Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04178

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04176 and MPMX19_04177 are separated by 17 nucleotidesMPMX19_04177 and MPMX19_04178 are separated by 343 nucleotidesMPMX19_04178 and MPMX19_04179 are separated by 90 nucleotides MPMX19_04176: MPMX19_04176 - Long-chain-fatty-acid--CoA ligase, at 501,283 to 502,908 _04176 MPMX19_04177: MPMX19_04177 - hypothetical protein, at 502,926 to 503,219 _04177 MPMX19_04178: MPMX19_04178 - hypothetical protein, at 503,563 to 504,495 _04178 MPMX19_04179: MPMX19_04179 - D-inositol-3-phosphate glycosyltransferase, at 504,586 to 505,755 _04179 Position (kb) 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.589 kb on + strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.590 kb on - strand, within MPMX19_04176at 502.673 kb on + strand, within MPMX19_04176at 502.673 kb on + strand, within MPMX19_04176at 502.673 kb on + strand, within MPMX19_04176at 502.673 kb on + strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 502.674 kb on - strand, within MPMX19_04176at 503.263 kb on + strandat 503.263 kb on + strandat 503.263 kb on + strandat 503.263 kb on + strandat 503.263 kb on + strandat 503.263 kb on + strandat 503.264 kb on - strandat 503.351 kb on + strandat 503.352 kb on - strandat 503.418 kb on - strandat 503.427 kb on + strandat 503.466 kb on + strandat 503.466 kb on + strandat 503.467 kb on - strandat 503.467 kb on - strandat 503.550 kb on + strandat 503.550 kb on + strandat 503.555 kb on - strandat 503.558 kb on + strandat 503.559 kb on - strandat 503.975 kb on + strand, within MPMX19_04178at 503.975 kb on + strand, within MPMX19_04178at 504.149 kb on + strand, within MPMX19_04178at 504.149 kb on + strand, within MPMX19_04178at 504.149 kb on + strand, within MPMX19_04178at 504.150 kb on - strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.185 kb on + strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.186 kb on - strand, within MPMX19_04178at 504.275 kb on + strand, within MPMX19_04178at 504.283 kb on + strand, within MPMX19_04178at 504.344 kb on + strand, within MPMX19_04178at 504.344 kb on + strand, within MPMX19_04178at 504.344 kb on + strand, within MPMX19_04178at 504.344 kb on + strand, within MPMX19_04178at 504.345 kb on - strand, within MPMX19_04178at 504.356 kb on + strand, within MPMX19_04178at 504.357 kb on - strand, within MPMX19_04178at 504.357 kb on - strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.401 kb on + strand, within MPMX19_04178at 504.402 kb on - strandat 504.402 kb on - strandat 504.689 kb on + strandat 504.689 kb on + strandat 504.689 kb on + strandat 504.690 kb on - strandat 504.807 kb on + strand, within MPMX19_04179at 504.808 kb on - strand, within MPMX19_04179at 505.073 kb on + strand, within MPMX19_04179at 505.073 kb on + strand, within MPMX19_04179at 505.073 kb on + strand, within MPMX19_04179at 505.073 kb on + strand, within MPMX19_04179at 505.073 kb on + strand, within MPMX19_04179at 505.074 kb on - strand, within MPMX19_04179at 505.074 kb on - strand, within MPMX19_04179at 505.074 kb on - strand, within MPMX19_04179at 505.074 kb on - strand, within MPMX19_04179at 505.074 kb on - strand, within MPMX19_04179

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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502,589 + MPMX19_04176 0.80 +0.0
502,589 + MPMX19_04176 0.80 -0.8
502,589 + MPMX19_04176 0.80 -1.5
502,589 + MPMX19_04176 0.80 +0.0
502,589 + MPMX19_04176 0.80 +0.8
502,589 + MPMX19_04176 0.80 +1.0
502,589 + MPMX19_04176 0.80 -1.7
502,589 + MPMX19_04176 0.80 -0.1
502,589 + MPMX19_04176 0.80 +1.3
502,589 + MPMX19_04176 0.80 -0.2
502,589 + MPMX19_04176 0.80 -0.9
502,590 - MPMX19_04176 0.80 +0.0
502,590 - MPMX19_04176 0.80 -1.1
502,590 - MPMX19_04176 0.80 -0.4
502,590 - MPMX19_04176 0.80 +0.4
502,590 - MPMX19_04176 0.80 -1.2
502,590 - MPMX19_04176 0.80 +0.6
502,590 - MPMX19_04176 0.80 -1.3
502,590 - MPMX19_04176 0.80 -1.2
502,590 - MPMX19_04176 0.80 -0.7
502,590 - MPMX19_04176 0.80 -0.8
502,590 - MPMX19_04176 0.80 -1.2
502,590 - MPMX19_04176 0.80 -0.2
502,590 - MPMX19_04176 0.80 +0.1
502,590 - MPMX19_04176 0.80 +0.6
502,590 - MPMX19_04176 0.80 +0.6
502,590 - MPMX19_04176 0.80 -1.0
502,590 - MPMX19_04176 0.80 -0.2
502,590 - MPMX19_04176 0.80 +0.5
502,590 - MPMX19_04176 0.80 -0.5
502,590 - MPMX19_04176 0.80 -0.4
502,673 + MPMX19_04176 0.85 +0.8
502,673 + MPMX19_04176 0.85 -0.6
502,673 + MPMX19_04176 0.85 +0.7
502,673 + MPMX19_04176 0.85 +1.2
502,674 - MPMX19_04176 0.86 +0.2
502,674 - MPMX19_04176 0.86 +0.2
502,674 - MPMX19_04176 0.86 -0.7
502,674 - MPMX19_04176 0.86 +0.2
502,674 - MPMX19_04176 0.86 +0.9
502,674 - MPMX19_04176 0.86 -1.7
503,263 + -1.7
503,263 + +0.1
503,263 + +0.2
503,263 + +1.3
503,263 + -2.1
503,263 + +0.1
503,264 - -1.8
503,351 + +0.6
503,352 - -0.5
503,418 - -2.0
503,427 + -1.4
503,466 + -0.8
503,466 + -0.9
503,467 - -0.9
503,467 - -1.3
503,550 + +0.7
503,550 + +0.3
503,555 - -2.8
503,558 + -0.7
503,559 - -0.5
503,975 + MPMX19_04178 0.44 -0.5
503,975 + MPMX19_04178 0.44 -0.1
504,149 + MPMX19_04178 0.63 -1.2
504,149 + MPMX19_04178 0.63 -1.5
504,149 + MPMX19_04178 0.63 -0.4
504,150 - MPMX19_04178 0.63 +0.5
504,185 + MPMX19_04178 0.67 +1.8
504,185 + MPMX19_04178 0.67 +1.2
504,185 + MPMX19_04178 0.67 -0.3
504,185 + MPMX19_04178 0.67 -1.2
504,185 + MPMX19_04178 0.67 -1.0
504,185 + MPMX19_04178 0.67 -1.2
504,185 + MPMX19_04178 0.67 -2.4
504,185 + MPMX19_04178 0.67 -0.3
504,185 + MPMX19_04178 0.67 -1.9
504,185 + MPMX19_04178 0.67 -0.8
504,185 + MPMX19_04178 0.67 -1.2
504,185 + MPMX19_04178 0.67 -0.1
504,185 + MPMX19_04178 0.67 -1.9
504,185 + MPMX19_04178 0.67 -0.1
504,185 + MPMX19_04178 0.67 -0.8
504,185 + MPMX19_04178 0.67 -0.3
504,185 + MPMX19_04178 0.67 -0.5
504,185 + MPMX19_04178 0.67 -2.6
504,185 + MPMX19_04178 0.67 -1.3
504,185 + MPMX19_04178 0.67 -0.5
504,185 + MPMX19_04178 0.67 +0.3
504,185 + MPMX19_04178 0.67 -0.5
504,185 + MPMX19_04178 0.67 +1.3
504,185 + MPMX19_04178 0.67 -1.2
504,185 + MPMX19_04178 0.67 -2.0
504,185 + MPMX19_04178 0.67 +1.0
504,185 + MPMX19_04178 0.67 -0.7
504,186 - MPMX19_04178 0.67 -0.0
504,186 - MPMX19_04178 0.67 -1.5
504,186 - MPMX19_04178 0.67 +1.0
504,186 - MPMX19_04178 0.67 -1.1
504,186 - MPMX19_04178 0.67 +0.3
504,186 - MPMX19_04178 0.67 -1.4
504,186 - MPMX19_04178 0.67 -0.5
504,186 - MPMX19_04178 0.67 -0.1
504,186 - MPMX19_04178 0.67 -0.7
504,186 - MPMX19_04178 0.67 +0.5
504,186 - MPMX19_04178 0.67 +1.1
504,186 - MPMX19_04178 0.67 -0.1
504,186 - MPMX19_04178 0.67 +0.4
504,186 - MPMX19_04178 0.67 +1.0
504,186 - MPMX19_04178 0.67 +0.2
504,186 - MPMX19_04178 0.67 -1.5
504,186 - MPMX19_04178 0.67 +0.4
504,186 - MPMX19_04178 0.67 +0.0
504,186 - MPMX19_04178 0.67 -0.1
504,186 - MPMX19_04178 0.67 -1.6
504,186 - MPMX19_04178 0.67 -0.9
504,186 - MPMX19_04178 0.67 -0.5
504,275 + MPMX19_04178 0.76 -0.5
504,283 + MPMX19_04178 0.77 -0.6
504,344 + MPMX19_04178 0.84 -0.5
504,344 + MPMX19_04178 0.84 -1.7
504,344 + MPMX19_04178 0.84 +0.2
504,344 + MPMX19_04178 0.84 -1.8
504,345 - MPMX19_04178 0.84 +1.1
504,356 + MPMX19_04178 0.85 -0.0
504,357 - MPMX19_04178 0.85 +0.2
504,357 - MPMX19_04178 0.85 +0.1
504,401 + MPMX19_04178 0.90 -0.8
504,401 + MPMX19_04178 0.90 -1.1
504,401 + MPMX19_04178 0.90 -0.7
504,401 + MPMX19_04178 0.90 -0.4
504,401 + MPMX19_04178 0.90 +1.5
504,401 + MPMX19_04178 0.90 +0.5
504,401 + MPMX19_04178 0.90 -0.8
504,401 + MPMX19_04178 0.90 -0.5
504,402 - -1.8
504,402 - +0.8
504,689 + -1.2
504,689 + -1.2
504,689 + -0.5
504,690 - +0.9
504,807 + MPMX19_04179 0.19 +0.2
504,808 - MPMX19_04179 0.19 -1.3
505,073 + MPMX19_04179 0.42 +0.3
505,073 + MPMX19_04179 0.42 -0.5
505,073 + MPMX19_04179 0.42 -0.5
505,073 + MPMX19_04179 0.42 +0.2
505,073 + MPMX19_04179 0.42 +1.3
505,074 - MPMX19_04179 0.42 -0.4
505,074 - MPMX19_04179 0.42 -0.3
505,074 - MPMX19_04179 0.42 -1.4
505,074 - MPMX19_04179 0.42 -1.2
505,074 - MPMX19_04179 0.42 +0.6

Or see this region's nucleotide sequence