Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04157 and MPMX19_04158 overlap by 4 nucleotides MPMX19_04158 and MPMX19_04159 are separated by 55 nucleotides
MPMX19_04157: MPMX19_04157 - D-inositol-3-phosphate glycosyltransferase, at 471,847 to 473,235
_04157
MPMX19_04158: MPMX19_04158 - hypothetical protein, at 473,232 to 475,439
_04158
MPMX19_04159: MPMX19_04159 - D-inositol-3-phosphate glycosyltransferase, at 475,495 to 476,808
_04159
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.271 kb on + strand, within MPMX19_04157 at 472.272 kb on - strand, within MPMX19_04157 at 472.321 kb on + strand, within MPMX19_04157 at 472.321 kb on + strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.322 kb on - strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.336 kb on + strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.337 kb on - strand, within MPMX19_04157 at 472.339 kb on + strand, within MPMX19_04157 at 472.552 kb on + strand, within MPMX19_04157 at 472.552 kb on + strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.553 kb on - strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.669 kb on + strand, within MPMX19_04157 at 472.670 kb on - strand, within MPMX19_04157 at 472.780 kb on + strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.781 kb on - strand, within MPMX19_04157 at 472.859 kb on - strand, within MPMX19_04157 at 473.177 kb on - strand at 473.211 kb on + strand at 473.211 kb on + strand at 473.211 kb on + strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 473.212 kb on - strand at 474.099 kb on + strand, within MPMX19_04158 at 474.099 kb on + strand, within MPMX19_04158 at 474.099 kb on + strand, within MPMX19_04158 at 474.100 kb on - strand, within MPMX19_04158 at 474.811 kb on - strand, within MPMX19_04158 at 474.811 kb on - strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.035 kb on + strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.036 kb on - strand, within MPMX19_04158 at 475.101 kb on + strand, within MPMX19_04158 at 475.101 kb on + strand, within MPMX19_04158 at 475.101 kb on + strand, within MPMX19_04158 at 475.101 kb on + strand, within MPMX19_04158 at 475.102 kb on - strand, within MPMX19_04158 at 475.102 kb on - strand, within MPMX19_04158 at 475.237 kb on - strand at 475.295 kb on + strand at 475.295 kb on + strand at 475.296 kb on - strand at 475.296 kb on - strand at 475.437 kb on + strand at 475.438 kb on - strand at 475.438 kb on - strand at 475.438 kb on - strand at 475.438 kb on - strand at 475.573 kb on + strand at 475.573 kb on + strand at 475.573 kb on + strand at 475.573 kb on + strand at 475.573 kb on + strand at 475.573 kb on + strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.574 kb on - strand at 475.621 kb on + strand at 475.621 kb on + strand at 475.621 kb on + strand at 475.621 kb on + strand at 475.621 kb on + strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.622 kb on - strand at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.705 kb on + strand, within MPMX19_04159 at 475.706 kb on - strand, within MPMX19_04159 at 475.706 kb on - strand, within MPMX19_04159 at 475.706 kb on - strand, within MPMX19_04159 at 475.706 kb on - strand, within MPMX19_04159 at 475.706 kb on - strand, within MPMX19_04159 at 475.708 kb on + strand, within MPMX19_04159 at 475.708 kb on + strand, within MPMX19_04159 at 475.708 kb on + strand, within MPMX19_04159 at 475.708 kb on + strand, within MPMX19_04159 at 475.708 kb on + strand, within MPMX19_04159 at 475.709 kb on - strand, within MPMX19_04159 at 475.709 kb on - strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.720 kb on + strand, within MPMX19_04159 at 475.721 kb on - strand, within MPMX19_04159 at 475.721 kb on - strand, within MPMX19_04159 at 475.721 kb on - strand, within MPMX19_04159 at 475.780 kb on + strand, within MPMX19_04159 at 475.780 kb on + strand, within MPMX19_04159 at 475.780 kb on + strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.781 kb on - strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.903 kb on + strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 475.904 kb on - strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.071 kb on + strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.072 kb on - strand, within MPMX19_04159 at 476.104 kb on + strand, within MPMX19_04159 at 476.105 kb on - strand, within MPMX19_04159 at 476.356 kb on + strand, within MPMX19_04159 at 476.356 kb on + strand, within MPMX19_04159 at 476.356 kb on + strand, within MPMX19_04159 at 476.357 kb on - strand, within MPMX19_04159 at 476.410 kb on + strand, within MPMX19_04159 at 476.410 kb on + strand, within MPMX19_04159 at 476.411 kb on - strand, within MPMX19_04159 at 476.419 kb on + strand, within MPMX19_04159 at 476.419 kb on + strand, within MPMX19_04159 at 476.419 kb on + strand, within MPMX19_04159 at 476.419 kb on + strand, within MPMX19_04159 at 476.420 kb on - strand, within MPMX19_04159 at 476.420 kb on - strand, within MPMX19_04159
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 472,271 + MPMX19_04157 0.31 +1.4 472,272 - MPMX19_04157 0.31 -0.3 472,321 + MPMX19_04157 0.34 -1.2 472,321 + MPMX19_04157 0.34 -1.2 472,322 - MPMX19_04157 0.34 +0.5 472,322 - MPMX19_04157 0.34 -2.0 472,322 - MPMX19_04157 0.34 -0.7 472,322 - MPMX19_04157 0.34 -2.5 472,336 + MPMX19_04157 0.35 -0.7 472,336 + MPMX19_04157 0.35 -1.0 472,336 + MPMX19_04157 0.35 -0.4 472,336 + MPMX19_04157 0.35 -0.8 472,336 + MPMX19_04157 0.35 -1.0 472,336 + MPMX19_04157 0.35 -2.0 472,336 + MPMX19_04157 0.35 -0.6 472,336 + MPMX19_04157 0.35 -0.5 472,336 + MPMX19_04157 0.35 -1.2 472,337 - MPMX19_04157 0.35 +0.3 472,337 - MPMX19_04157 0.35 +0.5 472,337 - MPMX19_04157 0.35 +0.0 472,337 - MPMX19_04157 0.35 -2.3 472,337 - MPMX19_04157 0.35 +0.1 472,337 - MPMX19_04157 0.35 -0.1 472,337 - MPMX19_04157 0.35 -0.5 472,337 - MPMX19_04157 0.35 -2.4 472,337 - MPMX19_04157 0.35 +0.1 472,337 - MPMX19_04157 0.35 -0.5 472,337 - MPMX19_04157 0.35 -0.2 472,337 - MPMX19_04157 0.35 +0.2 472,337 - MPMX19_04157 0.35 -2.4 472,337 - MPMX19_04157 0.35 -0.5 472,337 - MPMX19_04157 0.35 -0.9 472,339 + MPMX19_04157 0.35 -0.6 472,552 + MPMX19_04157 0.51 -1.8 472,552 + MPMX19_04157 0.51 -0.9 472,553 - MPMX19_04157 0.51 -1.8 472,553 - MPMX19_04157 0.51 -1.2 472,553 - MPMX19_04157 0.51 +1.0 472,553 - MPMX19_04157 0.51 +1.0 472,553 - MPMX19_04157 0.51 +0.5 472,553 - MPMX19_04157 0.51 -0.8 472,669 + MPMX19_04157 0.59 -0.8 472,669 + MPMX19_04157 0.59 +0.8 472,669 + MPMX19_04157 0.59 -0.2 472,670 - MPMX19_04157 0.59 -0.8 472,780 + MPMX19_04157 0.67 -1.5 472,781 - MPMX19_04157 0.67 +0.5 472,781 - MPMX19_04157 0.67 +1.8 472,781 - MPMX19_04157 0.67 +0.2 472,859 - MPMX19_04157 0.73 +0.8 473,177 - -0.6 473,211 + -0.8 473,211 + -0.4 473,211 + +0.6 473,212 - -0.2 473,212 - -1.2 473,212 - -0.8 473,212 - +1.4 473,212 - -0.2 473,212 - +1.5 473,212 - -0.8 474,099 + MPMX19_04158 0.39 +0.2 474,099 + MPMX19_04158 0.39 -1.0 474,099 + MPMX19_04158 0.39 -0.1 474,100 - MPMX19_04158 0.39 -0.6 474,811 - MPMX19_04158 0.72 -0.7 474,811 - MPMX19_04158 0.72 -1.0 475,035 + MPMX19_04158 0.82 +1.2 475,035 + MPMX19_04158 0.82 -0.8 475,035 + MPMX19_04158 0.82 -1.4 475,035 + MPMX19_04158 0.82 +0.5 475,035 + MPMX19_04158 0.82 +0.1 475,035 + MPMX19_04158 0.82 -0.2 475,035 + MPMX19_04158 0.82 +0.6 475,035 + MPMX19_04158 0.82 +0.4 475,036 - MPMX19_04158 0.82 +1.4 475,036 - MPMX19_04158 0.82 -0.8 475,036 - MPMX19_04158 0.82 -0.0 475,036 - MPMX19_04158 0.82 -0.6 475,036 - MPMX19_04158 0.82 -0.5 475,036 - MPMX19_04158 0.82 -1.1 475,036 - MPMX19_04158 0.82 -0.7 475,036 - MPMX19_04158 0.82 -0.7 475,036 - MPMX19_04158 0.82 -0.3 475,036 - MPMX19_04158 0.82 +0.9 475,101 + MPMX19_04158 0.85 -0.6 475,101 + MPMX19_04158 0.85 +1.8 475,101 + MPMX19_04158 0.85 -0.6 475,101 + MPMX19_04158 0.85 +0.8 475,102 - MPMX19_04158 0.85 -0.5 475,102 - MPMX19_04158 0.85 -1.7 475,237 - +0.9 475,295 + -1.2 475,295 + -0.2 475,296 - +0.4 475,296 - -0.9 475,437 + -0.4 475,438 - -1.2 475,438 - -1.2 475,438 - -0.5 475,438 - +0.2 475,573 + +0.6 475,573 + -0.0 475,573 + +0.5 475,573 + -1.2 475,573 + -1.2 475,573 + -0.2 475,574 - -0.4 475,574 - +1.5 475,574 - +0.4 475,574 - -0.4 475,574 - +1.0 475,574 - -0.1 475,574 - +0.4 475,574 - +0.1 475,574 - +0.2 475,574 - -0.5 475,621 + -0.2 475,621 + +0.3 475,621 + -0.0 475,621 + -0.3 475,621 + +0.2 475,622 - -0.2 475,622 - +0.0 475,622 - +0.6 475,622 - -0.4 475,622 - -0.5 475,622 - +0.2 475,622 - +0.5 475,622 - +0.1 475,622 - +0.3 475,622 - +0.5 475,705 + MPMX19_04159 0.16 -1.9 475,705 + MPMX19_04159 0.16 +0.1 475,705 + MPMX19_04159 0.16 -0.7 475,705 + MPMX19_04159 0.16 -0.3 475,705 + MPMX19_04159 0.16 -0.2 475,705 + MPMX19_04159 0.16 +0.8 475,705 + MPMX19_04159 0.16 -2.0 475,706 - MPMX19_04159 0.16 +0.8 475,706 - MPMX19_04159 0.16 -1.2 475,706 - MPMX19_04159 0.16 +0.2 475,706 - MPMX19_04159 0.16 -0.1 475,706 - MPMX19_04159 0.16 -1.2 475,708 + MPMX19_04159 0.16 +0.2 475,708 + MPMX19_04159 0.16 -0.9 475,708 + MPMX19_04159 0.16 +1.8 475,708 + MPMX19_04159 0.16 +1.6 475,708 + MPMX19_04159 0.16 -1.4 475,709 - MPMX19_04159 0.16 -1.2 475,709 - MPMX19_04159 0.16 +1.6 475,720 + MPMX19_04159 0.17 -1.0 475,720 + MPMX19_04159 0.17 +0.0 475,720 + MPMX19_04159 0.17 -1.0 475,720 + MPMX19_04159 0.17 -1.3 475,720 + MPMX19_04159 0.17 +0.2 475,720 + MPMX19_04159 0.17 -0.5 475,721 - MPMX19_04159 0.17 +0.7 475,721 - MPMX19_04159 0.17 -1.2 475,721 - MPMX19_04159 0.17 -1.2 475,780 + MPMX19_04159 0.22 +0.8 475,780 + MPMX19_04159 0.22 +0.3 475,780 + MPMX19_04159 0.22 -0.4 475,781 - MPMX19_04159 0.22 -0.0 475,781 - MPMX19_04159 0.22 -0.1 475,781 - MPMX19_04159 0.22 -0.4 475,781 - MPMX19_04159 0.22 -1.4 475,781 - MPMX19_04159 0.22 +1.2 475,781 - MPMX19_04159 0.22 +0.6 475,903 + MPMX19_04159 0.31 +0.2 475,903 + MPMX19_04159 0.31 -0.4 475,903 + MPMX19_04159 0.31 -0.4 475,903 + MPMX19_04159 0.31 +0.2 475,903 + MPMX19_04159 0.31 +0.2 475,903 + MPMX19_04159 0.31 -0.4 475,903 + MPMX19_04159 0.31 -0.8 475,903 + MPMX19_04159 0.31 -0.5 475,903 + MPMX19_04159 0.31 -0.2 475,903 + MPMX19_04159 0.31 +0.0 475,903 + MPMX19_04159 0.31 -0.5 475,903 + MPMX19_04159 0.31 -1.2 475,903 + MPMX19_04159 0.31 +0.4 475,903 + MPMX19_04159 0.31 -0.8 475,903 + MPMX19_04159 0.31 -0.1 475,904 - MPMX19_04159 0.31 +0.8 475,904 - MPMX19_04159 0.31 -0.5 475,904 - MPMX19_04159 0.31 +0.3 475,904 - MPMX19_04159 0.31 +0.9 475,904 - MPMX19_04159 0.31 -1.6 475,904 - MPMX19_04159 0.31 -0.0 475,904 - MPMX19_04159 0.31 +0.8 475,904 - MPMX19_04159 0.31 -0.2 475,904 - MPMX19_04159 0.31 +0.6 475,904 - MPMX19_04159 0.31 +0.5 475,904 - MPMX19_04159 0.31 +1.2 475,904 - MPMX19_04159 0.31 +0.5 475,904 - MPMX19_04159 0.31 +1.8 475,904 - MPMX19_04159 0.31 +0.8 475,904 - MPMX19_04159 0.31 -0.3 475,904 - MPMX19_04159 0.31 -0.0 475,904 - MPMX19_04159 0.31 -0.7 476,071 + MPMX19_04159 0.44 +1.4 476,071 + MPMX19_04159 0.44 -1.0 476,071 + MPMX19_04159 0.44 +0.5 476,071 + MPMX19_04159 0.44 -0.1 476,071 + MPMX19_04159 0.44 +2.2 476,071 + MPMX19_04159 0.44 -1.0 476,072 - MPMX19_04159 0.44 -0.5 476,072 - MPMX19_04159 0.44 -1.0 476,072 - MPMX19_04159 0.44 -0.7 476,072 - MPMX19_04159 0.44 -0.8 476,072 - MPMX19_04159 0.44 -0.9 476,072 - MPMX19_04159 0.44 +0.5 476,104 + MPMX19_04159 0.46 -1.2 476,105 - MPMX19_04159 0.46 -0.1 476,356 + MPMX19_04159 0.66 +0.6 476,356 + MPMX19_04159 0.66 -0.5 476,356 + MPMX19_04159 0.66 -1.4 476,357 - MPMX19_04159 0.66 +0.3 476,410 + MPMX19_04159 0.70 -0.7 476,410 + MPMX19_04159 0.70 -1.4 476,411 - MPMX19_04159 0.70 -0.4 476,419 + MPMX19_04159 0.70 -0.3 476,419 + MPMX19_04159 0.70 +0.8 476,419 + MPMX19_04159 0.70 -0.3 476,419 + MPMX19_04159 0.70 +1.2 476,420 - MPMX19_04159 0.70 -1.3 476,420 - MPMX19_04159 0.70 +0.6
Or see this region's nucleotide sequence