Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04267

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04265 and MPMX19_04266 are separated by 145 nucleotidesMPMX19_04266 and MPMX19_04267 are separated by 195 nucleotidesMPMX19_04267 and MPMX19_04268 are separated by 54 nucleotides MPMX19_04265: MPMX19_04265 - Aliphatic sulfonates import ATP-binding protein SsuB, at 625,154 to 625,831 _04265 MPMX19_04266: MPMX19_04266 - hypothetical protein, at 625,977 to 626,387 _04266 MPMX19_04267: MPMX19_04267 - hypothetical protein, at 626,583 to 627,113 _04267 MPMX19_04268: MPMX19_04268 - 2-keto-3-deoxygluconate permease, at 627,168 to 628,184 _04268 Position (kb) 626 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.727 kb on + strand, within MPMX19_04267at 626.728 kb on - strand, within MPMX19_04267at 626.728 kb on - strand, within MPMX19_04267at 626.728 kb on - strand, within MPMX19_04267at 627.111 kb on + strandat 627.112 kb on - strandat 627.112 kb on - strandat 627.154 kb on + strandat 627.154 kb on + strandat 627.154 kb on + strandat 627.154 kb on + strandat 627.154 kb on + strandat 627.155 kb on - strandat 627.155 kb on - strandat 627.169 kb on + strandat 627.170 kb on - strandat 627.170 kb on - strandat 627.787 kb on + strand, within MPMX19_04268at 627.787 kb on + strand, within MPMX19_04268at 627.787 kb on + strand, within MPMX19_04268at 627.787 kb on + strand, within MPMX19_04268at 627.788 kb on - strand, within MPMX19_04268at 627.788 kb on - strand, within MPMX19_04268at 627.788 kb on - strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.808 kb on + strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268at 627.809 kb on - strand, within MPMX19_04268

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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626,727 + MPMX19_04267 0.27 -0.8
626,727 + MPMX19_04267 0.27 +0.1
626,727 + MPMX19_04267 0.27 +0.6
626,727 + MPMX19_04267 0.27 -0.7
626,727 + MPMX19_04267 0.27 +1.1
626,727 + MPMX19_04267 0.27 -0.7
626,727 + MPMX19_04267 0.27 +0.4
626,728 - MPMX19_04267 0.27 +1.5
626,728 - MPMX19_04267 0.27 -0.5
626,728 - MPMX19_04267 0.27 -0.8
627,111 + +0.4
627,112 - -2.2
627,112 - -0.5
627,154 + -0.2
627,154 + -0.1
627,154 + -1.7
627,154 + +0.8
627,154 + -0.3
627,155 - +0.7
627,155 - +0.4
627,169 + -0.6
627,170 - -1.7
627,170 - +1.3
627,787 + MPMX19_04268 0.61 +0.2
627,787 + MPMX19_04268 0.61 +0.4
627,787 + MPMX19_04268 0.61 -1.1
627,787 + MPMX19_04268 0.61 -1.2
627,788 - MPMX19_04268 0.61 -0.1
627,788 - MPMX19_04268 0.61 -0.7
627,788 - MPMX19_04268 0.61 +2.6
627,808 + MPMX19_04268 0.63 -1.4
627,808 + MPMX19_04268 0.63 +0.7
627,808 + MPMX19_04268 0.63 +0.8
627,808 + MPMX19_04268 0.63 -0.2
627,808 + MPMX19_04268 0.63 -2.6
627,808 + MPMX19_04268 0.63 -0.6
627,808 + MPMX19_04268 0.63 -0.5
627,808 + MPMX19_04268 0.63 +0.1
627,808 + MPMX19_04268 0.63 -0.5
627,808 + MPMX19_04268 0.63 -0.2
627,808 + MPMX19_04268 0.63 -1.1
627,808 + MPMX19_04268 0.63 -1.2
627,808 + MPMX19_04268 0.63 -0.5
627,808 + MPMX19_04268 0.63 +0.2
627,808 + MPMX19_04268 0.63 -0.9
627,808 + MPMX19_04268 0.63 -1.5
627,808 + MPMX19_04268 0.63 +1.0
627,808 + MPMX19_04268 0.63 -1.5
627,808 + MPMX19_04268 0.63 -1.9
627,808 + MPMX19_04268 0.63 -1.4
627,808 + MPMX19_04268 0.63 +1.1
627,808 + MPMX19_04268 0.63 -0.4
627,808 + MPMX19_04268 0.63 +1.8
627,808 + MPMX19_04268 0.63 -0.6
627,808 + MPMX19_04268 0.63 +0.0
627,808 + MPMX19_04268 0.63 -0.4
627,808 + MPMX19_04268 0.63 -0.1
627,808 + MPMX19_04268 0.63 +0.3
627,808 + MPMX19_04268 0.63 +1.2
627,808 + MPMX19_04268 0.63 -3.1
627,808 + MPMX19_04268 0.63 -0.2
627,808 + MPMX19_04268 0.63 -0.3
627,808 + MPMX19_04268 0.63 +0.7
627,808 + MPMX19_04268 0.63 -1.7
627,808 + MPMX19_04268 0.63 -0.8
627,808 + MPMX19_04268 0.63 -0.5
627,808 + MPMX19_04268 0.63 +0.1
627,808 + MPMX19_04268 0.63 +0.8
627,808 + MPMX19_04268 0.63 -0.5
627,808 + MPMX19_04268 0.63 +0.4
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 -0.5
627,809 - MPMX19_04268 0.63 -1.6
627,809 - MPMX19_04268 0.63 -1.9
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 -0.9
627,809 - MPMX19_04268 0.63 -1.5
627,809 - MPMX19_04268 0.63 -0.9
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 -0.2
627,809 - MPMX19_04268 0.63 -1.5
627,809 - MPMX19_04268 0.63 +0.2
627,809 - MPMX19_04268 0.63 -0.1
627,809 - MPMX19_04268 0.63 +0.5
627,809 - MPMX19_04268 0.63 +0.9
627,809 - MPMX19_04268 0.63 +0.2
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 -0.8
627,809 - MPMX19_04268 0.63 -0.9
627,809 - MPMX19_04268 0.63 -1.4
627,809 - MPMX19_04268 0.63 -1.2
627,809 - MPMX19_04268 0.63 +0.8
627,809 - MPMX19_04268 0.63 -0.4
627,809 - MPMX19_04268 0.63 +0.2
627,809 - MPMX19_04268 0.63 -0.7
627,809 - MPMX19_04268 0.63 -1.3
627,809 - MPMX19_04268 0.63 -1.4
627,809 - MPMX19_04268 0.63 -1.8
627,809 - MPMX19_04268 0.63 -1.0
627,809 - MPMX19_04268 0.63 -0.8
627,809 - MPMX19_04268 0.63 -0.1
627,809 - MPMX19_04268 0.63 -1.7
627,809 - MPMX19_04268 0.63 +1.2
627,809 - MPMX19_04268 0.63 -0.7
627,809 - MPMX19_04268 0.63 -0.7
627,809 - MPMX19_04268 0.63 -1.9
627,809 - MPMX19_04268 0.63 -1.4
627,809 - MPMX19_04268 0.63 -0.1
627,809 - MPMX19_04268 0.63 -0.3

Or see this region's nucleotide sequence