Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04408

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04406 and MPMX19_04407 are separated by 117 nucleotidesMPMX19_04407 and MPMX19_04408 overlap by 4 nucleotidesMPMX19_04408 and MPMX19_04409 are separated by 60 nucleotidesMPMX19_04409 and MPMX19_04410 are separated by 13 nucleotides MPMX19_04406: MPMX19_04406 - Octaprenyl diphosphate synthase, at 770,711 to 771,727 _04406 MPMX19_04407: MPMX19_04407 - hypothetical protein, at 771,845 to 772,051 _04407 MPMX19_04408: MPMX19_04408 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 772,048 to 772,818 _04408 MPMX19_04409: MPMX19_04409 - hypothetical protein, at 772,879 to 773,769 _04409 MPMX19_04410: MPMX19_04410 - Oxalate:formate antiporter, at 773,783 to 775,078 _04410 Position (kb) 772 773Strain fitness (log2 ratio) -2 -1 0 1at 771.783 kb on - strandat 771.783 kb on - strandat 771.783 kb on - strandat 771.815 kb on - strandat 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.997 kb on + strand, within MPMX19_04407at 772.147 kb on + strand, within MPMX19_04408at 772.441 kb on + strand, within MPMX19_04408at 772.441 kb on + strand, within MPMX19_04408at 772.442 kb on - strand, within MPMX19_04408at 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.766 kb on - strandat 772.816 kb on + strandat 772.816 kb on + strandat 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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771,783 - -0.2
771,783 - -0.3
771,783 - +0.8
771,815 - -0.4
771,941 + MPMX19_04407 0.46 -1.0
771,941 + MPMX19_04407 0.46 -2.4
771,941 + MPMX19_04407 0.46 +0.4
771,941 + MPMX19_04407 0.46 -0.6
771,941 + MPMX19_04407 0.46 +0.3
771,941 + MPMX19_04407 0.46 -0.1
771,941 + MPMX19_04407 0.46 +0.7
771,941 + MPMX19_04407 0.46 -0.1
771,941 + MPMX19_04407 0.46 -1.3
771,941 + MPMX19_04407 0.46 +0.4
771,941 + MPMX19_04407 0.46 -0.4
771,941 + MPMX19_04407 0.46 -1.6
771,941 + MPMX19_04407 0.46 -0.3
771,941 + MPMX19_04407 0.46 +0.8
771,941 + MPMX19_04407 0.46 -0.4
771,941 + MPMX19_04407 0.46 -0.6
771,941 + MPMX19_04407 0.46 -0.5
771,941 + MPMX19_04407 0.46 -1.3
771,941 + MPMX19_04407 0.46 -1.6
771,941 + MPMX19_04407 0.46 -1.0
771,941 + MPMX19_04407 0.46 -0.9
771,941 + MPMX19_04407 0.46 -0.6
771,941 + MPMX19_04407 0.46 -2.2
771,941 + MPMX19_04407 0.46 -0.2
771,941 + MPMX19_04407 0.46 -0.9
771,941 + MPMX19_04407 0.46 -0.5
771,941 + MPMX19_04407 0.46 -1.1
771,942 - MPMX19_04407 0.47 -0.3
771,942 - MPMX19_04407 0.47 +0.7
771,942 - MPMX19_04407 0.47 -1.6
771,942 - MPMX19_04407 0.47 -0.1
771,942 - MPMX19_04407 0.47 -0.1
771,942 - MPMX19_04407 0.47 -0.3
771,942 - MPMX19_04407 0.47 -0.7
771,942 - MPMX19_04407 0.47 +0.8
771,942 - MPMX19_04407 0.47 +0.0
771,942 - MPMX19_04407 0.47 -1.3
771,942 - MPMX19_04407 0.47 +0.4
771,942 - MPMX19_04407 0.47 -1.7
771,942 - MPMX19_04407 0.47 -1.7
771,942 - MPMX19_04407 0.47 -0.4
771,942 - MPMX19_04407 0.47 -0.7
771,942 - MPMX19_04407 0.47 -0.7
771,942 - MPMX19_04407 0.47 -1.0
771,942 - MPMX19_04407 0.47 -1.4
771,942 - MPMX19_04407 0.47 -0.7
771,942 - MPMX19_04407 0.47 -1.8
771,942 - MPMX19_04407 0.47 +0.4
771,942 - MPMX19_04407 0.47 -0.2
771,942 - MPMX19_04407 0.47 -2.0
771,942 - MPMX19_04407 0.47 -0.6
771,942 - MPMX19_04407 0.47 -0.4
771,997 + MPMX19_04407 0.73 -0.0
772,147 + MPMX19_04408 0.13 -0.7
772,441 + MPMX19_04408 0.51 -1.6
772,441 + MPMX19_04408 0.51 -1.6
772,442 - MPMX19_04408 0.51 -1.2
772,765 + -1.0
772,765 + -0.7
772,765 + -1.0
772,765 + +0.7
772,765 + -1.3
772,766 - +0.1
772,816 + -0.6
772,816 + -1.2
773,326 + MPMX19_04409 0.50 +0.0
773,326 + MPMX19_04409 0.50 -0.1
773,326 + MPMX19_04409 0.50 -2.3
773,326 + MPMX19_04409 0.50 -0.7
773,326 + MPMX19_04409 0.50 +0.3
773,327 - MPMX19_04409 0.50 -1.2
773,327 - MPMX19_04409 0.50 +0.1
773,327 - MPMX19_04409 0.50 -2.4
773,327 - MPMX19_04409 0.50 +0.3

Or see this region's nucleotide sequence