Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04402 and MPMX19_04403 are separated by 172 nucleotides MPMX19_04403 and MPMX19_04404 are separated by 73 nucleotides MPMX19_04404 and MPMX19_04405 are separated by 221 nucleotides MPMX19_04405 and MPMX19_04406 are separated by 146 nucleotides
MPMX19_04402: MPMX19_04402 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 768,841 to 769,539
_04402
MPMX19_04403: MPMX19_04403 - hypothetical protein, at 769,712 to 770,116
_04403
MPMX19_04404: MPMX19_04404 - tRNA-Pro, at 770,190 to 770,266
_04404
MPMX19_04405: MPMX19_04405 - tRNA-Pro, at 770,488 to 770,564
_04405
MPMX19_04406: MPMX19_04406 - Octaprenyl diphosphate synthase, at 770,711 to 771,727
_04406
Position (kb) 769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.732 kb on + strand at 768.733 kb on - strand at 768.733 kb on - strand at 768.850 kb on + strand at 768.850 kb on + strand at 768.851 kb on - strand at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.471 kb on + strand at 769.471 kb on + strand at 769.471 kb on + strand at 769.472 kb on - strand at 769.588 kb on - strand at 769.602 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.728 kb on + strand at 769.728 kb on + strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.730 kb on + strand at 769.730 kb on + strand at 769.731 kb on - strand at 769.731 kb on - strand at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.983 kb on - strand, within MPMX19_04403 at 770.012 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.130 kb on - strand at 770.189 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.324 kb on + strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.396 kb on + strand at 770.487 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.622 kb on + strand at 770.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 768,722 + +0.4 768,722 + -2.3 768,722 + -0.7 768,722 + -0.1 768,722 + +0.1 768,722 + -0.4 768,722 + +0.3 768,722 + +0.3 768,723 - -0.3 768,723 - +0.2 768,723 - +0.9 768,723 - -0.5 768,732 + -0.2 768,733 - -0.0 768,733 - -0.5 768,850 + +0.8 768,850 + -1.3 768,851 - +1.8 768,946 + MPMX19_04402 0.15 +0.5 768,946 + MPMX19_04402 0.15 -1.3 768,946 + MPMX19_04402 0.15 -0.5 768,946 + MPMX19_04402 0.15 +1.0 768,947 - MPMX19_04402 0.15 -1.4 768,947 - MPMX19_04402 0.15 +0.8 768,947 - MPMX19_04402 0.15 +0.0 768,947 - MPMX19_04402 0.15 +0.3 768,947 - MPMX19_04402 0.15 -0.0 768,967 + MPMX19_04402 0.18 -1.7 768,967 + MPMX19_04402 0.18 -0.0 768,967 + MPMX19_04402 0.18 -0.6 768,967 + MPMX19_04402 0.18 -0.6 768,967 + MPMX19_04402 0.18 -1.9 768,968 - MPMX19_04402 0.18 -1.9 768,968 - MPMX19_04402 0.18 -1.3 769,120 + MPMX19_04402 0.40 -0.5 769,120 + MPMX19_04402 0.40 -1.7 769,120 + MPMX19_04402 0.40 -0.3 769,120 + MPMX19_04402 0.40 -1.7 769,120 + MPMX19_04402 0.40 +1.5 769,120 + MPMX19_04402 0.40 -0.2 769,120 + MPMX19_04402 0.40 -2.4 769,120 + MPMX19_04402 0.40 +0.7 769,120 + MPMX19_04402 0.40 -0.5 769,120 + MPMX19_04402 0.40 +1.1 769,120 + MPMX19_04402 0.40 -1.4 769,120 + MPMX19_04402 0.40 -1.3 769,121 - MPMX19_04402 0.40 -0.3 769,121 - MPMX19_04402 0.40 -1.4 769,121 - MPMX19_04402 0.40 -1.2 769,121 - MPMX19_04402 0.40 +1.8 769,121 - MPMX19_04402 0.40 -0.2 769,121 - MPMX19_04402 0.40 -1.2 769,121 - MPMX19_04402 0.40 +1.1 769,121 - MPMX19_04402 0.40 -1.7 769,147 + MPMX19_04402 0.44 -1.2 769,147 + MPMX19_04402 0.44 -2.4 769,147 + MPMX19_04402 0.44 -2.2 769,147 + MPMX19_04402 0.44 -0.5 769,147 + MPMX19_04402 0.44 +0.3 769,147 + MPMX19_04402 0.44 -0.3 769,147 + MPMX19_04402 0.44 +0.5 769,148 - MPMX19_04402 0.44 -0.2 769,148 - MPMX19_04402 0.44 +0.5 769,148 - MPMX19_04402 0.44 +2.1 769,148 - MPMX19_04402 0.44 +0.4 769,148 - MPMX19_04402 0.44 -0.1 769,148 - MPMX19_04402 0.44 +0.3 769,148 - MPMX19_04402 0.44 +0.7 769,148 - MPMX19_04402 0.44 -0.2 769,148 - MPMX19_04402 0.44 -0.2 769,148 - MPMX19_04402 0.44 -1.3 769,283 - MPMX19_04402 0.63 -0.4 769,283 - MPMX19_04402 0.63 -0.2 769,471 + -0.2 769,471 + +0.0 769,471 + -1.3 769,472 - -1.1 769,588 - +0.7 769,602 + -1.7 769,639 + +0.8 769,639 + -1.1 769,639 + -0.1 769,639 + +0.3 769,639 + -0.2 769,639 + +0.4 769,640 - -1.3 769,640 - -0.5 769,640 - -0.3 769,640 - +0.4 769,681 + -2.7 769,681 + -0.4 769,681 + -0.5 769,682 - -0.3 769,682 - +0.8 769,682 - -1.0 769,728 + -1.2 769,728 + -0.2 769,729 - -0.4 769,729 - +1.5 769,729 - -0.6 769,729 - -1.1 769,729 - +2.6 769,730 + -1.0 769,730 + +0.1 769,731 - +0.7 769,731 - -0.7 769,919 + MPMX19_04403 0.51 -1.0 769,919 + MPMX19_04403 0.51 +0.8 769,919 + MPMX19_04403 0.51 -0.2 769,919 + MPMX19_04403 0.51 +0.1 769,919 + MPMX19_04403 0.51 +1.3 769,919 + MPMX19_04403 0.51 +0.7 769,919 + MPMX19_04403 0.51 -1.3 769,919 + MPMX19_04403 0.51 +0.2 769,919 + MPMX19_04403 0.51 -2.9 769,920 - MPMX19_04403 0.51 +0.4 769,920 - MPMX19_04403 0.51 +0.7 769,924 + MPMX19_04403 0.52 -1.0 769,924 + MPMX19_04403 0.52 +0.2 769,925 - MPMX19_04403 0.53 +0.0 769,925 - MPMX19_04403 0.53 +0.4 769,983 - MPMX19_04403 0.67 -1.1 770,012 + MPMX19_04403 0.74 -1.9 770,036 + MPMX19_04403 0.80 -0.9 770,036 + MPMX19_04403 0.80 -1.1 770,036 + MPMX19_04403 0.80 -1.5 770,037 - MPMX19_04403 0.80 +0.2 770,037 - MPMX19_04403 0.80 +0.7 770,037 - MPMX19_04403 0.80 +0.8 770,037 - MPMX19_04403 0.80 +0.4 770,130 - +1.0 770,189 - -0.9 770,295 - +1.3 770,295 - -0.7 770,295 - +0.3 770,295 - -0.5 770,295 - -0.2 770,295 - -0.3 770,324 + +1.8 770,325 - -0.2 770,325 - -1.2 770,325 - -0.2 770,325 - +0.7 770,325 - -0.7 770,325 - -2.1 770,325 - -2.1 770,325 - +0.0 770,327 - -0.0 770,327 - -1.3 770,327 - -0.7 770,327 - -0.5 770,327 - -0.0 770,396 + +0.0 770,487 - -0.2 770,593 - -0.6 770,593 - +0.3 770,593 - -2.2 770,593 - -0.1 770,593 - -0.7 770,622 + +0.5 770,625 - -0.6
Or see this region's nucleotide sequence