Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04160 and MPMX19_04161 are separated by 58 nucleotides MPMX19_04161 and MPMX19_04162 are separated by 124 nucleotides MPMX19_04162 and MPMX19_04163 are separated by 6 nucleotides
MPMX19_04160: MPMX19_04160 - hypothetical protein, at 477,004 to 478,191
_04160
MPMX19_04161: MPMX19_04161 - hypothetical protein, at 478,250 to 479,044
_04161
MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582
_04162
MPMX19_04163: MPMX19_04163 - hypothetical protein, at 482,589 to 483,812
_04163
Position (kb) 479
480
481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 478.189 kb on + strand at 478.189 kb on + strand at 478.190 kb on - strand at 478.190 kb on - strand at 478.190 kb on - strand at 478.342 kb on + strand, within MPMX19_04161 at 478.342 kb on + strand, within MPMX19_04161 at 478.342 kb on + strand, within MPMX19_04161 at 478.342 kb on + strand, within MPMX19_04161 at 478.342 kb on + strand, within MPMX19_04161 at 478.343 kb on - strand, within MPMX19_04161 at 478.343 kb on - strand, within MPMX19_04161 at 478.343 kb on - strand, within MPMX19_04161 at 479.061 kb on - strand at 479.061 kb on - strand at 479.072 kb on + strand at 479.072 kb on + strand at 479.072 kb on + strand at 479.073 kb on - strand at 479.073 kb on - strand at 479.073 kb on - strand at 479.101 kb on + strand at 479.101 kb on + strand at 479.102 kb on - strand at 479.102 kb on - strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.150 kb on + strand at 479.246 kb on - strand at 479.246 kb on - strand at 479.607 kb on + strand, within MPMX19_04162 at 479.607 kb on + strand, within MPMX19_04162 at 479.607 kb on + strand, within MPMX19_04162 at 479.607 kb on + strand, within MPMX19_04162 at 479.608 kb on - strand, within MPMX19_04162 at 479.608 kb on - strand, within MPMX19_04162 at 479.608 kb on - strand, within MPMX19_04162 at 479.608 kb on - strand, within MPMX19_04162 at 479.608 kb on - strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.649 kb on + strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.650 kb on - strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.784 kb on + strand, within MPMX19_04162 at 479.785 kb on - strand, within MPMX19_04162 at 479.785 kb on - strand, within MPMX19_04162 at 479.785 kb on - strand, within MPMX19_04162 at 479.785 kb on - strand, within MPMX19_04162 at 479.785 kb on - strand, within MPMX19_04162 at 479.958 kb on + strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 479.959 kb on - strand, within MPMX19_04162 at 480.250 kb on + strand, within MPMX19_04162 at 480.443 kb on - strand, within MPMX19_04162 at 480.443 kb on - strand, within MPMX19_04162 at 480.598 kb on - strand, within MPMX19_04162 at 480.598 kb on - strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.681 kb on + strand, within MPMX19_04162 at 480.682 kb on - strand, within MPMX19_04162 at 480.682 kb on - strand, within MPMX19_04162 at 480.682 kb on - strand, within MPMX19_04162 at 480.682 kb on - strand, within MPMX19_04162 at 480.682 kb on - strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.908 kb on + strand, within MPMX19_04162 at 480.909 kb on - strand, within MPMX19_04162 at 480.909 kb on - strand, within MPMX19_04162 at 481.035 kb on + strand, within MPMX19_04162 at 481.466 kb on + strand, within MPMX19_04162 at 481.472 kb on + strand, within MPMX19_04162 at 481.472 kb on + strand, within MPMX19_04162 at 481.473 kb on - strand, within MPMX19_04162 at 481.498 kb on + strand, within MPMX19_04162 at 481.730 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.872 kb on + strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.873 kb on - strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.878 kb on + strand, within MPMX19_04162 at 481.879 kb on - strand, within MPMX19_04162 at 481.879 kb on - strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.064 kb on + strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.065 kb on - strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.169 kb on + strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.170 kb on - strand, within MPMX19_04162 at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.580 kb on + strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 482.581 kb on - strand at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.244 kb on + strand, within MPMX19_04163 at 483.245 kb on - strand, within MPMX19_04163 at 483.245 kb on - strand, within MPMX19_04163 at 483.307 kb on + strand, within MPMX19_04163 at 483.307 kb on + strand, within MPMX19_04163 at 483.308 kb on - strand, within MPMX19_04163 at 483.308 kb on - strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.355 kb on + strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163 at 483.356 kb on - strand, within MPMX19_04163
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 478,189 + +0.0 478,189 + -0.2 478,190 - -0.2 478,190 - +2.4 478,190 - -0.5 478,342 + MPMX19_04161 0.12 +0.2 478,342 + MPMX19_04161 0.12 -0.9 478,342 + MPMX19_04161 0.12 -1.7 478,342 + MPMX19_04161 0.12 -1.9 478,342 + MPMX19_04161 0.12 +0.5 478,343 - MPMX19_04161 0.12 +0.8 478,343 - MPMX19_04161 0.12 +1.6 478,343 - MPMX19_04161 0.12 +1.8 479,061 - +0.1 479,061 - -0.3 479,072 + -1.0 479,072 + -1.4 479,072 + -0.4 479,073 - +1.2 479,073 - +0.2 479,073 - -2.4 479,101 + +0.2 479,101 + -0.5 479,102 - -1.3 479,102 - -1.9 479,150 + -0.4 479,150 + -1.5 479,150 + +0.1 479,150 + +0.1 479,246 - +0.5 479,246 - -1.0 479,607 + MPMX19_04162 0.13 +0.1 479,607 + MPMX19_04162 0.13 +0.2 479,607 + MPMX19_04162 0.13 -0.7 479,607 + MPMX19_04162 0.13 -1.3 479,608 - MPMX19_04162 0.13 -0.5 479,608 - MPMX19_04162 0.13 -1.0 479,608 - MPMX19_04162 0.13 -0.9 479,608 - MPMX19_04162 0.13 -0.9 479,608 - MPMX19_04162 0.13 -0.5 479,649 + MPMX19_04162 0.14 -1.3 479,649 + MPMX19_04162 0.14 -0.1 479,649 + MPMX19_04162 0.14 -1.5 479,649 + MPMX19_04162 0.14 -0.5 479,649 + MPMX19_04162 0.14 +0.1 479,649 + MPMX19_04162 0.14 -1.2 479,650 - MPMX19_04162 0.14 -0.0 479,650 - MPMX19_04162 0.14 -1.1 479,650 - MPMX19_04162 0.14 +1.8 479,650 - MPMX19_04162 0.14 +0.0 479,650 - MPMX19_04162 0.14 -0.2 479,650 - MPMX19_04162 0.14 +0.3 479,784 + MPMX19_04162 0.18 +0.5 479,784 + MPMX19_04162 0.18 +0.9 479,784 + MPMX19_04162 0.18 -0.7 479,784 + MPMX19_04162 0.18 +1.1 479,784 + MPMX19_04162 0.18 +0.6 479,784 + MPMX19_04162 0.18 -0.5 479,784 + MPMX19_04162 0.18 -0.7 479,784 + MPMX19_04162 0.18 -1.7 479,785 - MPMX19_04162 0.18 +1.4 479,785 - MPMX19_04162 0.18 -0.7 479,785 - MPMX19_04162 0.18 -0.3 479,785 - MPMX19_04162 0.18 -0.5 479,785 - MPMX19_04162 0.18 +1.5 479,958 + MPMX19_04162 0.23 -1.3 479,959 - MPMX19_04162 0.23 -0.7 479,959 - MPMX19_04162 0.23 +0.1 479,959 - MPMX19_04162 0.23 -0.2 479,959 - MPMX19_04162 0.23 -0.5 479,959 - MPMX19_04162 0.23 -0.5 479,959 - MPMX19_04162 0.23 +0.4 479,959 - MPMX19_04162 0.23 +0.2 479,959 - MPMX19_04162 0.23 -0.1 480,250 + MPMX19_04162 0.32 +2.2 480,443 - MPMX19_04162 0.37 -0.3 480,443 - MPMX19_04162 0.37 -1.2 480,598 - MPMX19_04162 0.42 +1.4 480,598 - MPMX19_04162 0.42 -0.5 480,681 + MPMX19_04162 0.44 -0.5 480,681 + MPMX19_04162 0.44 +0.7 480,681 + MPMX19_04162 0.44 -0.0 480,681 + MPMX19_04162 0.44 +0.8 480,681 + MPMX19_04162 0.44 -2.0 480,681 + MPMX19_04162 0.44 +0.2 480,681 + MPMX19_04162 0.44 -1.2 480,681 + MPMX19_04162 0.44 +0.8 480,682 - MPMX19_04162 0.44 -0.2 480,682 - MPMX19_04162 0.44 +0.5 480,682 - MPMX19_04162 0.44 +1.1 480,682 - MPMX19_04162 0.44 -1.2 480,682 - MPMX19_04162 0.44 -1.3 480,908 + MPMX19_04162 0.51 -0.2 480,908 + MPMX19_04162 0.51 +0.1 480,908 + MPMX19_04162 0.51 +0.0 480,908 + MPMX19_04162 0.51 -1.7 480,908 + MPMX19_04162 0.51 +0.3 480,908 + MPMX19_04162 0.51 +0.8 480,908 + MPMX19_04162 0.51 +1.4 480,909 - MPMX19_04162 0.51 -0.5 480,909 - MPMX19_04162 0.51 -2.0 481,035 + MPMX19_04162 0.55 +0.5 481,466 + MPMX19_04162 0.67 -1.5 481,472 + MPMX19_04162 0.67 -1.0 481,472 + MPMX19_04162 0.67 -0.1 481,473 - MPMX19_04162 0.67 -0.7 481,498 + MPMX19_04162 0.68 -1.4 481,730 + MPMX19_04162 0.75 -0.7 481,872 + MPMX19_04162 0.79 -2.6 481,872 + MPMX19_04162 0.79 -0.9 481,872 + MPMX19_04162 0.79 -0.7 481,872 + MPMX19_04162 0.79 -1.1 481,872 + MPMX19_04162 0.79 +0.2 481,872 + MPMX19_04162 0.79 -0.0 481,872 + MPMX19_04162 0.79 -1.9 481,872 + MPMX19_04162 0.79 +0.2 481,873 - MPMX19_04162 0.79 -1.7 481,873 - MPMX19_04162 0.79 +0.1 481,873 - MPMX19_04162 0.79 +0.5 481,873 - MPMX19_04162 0.79 -0.8 481,873 - MPMX19_04162 0.79 -1.0 481,873 - MPMX19_04162 0.79 -1.4 481,873 - MPMX19_04162 0.79 +1.4 481,873 - MPMX19_04162 0.79 +0.5 481,873 - MPMX19_04162 0.79 +0.2 481,873 - MPMX19_04162 0.79 -1.9 481,878 + MPMX19_04162 0.79 -1.0 481,878 + MPMX19_04162 0.79 -0.5 481,878 + MPMX19_04162 0.79 +1.0 481,878 + MPMX19_04162 0.79 -0.9 481,879 - MPMX19_04162 0.79 -1.0 481,879 - MPMX19_04162 0.79 +0.2 482,064 + MPMX19_04162 0.85 -0.1 482,064 + MPMX19_04162 0.85 -1.1 482,064 + MPMX19_04162 0.85 -0.2 482,065 - MPMX19_04162 0.85 -0.5 482,065 - MPMX19_04162 0.85 -0.2 482,065 - MPMX19_04162 0.85 -1.0 482,065 - MPMX19_04162 0.85 -0.1 482,169 + MPMX19_04162 0.88 -0.8 482,169 + MPMX19_04162 0.88 -0.9 482,169 + MPMX19_04162 0.88 -0.8 482,169 + MPMX19_04162 0.88 -2.7 482,169 + MPMX19_04162 0.88 +0.0 482,169 + MPMX19_04162 0.88 -2.1 482,169 + MPMX19_04162 0.88 +1.8 482,169 + MPMX19_04162 0.88 -1.4 482,169 + MPMX19_04162 0.88 -4.0 482,169 + MPMX19_04162 0.88 -1.5 482,169 + MPMX19_04162 0.88 -1.5 482,169 + MPMX19_04162 0.88 -0.3 482,170 - MPMX19_04162 0.88 -0.7 482,170 - MPMX19_04162 0.88 +0.2 482,170 - MPMX19_04162 0.88 +1.0 482,170 - MPMX19_04162 0.88 +0.5 482,170 - MPMX19_04162 0.88 -0.5 482,170 - MPMX19_04162 0.88 -1.0 482,170 - MPMX19_04162 0.88 -0.9 482,170 - MPMX19_04162 0.88 +0.3 482,170 - MPMX19_04162 0.88 -3.2 482,170 - MPMX19_04162 0.88 -0.9 482,170 - MPMX19_04162 0.88 -0.5 482,580 + +1.4 482,580 + -1.2 482,580 + -1.0 482,580 + -1.0 482,580 + -1.3 482,581 - -1.2 482,581 - -2.2 482,581 - -0.4 482,581 - +0.5 482,581 - -1.8 482,581 - -0.3 483,244 + MPMX19_04163 0.54 -0.0 483,244 + MPMX19_04163 0.54 -0.2 483,244 + MPMX19_04163 0.54 +1.0 483,244 + MPMX19_04163 0.54 -1.2 483,244 + MPMX19_04163 0.54 -1.2 483,245 - MPMX19_04163 0.54 -0.3 483,245 - MPMX19_04163 0.54 -0.4 483,307 + MPMX19_04163 0.59 -1.7 483,307 + MPMX19_04163 0.59 -0.0 483,308 - MPMX19_04163 0.59 -0.8 483,308 - MPMX19_04163 0.59 -1.4 483,355 + MPMX19_04163 0.63 +0.3 483,355 + MPMX19_04163 0.63 -1.7 483,355 + MPMX19_04163 0.63 +0.8 483,355 + MPMX19_04163 0.63 +1.8 483,355 + MPMX19_04163 0.63 +0.8 483,355 + MPMX19_04163 0.63 +0.8 483,355 + MPMX19_04163 0.63 -1.5 483,355 + MPMX19_04163 0.63 -0.5 483,355 + MPMX19_04163 0.63 -1.1 483,355 + MPMX19_04163 0.63 -0.5 483,355 + MPMX19_04163 0.63 -0.4 483,355 + MPMX19_04163 0.63 -0.6 483,356 - MPMX19_04163 0.63 -3.0 483,356 - MPMX19_04163 0.63 -0.8 483,356 - MPMX19_04163 0.63 -2.2 483,356 - MPMX19_04163 0.63 -0.2 483,356 - MPMX19_04163 0.63 -0.8 483,356 - MPMX19_04163 0.63 -1.3 483,356 - MPMX19_04163 0.63 -0.6 483,356 - MPMX19_04163 0.63 -1.5 483,356 - MPMX19_04163 0.63 +0.3
Or see this region's nucleotide sequence