Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04218

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04215 and MPMX19_04216 are separated by 45 nucleotidesMPMX19_04216 and MPMX19_04217 are separated by 51 nucleotidesMPMX19_04217 and MPMX19_04218 are separated by 225 nucleotidesMPMX19_04218 and MPMX19_04219 are separated by 48 nucleotides MPMX19_04215: MPMX19_04215 - hypothetical protein, at 556,181 to 556,756 _04215 MPMX19_04216: MPMX19_04216 - hypothetical protein, at 556,802 to 557,014 _04216 MPMX19_04217: MPMX19_04217 - Flagellar basal-body rod protein FlgC, at 557,066 to 557,497 _04217 MPMX19_04218: MPMX19_04218 - Protein phosphatase PrpC, at 557,723 to 558,538 _04218 MPMX19_04219: MPMX19_04219 - hypothetical protein, at 558,587 to 560,203 _04219 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 557.136 kb on + strand, within MPMX19_04217at 557.136 kb on + strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.137 kb on - strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.164 kb on + strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.165 kb on - strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.238 kb on + strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.239 kb on - strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.250 kb on + strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.251 kb on - strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.325 kb on + strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.326 kb on - strand, within MPMX19_04217at 557.458 kb on + strandat 557.458 kb on + strandat 557.459 kb on - strandat 557.497 kb on + strandat 557.497 kb on + strandat 557.498 kb on - strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.510 kb on + strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.511 kb on - strandat 557.553 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.579 kb on + strandat 557.580 kb on - strandat 557.580 kb on - strandat 557.580 kb on - strandat 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218at 558.678 kb on + strandat 558.678 kb on + strandat 558.678 kb on + strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.762 kb on + strand, within MPMX19_04219at 558.763 kb on - strand, within MPMX19_04219at 558.763 kb on - strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 559.241 kb on + strand, within MPMX19_04219at 559.242 kb on - strand, within MPMX19_04219at 559.242 kb on - strand, within MPMX19_04219at 559.498 kb on + strand, within MPMX19_04219

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
557,136 + MPMX19_04217 0.16 -0.4
557,136 + MPMX19_04217 0.16 -2.0
557,137 - MPMX19_04217 0.16 -0.5
557,137 - MPMX19_04217 0.16 +0.4
557,137 - MPMX19_04217 0.16 -1.0
557,164 + MPMX19_04217 0.23 -0.2
557,164 + MPMX19_04217 0.23 -1.1
557,164 + MPMX19_04217 0.23 -2.2
557,165 - MPMX19_04217 0.23 -0.3
557,165 - MPMX19_04217 0.23 -0.5
557,165 - MPMX19_04217 0.23 -0.2
557,165 - MPMX19_04217 0.23 -0.5
557,165 - MPMX19_04217 0.23 +1.2
557,165 - MPMX19_04217 0.23 -1.7
557,165 - MPMX19_04217 0.23 -0.1
557,238 + MPMX19_04217 0.40 +1.8
557,238 + MPMX19_04217 0.40 -1.0
557,238 + MPMX19_04217 0.40 +0.8
557,238 + MPMX19_04217 0.40 +0.1
557,238 + MPMX19_04217 0.40 -1.2
557,238 + MPMX19_04217 0.40 -0.7
557,238 + MPMX19_04217 0.40 -1.1
557,238 + MPMX19_04217 0.40 -0.6
557,238 + MPMX19_04217 0.40 -1.5
557,238 + MPMX19_04217 0.40 -0.4
557,238 + MPMX19_04217 0.40 -1.0
557,238 + MPMX19_04217 0.40 -1.1
557,238 + MPMX19_04217 0.40 +0.2
557,239 - MPMX19_04217 0.40 -1.2
557,239 - MPMX19_04217 0.40 +1.2
557,239 - MPMX19_04217 0.40 +0.3
557,239 - MPMX19_04217 0.40 -0.5
557,250 + MPMX19_04217 0.43 -0.5
557,250 + MPMX19_04217 0.43 -0.3
557,250 + MPMX19_04217 0.43 -0.1
557,250 + MPMX19_04217 0.43 +0.2
557,250 + MPMX19_04217 0.43 -0.3
557,250 + MPMX19_04217 0.43 +0.7
557,251 - MPMX19_04217 0.43 -0.0
557,251 - MPMX19_04217 0.43 -0.4
557,251 - MPMX19_04217 0.43 -1.4
557,251 - MPMX19_04217 0.43 +1.4
557,325 + MPMX19_04217 0.60 -0.8
557,325 + MPMX19_04217 0.60 +0.2
557,325 + MPMX19_04217 0.60 +0.8
557,325 + MPMX19_04217 0.60 -0.5
557,325 + MPMX19_04217 0.60 +1.1
557,326 - MPMX19_04217 0.60 -0.8
557,326 - MPMX19_04217 0.60 -0.8
557,326 - MPMX19_04217 0.60 +0.5
557,326 - MPMX19_04217 0.60 -2.1
557,458 + +1.5
557,458 + -0.5
557,459 - -1.7
557,497 + +0.6
557,497 + -0.2
557,498 - -0.8
557,510 + -0.6
557,510 + -0.8
557,510 + +0.3
557,510 + +1.8
557,510 + -1.0
557,510 + +1.5
557,510 + -0.8
557,510 + -0.8
557,511 - -0.4
557,511 - -1.0
557,511 - -0.0
557,511 - -1.1
557,511 - +0.4
557,511 - -0.6
557,511 - -0.1
557,553 + -0.9
557,579 + -1.0
557,579 + +0.1
557,579 + +0.8
557,579 + +0.1
557,579 + -0.5
557,579 + -0.3
557,580 - +0.2
557,580 - -1.2
557,580 - -0.5
558,059 + MPMX19_04218 0.41 -1.2
558,059 + MPMX19_04218 0.41 -1.0
558,059 + MPMX19_04218 0.41 -0.5
558,059 + MPMX19_04218 0.41 -1.5
558,059 + MPMX19_04218 0.41 -0.6
558,060 - MPMX19_04218 0.41 -0.7
558,060 - MPMX19_04218 0.41 -0.3
558,060 - MPMX19_04218 0.41 -2.1
558,146 + MPMX19_04218 0.52 -1.4
558,146 + MPMX19_04218 0.52 -0.4
558,146 + MPMX19_04218 0.52 -0.4
558,146 + MPMX19_04218 0.52 +0.3
558,146 + MPMX19_04218 0.52 +0.1
558,146 + MPMX19_04218 0.52 -1.8
558,146 + MPMX19_04218 0.52 -1.4
558,146 + MPMX19_04218 0.52 -1.3
558,147 - MPMX19_04218 0.52 +0.1
558,147 - MPMX19_04218 0.52 +0.2
558,147 - MPMX19_04218 0.52 -0.0
558,147 - MPMX19_04218 0.52 -2.2
558,147 - MPMX19_04218 0.52 -1.4
558,147 - MPMX19_04218 0.52 -0.9
558,182 + MPMX19_04218 0.56 -1.0
558,182 + MPMX19_04218 0.56 -1.0
558,182 + MPMX19_04218 0.56 +0.2
558,182 + MPMX19_04218 0.56 +0.8
558,183 - MPMX19_04218 0.56 -1.8
558,183 - MPMX19_04218 0.56 +0.1
558,233 + MPMX19_04218 0.62 +0.7
558,233 + MPMX19_04218 0.62 -1.1
558,234 - MPMX19_04218 0.63 -1.9
558,234 - MPMX19_04218 0.63 -0.2
558,234 - MPMX19_04218 0.63 -1.3
558,240 + MPMX19_04218 0.63 -0.1
558,240 + MPMX19_04218 0.63 +0.8
558,240 + MPMX19_04218 0.63 -0.8
558,241 - MPMX19_04218 0.63 -0.4
558,241 - MPMX19_04218 0.63 -0.5
558,678 + +0.4
558,678 + -0.0
558,678 + -0.0
558,679 - +0.2
558,679 - -1.5
558,679 - -1.5
558,679 - -1.7
558,679 - +0.7
558,762 + MPMX19_04219 0.11 -0.5
558,763 - MPMX19_04219 0.11 +0.0
558,763 - MPMX19_04219 0.11 -2.2
558,912 + MPMX19_04219 0.20 -0.5
558,912 + MPMX19_04219 0.20 -0.1
558,912 + MPMX19_04219 0.20 -1.5
558,913 - MPMX19_04219 0.20 -1.5
558,913 - MPMX19_04219 0.20 +0.5
558,913 - MPMX19_04219 0.20 -0.0
558,913 - MPMX19_04219 0.20 -1.2
558,913 - MPMX19_04219 0.20 -0.5
559,241 + MPMX19_04219 0.40 -1.9
559,242 - MPMX19_04219 0.41 -0.2
559,242 - MPMX19_04219 0.41 -1.1
559,498 + MPMX19_04219 0.56 +0.5

Or see this region's nucleotide sequence