Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04354

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04353 and MPMX19_04354 are separated by 126 nucleotidesMPMX19_04354 and MPMX19_04355 overlap by 4 nucleotides MPMX19_04353: MPMX19_04353 - hypothetical protein, at 717,739 to 719,127 _04353 MPMX19_04354: MPMX19_04354 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 719,254 to 719,955 _04354 MPMX19_04355: MPMX19_04355 - Vitamin B12 import ATP-binding protein BtuD, at 719,952 to 721,667 _04355 Position (kb) 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 718.808 kb on + strand, within MPMX19_04353at 718.808 kb on + strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 718.809 kb on - strand, within MPMX19_04353at 719.012 kb on + strandat 719.012 kb on + strandat 719.012 kb on + strandat 719.012 kb on + strandat 719.013 kb on - strandat 719.013 kb on - strandat 719.013 kb on - strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.015 kb on + strandat 719.016 kb on - strandat 719.016 kb on - strandat 719.135 kb on + strandat 719.135 kb on + strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.136 kb on - strandat 719.164 kb on + strandat 719.164 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.243 kb on + strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.244 kb on - strandat 719.256 kb on - strandat 719.256 kb on - strandat 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.711 kb on + strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.712 kb on - strand, within MPMX19_04354at 719.915 kb on + strandat 719.915 kb on + strandat 719.915 kb on + strandat 719.916 kb on - strandat 719.916 kb on - strandat 719.977 kb on + strandat 719.978 kb on - strandat 719.978 kb on - strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.028 kb on + strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.029 kb on - strandat 720.786 kb on + strand, within MPMX19_04355at 720.786 kb on + strand, within MPMX19_04355at 720.786 kb on + strand, within MPMX19_04355at 720.786 kb on + strand, within MPMX19_04355at 720.786 kb on + strand, within MPMX19_04355at 720.787 kb on - strand, within MPMX19_04355at 720.787 kb on - strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.814 kb on + strand, within MPMX19_04355at 720.815 kb on - strand, within MPMX19_04355at 720.815 kb on - strand, within MPMX19_04355at 720.815 kb on - strand, within MPMX19_04355at 720.815 kb on - strand, within MPMX19_04355at 720.815 kb on - strand, within MPMX19_04355at 720.826 kb on + strand, within MPMX19_04355

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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718,808 + MPMX19_04353 0.77 -1.3
718,808 + MPMX19_04353 0.77 -1.3
718,809 - MPMX19_04353 0.77 -0.9
718,809 - MPMX19_04353 0.77 -1.0
718,809 - MPMX19_04353 0.77 -1.4
718,809 - MPMX19_04353 0.77 +0.7
719,012 + -0.2
719,012 + +0.0
719,012 + -1.7
719,012 + -1.3
719,013 - +0.3
719,013 - -0.7
719,013 - +1.0
719,015 + -0.7
719,015 + +0.0
719,015 + -0.2
719,015 + -1.6
719,015 + +0.1
719,015 + +0.8
719,016 - +0.3
719,016 - -0.5
719,135 + +0.8
719,135 + -1.2
719,136 - -0.2
719,136 - -1.6
719,136 - -0.7
719,136 - -0.5
719,164 + -0.2
719,164 + +0.5
719,243 + -2.0
719,243 + +0.0
719,243 + -1.8
719,243 + +0.3
719,243 + -1.6
719,243 + +0.2
719,243 + -2.7
719,244 - +2.4
719,244 - -2.2
719,244 - -1.9
719,244 - +0.3
719,244 - -1.1
719,244 - -0.2
719,244 - -0.7
719,244 - -0.2
719,244 - -0.1
719,244 - -0.7
719,244 - -2.1
719,244 - +1.2
719,256 - -0.2
719,256 - +0.2
719,711 + MPMX19_04354 0.65 -1.2
719,711 + MPMX19_04354 0.65 -1.3
719,711 + MPMX19_04354 0.65 +0.3
719,711 + MPMX19_04354 0.65 -1.0
719,711 + MPMX19_04354 0.65 -0.3
719,711 + MPMX19_04354 0.65 -1.2
719,712 - MPMX19_04354 0.65 +0.8
719,712 - MPMX19_04354 0.65 -1.3
719,712 - MPMX19_04354 0.65 -2.2
719,712 - MPMX19_04354 0.65 +0.3
719,915 + -1.0
719,915 + +0.0
719,915 + -0.7
719,916 - -0.3
719,916 - -0.2
719,977 + -0.0
719,978 - -0.4
719,978 - +1.1
720,028 + -1.2
720,028 + +0.6
720,028 + +0.4
720,028 + -0.9
720,028 + -0.0
720,028 + -1.9
720,028 + +0.4
720,028 + +0.6
720,028 + +0.4
720,028 + +0.5
720,028 + -0.3
720,028 + -0.9
720,028 + -0.9
720,028 + +0.2
720,028 + -2.2
720,028 + +0.6
720,028 + -0.8
720,028 + -0.7
720,028 + -1.2
720,029 - -0.5
720,029 - -0.7
720,029 - -0.5
720,029 - +0.6
720,029 - -1.7
720,029 - +0.1
720,029 - -1.3
720,029 - +0.3
720,029 - -0.5
720,029 - +0.4
720,029 - -1.6
720,786 + MPMX19_04355 0.49 -1.0
720,786 + MPMX19_04355 0.49 +1.5
720,786 + MPMX19_04355 0.49 -1.2
720,786 + MPMX19_04355 0.49 -1.1
720,786 + MPMX19_04355 0.49 -0.5
720,787 - MPMX19_04355 0.49 -0.3
720,787 - MPMX19_04355 0.49 -2.0
720,814 + MPMX19_04355 0.50 +0.3
720,814 + MPMX19_04355 0.50 -1.6
720,814 + MPMX19_04355 0.50 -0.5
720,814 + MPMX19_04355 0.50 -1.3
720,814 + MPMX19_04355 0.50 +0.3
720,814 + MPMX19_04355 0.50 +0.4
720,814 + MPMX19_04355 0.50 -1.3
720,814 + MPMX19_04355 0.50 -1.7
720,814 + MPMX19_04355 0.50 +1.0
720,815 - MPMX19_04355 0.50 +0.1
720,815 - MPMX19_04355 0.50 -0.8
720,815 - MPMX19_04355 0.50 -1.1
720,815 - MPMX19_04355 0.50 -0.3
720,815 - MPMX19_04355 0.50 -0.2
720,826 + MPMX19_04355 0.51 -0.6

Or see this region's nucleotide sequence