 + MPMX19_04427 0.60 -1.9
792,324 + MPMX19_04427 0.60 -1.5
792,324 + MPMX19_04427 0.60 -0.7
792,324 + MPMX19_04427 0.60 -1.3
792,325 - MPMX19_04427 0.60 -1.3
792,325 - MPMX19_04427 0.60 +0.2
792,325 - MPMX19_04427 0.60 -0.5
792,325 - MPMX19_04427 0.60 -0.6
792,325 - MPMX19_04427 0.60 +0.3
792,325 - MPMX19_04427 0.60 -0.5
792,325 - MPMX19_04427 0.60 -0.4
792,325 - MPMX19_04427 0.60 +0.2
792,325 - MPMX19_04427 0.60 -0.4
792,325 - MPMX19_04427 0.60 -0.7
792,325 - MPMX19_04427 0.60 +0.5
792,325 - MPMX19_04427 0.60 +0.1
792,325 - MPMX19_04427 0.60 -0.6
792,418 - MPMX19_04427 0.72 -1.7
793,041 + -1.6
793,140 + -0.9
793,141 - -0.5
793,175 - -1.6
793,210 + +0.3
793,210 + -1.3
793,210 + -1.2
793,211 - +1.4
793,265 + +0.8
793,266 - -1.7
793,714 + MPMX19_04429 0.52 -0.4
793,714 + MPMX19_04429 0.52 -1.5
793,714 + MPMX19_04429 0.52 -2.7
793,714 + MPMX19_04429 0.52 -1.7
793,714 + MPMX19_04429 0.52 -0.0
793,714 + MPMX19_04429 0.52 -2.2
793,714 + MPMX19_04429 0.52 +0.8
793,714 + MPMX19_04429 0.52 +0.4
793,714 + MPMX19_04429 0.52 +0.4
793,714 + MPMX19_04429 0.52 -1.3
793,715 - MPMX19_04429 0.52 +0.3
793,715 - MPMX19_04429 0.52 -2.1
793,715 - MPMX19_04429 0.52 -0.7
793,715 - MPMX19_04429 0.52 -1.7
793,715 - MPMX19_04429 0.52 -0.2
793,715 - MPMX19_04429 0.52 -1.6
793,715 - MPMX19_04429 0.52 -1.9
793,715 - MPMX19_04429 0.52 -0.9
793,715 - MPMX19_04429 0.52 -1.2
794,778 + MPMX19_04430 0.72 +0.3
794,779 - MPMX19_04430 0.72 -1.1
794,788 + MPMX19_04430 0.74 -1.0
794,788 + MPMX19_04430 0.74 -0.2
794,788 + MPMX19_04430 0.74 +0.8
794,788 + MPMX19_04430 0.74 +0.3
794,789 - MPMX19_04430 0.74 +0.5
794,789 - MPMX19_04430 0.74 -0.2
794,789 - MPMX19_04430 0.74 -0.9
794,789 - MPMX19_04430 0.74 -1.1
794,789 - MPMX19_04430 0.74 -1.7
794,789 - MPMX19_04430 0.74 +0.2
794,789 - MPMX19_04430 0.74 -0.5
794,789 - MPMX19_04430 0.74 +1.4
794,818 + MPMX19_04430 0.79 +1.3
794,818 + MPMX19_04430 0.79 -1.5
794,819 - MPMX19_04430 0.79 +0.8
794,908 + -0.2
794,908 + +0.3
794,908 + -0.4
794,908 + +0.1
794,909 - +0.5
794,909 - -0.2
794,909 - -1.1
794,909 - -2.1
794,909 - -0.3
794,909 - -2.2
794,909 - -0.3
794,909 - -1.0
794,909 - +0.0
795,090 + -0.1
795,090 + +0.4
795,091 - -1.5
795,091 - -0.2
795,091 - +0.3
795,091 - +0.3
795,091 - +0.5
795,105 + +0.6
795,105 + -0.3
795,105 + +1.1
795,105 + -0.0
795,106 - -0.7
795,106 - -0.6
795,106 - -0.4
795,106 - +0.3
795,106 - +0.1
795,106 - +0.0
795,106 - -1.6
795,107 + MPMX19_04431 0.10 +1.5
795,107 + MPMX19_04431 0.10 -1.1
795,107 + MPMX19_04431 0.10 -0.1
795,107 + MPMX19_04431 0.10 -2.0
795,107 + MPMX19_04431 0.10 -1.0
795,107 + MPMX19_04431 0.10 -1.7
795,107 + MPMX19_04431 0.10 -0.9
795,107 + MPMX19_04431 0.10 -0.4
795,107 + MPMX19_04431 0.10 -0.2
795,107 + MPMX19_04431 0.10 -0.7
795,107 + MPMX19_04431 0.10 +0.1
795,107 + MPMX19_04431 0.10 -1.0
795,107 + MPMX19_04431 0.10 +0.4
795,107 + MPMX19_04431 0.10 +0.5
795,107 + MPMX19_04431 0.10 -0.9
795,107 + MPMX19_04431 0.10 -0.7
795,107 + MPMX19_04431 0.10 -2.0
795,107 + MPMX19_04431 0.10 -1.2
795,107 + MPMX19_04431 0.10 -1.6
795,107 + MPMX19_04431 0.10 -0.6
795,107 + MPMX19_04431 0.10 -0.5
795,107 + MPMX19_04431 0.10 -1.5
795,108 - MPMX19_04431 0.10 +0.4
795,108 - MPMX19_04431 0.10 -1.2
795,108 - MPMX19_04431 0.10 +0.8
795,108 - MPMX19_04431 0.10 +0.5
795,108 - MPMX19_04431 0.10 -0.4
795,108 - MPMX19_04431 0.10 -0.0
795,108 - MPMX19_04431 0.10 +0.3
795,108 - MPMX19_04431 0.10 +0.8
795,108 - MPMX19_04431 0.10 +0.3
795,108 - MPMX19_04431 0.10 -1.2
795,108 - MPMX19_04431 0.10 -2.2
795,108 - MPMX19_04431 0.10 +1.0
795,108 - MPMX19_04431 0.10 +1.6
795,108 - MPMX19_04431 0.10 -2.2
795,108 - MPMX19_04431 0.10 +0.2
795,108 - MPMX19_04431 0.10 -2.6
795,108 - MPMX19_04431 0.10 -0.4
795,108 - MPMX19_04431 0.10 -0.3
795,108 - MPMX19_04431 0.10 +1.6
795,108 - MPMX19_04431 0.10 -0.8
795,108 - MPMX19_04431 0.10 +0.1
795,108 - MPMX19_04431 0.10 -2.1
795,108 - MPMX19_04431 0.10 +1.0
795,108 - MPMX19_04431 0.10 +2.4
795,108 - MPMX19_04431 0.10 -1.2
795,108 - MPMX19_04431 0.10 -0.7

Or see this region's nucleotide sequence