Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04266 and MPMX19_04267 are separated by 195 nucleotides MPMX19_04267 and MPMX19_04268 are separated by 54 nucleotides MPMX19_04268 and MPMX19_04269 are separated by 340 nucleotides MPMX19_04269 and MPMX19_04270 overlap by 4 nucleotides
MPMX19_04266: MPMX19_04266 - hypothetical protein, at 625,977 to 626,387
_04266
MPMX19_04267: MPMX19_04267 - hypothetical protein, at 626,583 to 627,113
_04267
MPMX19_04268: MPMX19_04268 - 2-keto-3-deoxygluconate permease, at 627,168 to 628,184
_04268
MPMX19_04269: MPMX19_04269 - hypothetical protein, at 628,525 to 628,893
_04269
MPMX19_04270: MPMX19_04270 - hypothetical protein, at 628,890 to 630,413
_04270
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.727 kb on + strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 626.728 kb on - strand, within MPMX19_04267 at 627.111 kb on + strand at 627.112 kb on - strand at 627.112 kb on - strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.154 kb on + strand at 627.155 kb on - strand at 627.155 kb on - strand at 627.169 kb on + strand at 627.170 kb on - strand at 627.170 kb on - strand at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.787 kb on + strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.788 kb on - strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.808 kb on + strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 627.809 kb on - strand, within MPMX19_04268 at 628.157 kb on + strand at 628.158 kb on - strand at 628.300 kb on + strand at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.073 kb on + strand, within MPMX19_04270 at 629.074 kb on - strand, within MPMX19_04270
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 626,727 + MPMX19_04267 0.27 -0.8 626,727 + MPMX19_04267 0.27 +0.1 626,727 + MPMX19_04267 0.27 +0.6 626,727 + MPMX19_04267 0.27 -0.7 626,727 + MPMX19_04267 0.27 +1.1 626,727 + MPMX19_04267 0.27 -0.7 626,727 + MPMX19_04267 0.27 +0.4 626,728 - MPMX19_04267 0.27 +1.5 626,728 - MPMX19_04267 0.27 -0.5 626,728 - MPMX19_04267 0.27 -0.8 627,111 + +0.4 627,112 - -2.2 627,112 - -0.5 627,154 + -0.2 627,154 + -0.1 627,154 + -1.7 627,154 + +0.8 627,154 + -0.3 627,155 - +0.7 627,155 - +0.4 627,169 + -0.6 627,170 - -1.7 627,170 - +1.3 627,787 + MPMX19_04268 0.61 +0.2 627,787 + MPMX19_04268 0.61 +0.4 627,787 + MPMX19_04268 0.61 -1.1 627,787 + MPMX19_04268 0.61 -1.2 627,788 - MPMX19_04268 0.61 -0.1 627,788 - MPMX19_04268 0.61 -0.7 627,788 - MPMX19_04268 0.61 +2.6 627,808 + MPMX19_04268 0.63 -1.4 627,808 + MPMX19_04268 0.63 +0.7 627,808 + MPMX19_04268 0.63 +0.8 627,808 + MPMX19_04268 0.63 -0.2 627,808 + MPMX19_04268 0.63 -2.6 627,808 + MPMX19_04268 0.63 -0.6 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.1 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 -0.2 627,808 + MPMX19_04268 0.63 -1.1 627,808 + MPMX19_04268 0.63 -1.2 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.2 627,808 + MPMX19_04268 0.63 -0.9 627,808 + MPMX19_04268 0.63 -1.5 627,808 + MPMX19_04268 0.63 +1.0 627,808 + MPMX19_04268 0.63 -1.5 627,808 + MPMX19_04268 0.63 -1.9 627,808 + MPMX19_04268 0.63 -1.4 627,808 + MPMX19_04268 0.63 +1.1 627,808 + MPMX19_04268 0.63 -0.4 627,808 + MPMX19_04268 0.63 +1.8 627,808 + MPMX19_04268 0.63 -0.6 627,808 + MPMX19_04268 0.63 +0.0 627,808 + MPMX19_04268 0.63 -0.4 627,808 + MPMX19_04268 0.63 -0.1 627,808 + MPMX19_04268 0.63 +0.3 627,808 + MPMX19_04268 0.63 +1.2 627,808 + MPMX19_04268 0.63 -3.1 627,808 + MPMX19_04268 0.63 -0.2 627,808 + MPMX19_04268 0.63 -0.3 627,808 + MPMX19_04268 0.63 +0.7 627,808 + MPMX19_04268 0.63 -1.7 627,808 + MPMX19_04268 0.63 -0.8 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.1 627,808 + MPMX19_04268 0.63 +0.8 627,808 + MPMX19_04268 0.63 -0.5 627,808 + MPMX19_04268 0.63 +0.4 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 -0.5 627,809 - MPMX19_04268 0.63 -1.6 627,809 - MPMX19_04268 0.63 -1.9 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 -0.9 627,809 - MPMX19_04268 0.63 -1.5 627,809 - MPMX19_04268 0.63 -0.9 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 -0.2 627,809 - MPMX19_04268 0.63 -1.5 627,809 - MPMX19_04268 0.63 +0.2 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 +0.5 627,809 - MPMX19_04268 0.63 +0.9 627,809 - MPMX19_04268 0.63 +0.2 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 -0.8 627,809 - MPMX19_04268 0.63 -0.9 627,809 - MPMX19_04268 0.63 -1.4 627,809 - MPMX19_04268 0.63 -1.2 627,809 - MPMX19_04268 0.63 +0.8 627,809 - MPMX19_04268 0.63 -0.4 627,809 - MPMX19_04268 0.63 +0.2 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -1.3 627,809 - MPMX19_04268 0.63 -1.4 627,809 - MPMX19_04268 0.63 -1.8 627,809 - MPMX19_04268 0.63 -1.0 627,809 - MPMX19_04268 0.63 -0.8 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 -1.7 627,809 - MPMX19_04268 0.63 +1.2 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -0.7 627,809 - MPMX19_04268 0.63 -1.9 627,809 - MPMX19_04268 0.63 -1.4 627,809 - MPMX19_04268 0.63 -0.1 627,809 - MPMX19_04268 0.63 -0.3 628,157 + +1.1 628,158 - -0.3 628,300 + +0.3 629,073 + MPMX19_04270 0.12 +0.2 629,073 + MPMX19_04270 0.12 -0.1 629,073 + MPMX19_04270 0.12 -0.7 629,073 + MPMX19_04270 0.12 -0.3 629,073 + MPMX19_04270 0.12 -0.8 629,074 - MPMX19_04270 0.12 -0.7
Or see this region's nucleotide sequence