Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04202

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04200 and MPMX19_04201 are separated by 32 nucleotidesMPMX19_04201 and MPMX19_04202 are separated by 126 nucleotidesMPMX19_04202 and MPMX19_04203 overlap by 4 nucleotidesMPMX19_04203 and MPMX19_04204 overlap by 4 nucleotides MPMX19_04200: MPMX19_04200 - 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase, at 535,010 to 535,774 _04200 MPMX19_04201: MPMX19_04201 - hypothetical protein, at 535,807 to 536,040 _04201 MPMX19_04202: MPMX19_04202 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 536,167 to 536,928 _04202 MPMX19_04203: MPMX19_04203 - hypothetical protein, at 536,925 to 537,173 _04203 MPMX19_04204: MPMX19_04204 - D-alanine--D-alanyl carrier protein ligase, at 537,170 to 538,339 _04204 Position (kb) 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 535.266 kb on + strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.267 kb on - strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.400 kb on + strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.401 kb on - strand, within MPMX19_04200at 535.425 kb on - strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.523 kb on + strand, within MPMX19_04200at 535.524 kb on - strand, within MPMX19_04200at 535.530 kb on - strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.634 kb on + strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200at 535.635 kb on - strand, within MPMX19_04200at 536.137 kb on + strandat 536.137 kb on + strandat 536.137 kb on + strandat 536.137 kb on + strandat 536.137 kb on + strandat 536.137 kb on + strandat 536.138 kb on - strandat 536.138 kb on - strandat 536.139 kb on + strandat 536.139 kb on + strandat 536.139 kb on + strandat 536.139 kb on + strandat 536.139 kb on + strandat 536.140 kb on - strandat 536.140 kb on - strandat 536.140 kb on - strandat 536.140 kb on - strandat 536.140 kb on - strandat 536.140 kb on - strandat 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.392 kb on + strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.393 kb on - strand, within MPMX19_04202at 536.504 kb on + strand, within MPMX19_04202at 536.504 kb on + strand, within MPMX19_04202at 536.505 kb on - strand, within MPMX19_04202at 536.505 kb on - strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 536.823 kb on + strand, within MPMX19_04202at 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.156 kb on + strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.157 kb on - strandat 537.524 kb on + strand, within MPMX19_04204at 537.524 kb on + strand, within MPMX19_04204at 537.524 kb on + strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.525 kb on - strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.808 kb on + strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.809 kb on - strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.812 kb on + strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204at 537.813 kb on - strand, within MPMX19_04204

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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535,266 + MPMX19_04200 0.33 -0.0
535,267 - MPMX19_04200 0.34 +1.3
535,267 - MPMX19_04200 0.34 -0.4
535,267 - MPMX19_04200 0.34 -1.7
535,267 - MPMX19_04200 0.34 -0.2
535,267 - MPMX19_04200 0.34 -0.9
535,267 - MPMX19_04200 0.34 -0.7
535,267 - MPMX19_04200 0.34 -1.0
535,400 + MPMX19_04200 0.51 -2.0
535,400 + MPMX19_04200 0.51 -0.7
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -0.6
535,400 + MPMX19_04200 0.51 -1.5
535,400 + MPMX19_04200 0.51 +0.6
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -1.4
535,400 + MPMX19_04200 0.51 -0.6
535,400 + MPMX19_04200 0.51 +0.4
535,400 + MPMX19_04200 0.51 -0.2
535,400 + MPMX19_04200 0.51 -0.3
535,400 + MPMX19_04200 0.51 -0.9
535,400 + MPMX19_04200 0.51 -0.8
535,401 - MPMX19_04200 0.51 +0.1
535,401 - MPMX19_04200 0.51 -1.2
535,401 - MPMX19_04200 0.51 -0.8
535,401 - MPMX19_04200 0.51 +0.1
535,401 - MPMX19_04200 0.51 -0.6
535,401 - MPMX19_04200 0.51 -0.9
535,425 - MPMX19_04200 0.54 -0.5
535,523 + MPMX19_04200 0.67 -0.5
535,523 + MPMX19_04200 0.67 -1.2
535,523 + MPMX19_04200 0.67 -0.3
535,523 + MPMX19_04200 0.67 -1.2
535,523 + MPMX19_04200 0.67 +0.0
535,524 - MPMX19_04200 0.67 -1.0
535,530 - MPMX19_04200 0.68 -0.2
535,634 + MPMX19_04200 0.82 -1.0
535,634 + MPMX19_04200 0.82 +1.9
535,634 + MPMX19_04200 0.82 -0.4
535,634 + MPMX19_04200 0.82 +0.2
535,634 + MPMX19_04200 0.82 -2.7
535,634 + MPMX19_04200 0.82 -1.2
535,635 - MPMX19_04200 0.82 +0.1
535,635 - MPMX19_04200 0.82 -0.0
535,635 - MPMX19_04200 0.82 -0.8
536,137 + -0.7
536,137 + -0.4
536,137 + +0.5
536,137 + -0.6
536,137 + -0.5
536,137 + -0.2
536,138 - -0.2
536,138 - -1.3
536,139 + +0.8
536,139 + +0.2
536,139 + +1.5
536,139 + -1.4
536,139 + +0.5
536,140 - +0.2
536,140 - -0.3
536,140 - +0.3
536,140 - +0.1
536,140 - -0.3
536,140 - -0.3
536,392 + MPMX19_04202 0.30 +0.7
536,392 + MPMX19_04202 0.30 -1.4
536,392 + MPMX19_04202 0.30 +0.8
536,392 + MPMX19_04202 0.30 -0.5
536,393 - MPMX19_04202 0.30 -2.1
536,393 - MPMX19_04202 0.30 -0.5
536,393 - MPMX19_04202 0.30 -0.8
536,393 - MPMX19_04202 0.30 +0.6
536,393 - MPMX19_04202 0.30 +2.0
536,504 + MPMX19_04202 0.44 -0.8
536,504 + MPMX19_04202 0.44 -1.0
536,505 - MPMX19_04202 0.44 +1.2
536,505 - MPMX19_04202 0.44 -0.2
536,823 + MPMX19_04202 0.86 -0.8
536,823 + MPMX19_04202 0.86 -0.6
536,823 + MPMX19_04202 0.86 +0.3
536,823 + MPMX19_04202 0.86 -0.4
536,823 + MPMX19_04202 0.86 -0.2
536,823 + MPMX19_04202 0.86 +0.6
536,823 + MPMX19_04202 0.86 -2.4
537,156 + +0.1
537,156 + +0.1
537,156 + -2.9
537,156 + -0.2
537,156 + +1.0
537,157 - -0.8
537,157 - -1.0
537,157 - +0.1
537,157 - -1.5
537,157 - -0.5
537,157 - -0.6
537,524 + MPMX19_04204 0.30 +0.0
537,524 + MPMX19_04204 0.30 -0.5
537,524 + MPMX19_04204 0.30 -1.5
537,525 - MPMX19_04204 0.30 +0.9
537,525 - MPMX19_04204 0.30 -1.3
537,525 - MPMX19_04204 0.30 -0.3
537,525 - MPMX19_04204 0.30 +0.4
537,525 - MPMX19_04204 0.30 -1.4
537,808 + MPMX19_04204 0.55 -0.9
537,808 + MPMX19_04204 0.55 -0.9
537,808 + MPMX19_04204 0.55 +3.4
537,808 + MPMX19_04204 0.55 +0.2
537,808 + MPMX19_04204 0.55 -0.4
537,808 + MPMX19_04204 0.55 +1.0
537,808 + MPMX19_04204 0.55 -0.4
537,808 + MPMX19_04204 0.55 -0.0
537,808 + MPMX19_04204 0.55 -2.4
537,808 + MPMX19_04204 0.55 +1.0
537,808 + MPMX19_04204 0.55 -1.0
537,809 - MPMX19_04204 0.55 +0.4
537,809 - MPMX19_04204 0.55 -0.5
537,809 - MPMX19_04204 0.55 -0.8
537,809 - MPMX19_04204 0.55 -0.2
537,809 - MPMX19_04204 0.55 +0.6
537,809 - MPMX19_04204 0.55 -1.3
537,809 - MPMX19_04204 0.55 -1.1
537,809 - MPMX19_04204 0.55 +1.9
537,809 - MPMX19_04204 0.55 -0.7
537,809 - MPMX19_04204 0.55 -1.2
537,812 + MPMX19_04204 0.55 -2.7
537,812 + MPMX19_04204 0.55 -0.8
537,812 + MPMX19_04204 0.55 -0.1
537,812 + MPMX19_04204 0.55 +0.6
537,812 + MPMX19_04204 0.55 -0.2
537,812 + MPMX19_04204 0.55 -0.5
537,812 + MPMX19_04204 0.55 +1.2
537,812 + MPMX19_04204 0.55 -0.9
537,812 + MPMX19_04204 0.55 -0.3
537,813 - MPMX19_04204 0.55 +0.4
537,813 - MPMX19_04204 0.55 -1.0
537,813 - MPMX19_04204 0.55 +0.4
537,813 - MPMX19_04204 0.55 -1.8
537,813 - MPMX19_04204 0.55 -0.6
537,813 - MPMX19_04204 0.55 -0.3
537,813 - MPMX19_04204 0.55 +0.1
537,813 - MPMX19_04204 0.55 +0.0
537,813 - MPMX19_04204 0.55 -0.0
537,813 - MPMX19_04204 0.55 +1.0
537,813 - MPMX19_04204 0.55 +0.5
537,813 - MPMX19_04204 0.55 +0.3
537,813 - MPMX19_04204 0.55 -0.3
537,813 - MPMX19_04204 0.55 +1.0
537,813 - MPMX19_04204 0.55 -0.5
537,813 - MPMX19_04204 0.55 -0.8
537,813 - MPMX19_04204 0.55 +1.4
537,813 - MPMX19_04204 0.55 +0.1
537,813 - MPMX19_04204 0.55 -1.4

Or see this region's nucleotide sequence