Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04149

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04148 and MPMX19_04149 are separated by 5 nucleotidesMPMX19_04149 and MPMX19_04150 are separated by 13 nucleotidesMPMX19_04150 and MPMX19_04151 are separated by 51 nucleotides MPMX19_04148: MPMX19_04148 - Nitrate regulatory protein, at 459,216 to 460,577 _04148 MPMX19_04149: MPMX19_04149 - hypothetical protein, at 460,583 to 461,809 _04149 MPMX19_04150: MPMX19_04150 - hypothetical protein, at 461,823 to 462,395 _04150 MPMX19_04151: MPMX19_04151 - UDP-glucose 4-epimerase, at 462,447 to 463,460 _04151 Position (kb) 460 461 462Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.257 kb on + strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.258 kb on - strand, within MPMX19_04148at 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.446 kb on + strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.447 kb on - strandat 460.575 kb on + strandat 460.575 kb on + strandat 460.576 kb on - strandat 460.584 kb on + strandat 460.585 kb on - strandat 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.779 kb on + strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.780 kb on - strand, within MPMX19_04149at 460.853 kb on + strand, within MPMX19_04149at 460.853 kb on + strand, within MPMX19_04149at 461.781 kb on + strandat 461.782 kb on - strandat 461.782 kb on - strandat 461.845 kb on + strandat 461.846 kb on - strandat 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.893 kb on + strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 461.894 kb on - strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.052 kb on + strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.053 kb on - strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.082 kb on + strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.083 kb on - strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.103 kb on + strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.104 kb on - strand, within MPMX19_04150at 462.106 kb on + strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.107 kb on - strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.232 kb on + strand, within MPMX19_04150at 462.341 kb on + strandat 462.342 kb on - strandat 462.431 kb on - strandat 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.685 kb on + strand, within MPMX19_04151at 462.686 kb on - strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.709 kb on + strand, within MPMX19_04151at 462.710 kb on - strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.781 kb on + strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151at 462.782 kb on - strand, within MPMX19_04151

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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460,257 + MPMX19_04148 0.76 +1.0
460,257 + MPMX19_04148 0.76 -0.8
460,257 + MPMX19_04148 0.76 +0.0
460,257 + MPMX19_04148 0.76 -0.8
460,257 + MPMX19_04148 0.76 -0.1
460,257 + MPMX19_04148 0.76 -1.0
460,257 + MPMX19_04148 0.76 -0.2
460,257 + MPMX19_04148 0.76 +0.8
460,257 + MPMX19_04148 0.76 -0.7
460,257 + MPMX19_04148 0.76 -1.0
460,257 + MPMX19_04148 0.76 -1.2
460,258 - MPMX19_04148 0.77 -0.0
460,258 - MPMX19_04148 0.77 +2.8
460,258 - MPMX19_04148 0.77 -0.0
460,258 - MPMX19_04148 0.77 +1.5
460,258 - MPMX19_04148 0.77 -0.5
460,258 - MPMX19_04148 0.77 -0.5
460,446 + -0.6
460,446 + -0.1
460,446 + -0.3
460,446 + -1.0
460,446 + +0.4
460,446 + -0.4
460,446 + -3.0
460,446 + -0.2
460,446 + -0.2
460,446 + -0.1
460,446 + +0.2
460,446 + +0.1
460,446 + -1.9
460,447 - +0.2
460,447 - -0.6
460,447 - -0.2
460,447 - +0.3
460,447 - -0.2
460,447 - -2.6
460,447 - -1.9
460,447 - -1.2
460,447 - -0.9
460,447 - +0.5
460,447 - -0.8
460,447 - -0.7
460,575 + +1.2
460,575 + -1.2
460,576 - +3.0
460,584 + -1.4
460,585 - -0.2
460,779 + MPMX19_04149 0.16 -0.2
460,779 + MPMX19_04149 0.16 -1.2
460,779 + MPMX19_04149 0.16 -1.2
460,779 + MPMX19_04149 0.16 +1.4
460,779 + MPMX19_04149 0.16 +1.8
460,780 - MPMX19_04149 0.16 +0.5
460,780 - MPMX19_04149 0.16 +0.6
460,780 - MPMX19_04149 0.16 -1.0
460,780 - MPMX19_04149 0.16 -1.1
460,853 + MPMX19_04149 0.22 -1.4
460,853 + MPMX19_04149 0.22 +0.5
461,781 + -1.0
461,782 - +0.9
461,782 - -1.9
461,845 + -0.8
461,846 - +0.2
461,893 + MPMX19_04150 0.12 -0.0
461,893 + MPMX19_04150 0.12 -1.0
461,893 + MPMX19_04150 0.12 +1.3
461,893 + MPMX19_04150 0.12 -0.6
461,893 + MPMX19_04150 0.12 +0.6
461,894 - MPMX19_04150 0.12 -0.5
461,894 - MPMX19_04150 0.12 -0.8
462,052 + MPMX19_04150 0.40 -0.1
462,052 + MPMX19_04150 0.40 +1.1
462,052 + MPMX19_04150 0.40 -1.4
462,052 + MPMX19_04150 0.40 -2.0
462,052 + MPMX19_04150 0.40 -0.5
462,053 - MPMX19_04150 0.40 -0.8
462,053 - MPMX19_04150 0.40 -1.6
462,082 + MPMX19_04150 0.45 -1.0
462,082 + MPMX19_04150 0.45 +2.0
462,082 + MPMX19_04150 0.45 -0.2
462,082 + MPMX19_04150 0.45 -0.9
462,082 + MPMX19_04150 0.45 -1.5
462,083 - MPMX19_04150 0.45 -1.3
462,083 - MPMX19_04150 0.45 -1.7
462,083 - MPMX19_04150 0.45 +1.4
462,083 - MPMX19_04150 0.45 -1.7
462,083 - MPMX19_04150 0.45 +0.0
462,083 - MPMX19_04150 0.45 -0.6
462,103 + MPMX19_04150 0.49 +0.0
462,103 + MPMX19_04150 0.49 -1.2
462,103 + MPMX19_04150 0.49 -0.9
462,103 + MPMX19_04150 0.49 -0.5
462,103 + MPMX19_04150 0.49 -0.6
462,103 + MPMX19_04150 0.49 +0.8
462,103 + MPMX19_04150 0.49 -0.8
462,103 + MPMX19_04150 0.49 -1.4
462,103 + MPMX19_04150 0.49 +0.0
462,103 + MPMX19_04150 0.49 -1.0
462,104 - MPMX19_04150 0.49 +0.8
462,104 - MPMX19_04150 0.49 -0.7
462,104 - MPMX19_04150 0.49 -0.6
462,104 - MPMX19_04150 0.49 -0.1
462,104 - MPMX19_04150 0.49 -0.0
462,104 - MPMX19_04150 0.49 -0.6
462,104 - MPMX19_04150 0.49 -0.2
462,104 - MPMX19_04150 0.49 -0.0
462,104 - MPMX19_04150 0.49 -1.4
462,104 - MPMX19_04150 0.49 +0.7
462,104 - MPMX19_04150 0.49 -0.2
462,104 - MPMX19_04150 0.49 +0.2
462,104 - MPMX19_04150 0.49 -0.4
462,104 - MPMX19_04150 0.49 -0.0
462,104 - MPMX19_04150 0.49 -0.2
462,106 + MPMX19_04150 0.49 +1.1
462,107 - MPMX19_04150 0.50 -1.4
462,107 - MPMX19_04150 0.50 -1.6
462,107 - MPMX19_04150 0.50 -0.2
462,107 - MPMX19_04150 0.50 -1.2
462,107 - MPMX19_04150 0.50 -0.3
462,232 + MPMX19_04150 0.71 -1.7
462,232 + MPMX19_04150 0.71 -0.4
462,341 + +2.0
462,342 - -0.5
462,431 - -1.4
462,685 + MPMX19_04151 0.23 -1.3
462,685 + MPMX19_04151 0.23 +0.8
462,685 + MPMX19_04151 0.23 +0.9
462,686 - MPMX19_04151 0.24 +0.8
462,709 + MPMX19_04151 0.26 +0.3
462,709 + MPMX19_04151 0.26 -1.4
462,709 + MPMX19_04151 0.26 +0.3
462,709 + MPMX19_04151 0.26 -0.7
462,710 - MPMX19_04151 0.26 -0.9
462,781 + MPMX19_04151 0.33 -1.9
462,781 + MPMX19_04151 0.33 -0.4
462,781 + MPMX19_04151 0.33 -0.4
462,781 + MPMX19_04151 0.33 -0.1
462,781 + MPMX19_04151 0.33 -1.3
462,781 + MPMX19_04151 0.33 +0.5
462,781 + MPMX19_04151 0.33 -1.5
462,781 + MPMX19_04151 0.33 +0.6
462,782 - MPMX19_04151 0.33 -0.7
462,782 - MPMX19_04151 0.33 -1.3
462,782 - MPMX19_04151 0.33 +0.8
462,782 - MPMX19_04151 0.33 +0.4
462,782 - MPMX19_04151 0.33 +0.4
462,782 - MPMX19_04151 0.33 -0.7
462,782 - MPMX19_04151 0.33 +0.1
462,782 - MPMX19_04151 0.33 +0.2
462,782 - MPMX19_04151 0.33 -1.4
462,782 - MPMX19_04151 0.33 -0.4
462,782 - MPMX19_04151 0.33 -1.5
462,782 - MPMX19_04151 0.33 +0.5
462,782 - MPMX19_04151 0.33 +0.8
462,782 - MPMX19_04151 0.33 -1.2
462,782 - MPMX19_04151 0.33 -1.9
462,782 - MPMX19_04151 0.33 -1.2

Or see this region's nucleotide sequence