Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04146

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04144 and MPMX19_04145 are separated by 116 nucleotidesMPMX19_04145 and MPMX19_04146 are separated by 71 nucleotidesMPMX19_04146 and MPMX19_04147 are separated by 117 nucleotidesMPMX19_04147 and MPMX19_04148 are separated by 290 nucleotides MPMX19_04144: MPMX19_04144 - putative manganese efflux pump MntP, at 455,919 to 456,521 _04144 MPMX19_04145: MPMX19_04145 - hypothetical protein, at 456,638 to 457,330 _04145 MPMX19_04146: MPMX19_04146 - L-lactate dehydrogenase, at 457,402 to 458,616 _04146 MPMX19_04147: MPMX19_04147 - hypothetical protein, at 458,734 to 458,925 _04147 MPMX19_04148: MPMX19_04148 - Nitrate regulatory protein, at 459,216 to 460,577 _04148 Position (kb) 457 458 459Strain fitness (log2 ratio) -2 -1 0 1 2 3at 456.596 kb on + strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.662 kb on - strandat 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.269 kb on - strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.416 kb on + strandat 457.417 kb on - strandat 457.417 kb on - strandat 457.553 kb on + strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.450 kb on + strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.451 kb on - strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.465 kb on + strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.466 kb on - strand, within MPMX19_04146at 458.483 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.489 kb on + strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 458.490 kb on - strand, within MPMX19_04146at 459.093 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.129 kb on + strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.130 kb on - strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.140 kb on + strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.141 kb on - strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.153 kb on + strandat 459.154 kb on - strandat 459.154 kb on - strandat 459.201 kb on - strandat 459.201 kb on - strandat 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.375 kb on + strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.376 kb on - strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.516 kb on + strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.517 kb on - strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.540 kb on + strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148at 459.541 kb on - strand, within MPMX19_04148

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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456,596 + -1.5
456,599 - +0.2
456,599 - -0.1
456,599 - -0.0
456,661 + +0.2
456,661 + -0.8
456,661 + -0.4
456,662 - +0.4
457,259 + MPMX19_04145 0.90 -0.6
457,259 + MPMX19_04145 0.90 -0.2
457,259 + MPMX19_04145 0.90 +0.8
457,259 + MPMX19_04145 0.90 +1.3
457,259 + MPMX19_04145 0.90 -0.2
457,269 - -0.5
457,328 + -0.4
457,328 + +0.6
457,328 + -1.4
457,329 - +0.6
457,329 - +2.6
457,329 - -2.5
457,329 - -0.6
457,329 - -1.1
457,329 - -0.2
457,416 + +1.2
457,417 - +0.2
457,417 - -0.1
457,553 + MPMX19_04146 0.12 -1.5
457,554 - MPMX19_04146 0.13 -0.8
457,554 - MPMX19_04146 0.13 +0.6
457,554 - MPMX19_04146 0.13 +0.0
457,554 - MPMX19_04146 0.13 -0.4
457,554 - MPMX19_04146 0.13 -0.5
458,168 + MPMX19_04146 0.63 -1.1
458,168 + MPMX19_04146 0.63 -2.2
458,168 + MPMX19_04146 0.63 -1.2
458,168 + MPMX19_04146 0.63 -1.4
458,168 + MPMX19_04146 0.63 +0.1
458,168 + MPMX19_04146 0.63 -0.7
458,168 + MPMX19_04146 0.63 -0.4
458,168 + MPMX19_04146 0.63 -1.7
458,169 - MPMX19_04146 0.63 -1.2
458,169 - MPMX19_04146 0.63 -2.0
458,169 - MPMX19_04146 0.63 +0.5
458,169 - MPMX19_04146 0.63 +0.7
458,169 - MPMX19_04146 0.63 -0.2
458,169 - MPMX19_04146 0.63 +0.4
458,169 - MPMX19_04146 0.63 -1.5
458,169 - MPMX19_04146 0.63 -0.2
458,169 - MPMX19_04146 0.63 +0.6
458,169 - MPMX19_04146 0.63 -1.5
458,169 - MPMX19_04146 0.63 -0.1
458,450 + MPMX19_04146 0.86 +0.3
458,451 - MPMX19_04146 0.86 -1.5
458,451 - MPMX19_04146 0.86 -1.4
458,451 - MPMX19_04146 0.86 +2.2
458,465 + MPMX19_04146 0.87 -0.8
458,465 + MPMX19_04146 0.87 +0.9
458,465 + MPMX19_04146 0.87 -0.4
458,465 + MPMX19_04146 0.87 +0.4
458,465 + MPMX19_04146 0.87 -1.7
458,466 - MPMX19_04146 0.88 -0.5
458,466 - MPMX19_04146 0.88 -0.9
458,466 - MPMX19_04146 0.88 +0.5
458,466 - MPMX19_04146 0.88 -1.5
458,466 - MPMX19_04146 0.88 +1.0
458,466 - MPMX19_04146 0.88 -2.0
458,483 + MPMX19_04146 0.89 +0.2
458,489 + MPMX19_04146 0.89 +1.0
458,489 + MPMX19_04146 0.89 +0.4
458,489 + MPMX19_04146 0.89 -1.1
458,489 + MPMX19_04146 0.89 -2.7
458,489 + MPMX19_04146 0.89 -2.5
458,489 + MPMX19_04146 0.89 -1.4
458,489 + MPMX19_04146 0.89 -1.8
458,490 - MPMX19_04146 0.90 -0.5
458,490 - MPMX19_04146 0.90 -0.0
458,490 - MPMX19_04146 0.90 +0.5
458,490 - MPMX19_04146 0.90 +0.6
458,490 - MPMX19_04146 0.90 -1.4
458,490 - MPMX19_04146 0.90 -0.6
459,093 + +1.0
459,129 + -1.2
459,129 + -1.7
459,129 + -0.2
459,129 + -1.0
459,129 + -0.2
459,130 - +1.8
459,130 - -0.2
459,130 - -1.1
459,130 - -0.5
459,130 - -1.2
459,130 - -0.5
459,130 - -0.7
459,130 - -0.5
459,140 + +0.6
459,140 + -0.2
459,140 + +0.3
459,140 + -0.9
459,140 + -1.5
459,141 - -0.2
459,141 - -2.4
459,141 - -0.8
459,141 - -1.6
459,141 - -0.2
459,141 - -0.5
459,141 - -1.7
459,141 - -0.8
459,141 - +0.0
459,153 + -1.2
459,153 + +0.2
459,153 + +0.0
459,153 + -0.0
459,153 + -0.5
459,154 - +1.1
459,154 - +0.8
459,201 - -1.1
459,201 - -1.7
459,375 + MPMX19_04148 0.12 +0.5
459,375 + MPMX19_04148 0.12 -0.9
459,375 + MPMX19_04148 0.12 -0.1
459,375 + MPMX19_04148 0.12 -1.4
459,375 + MPMX19_04148 0.12 +0.6
459,375 + MPMX19_04148 0.12 +1.0
459,375 + MPMX19_04148 0.12 -0.4
459,376 - MPMX19_04148 0.12 -0.4
459,376 - MPMX19_04148 0.12 +0.3
459,376 - MPMX19_04148 0.12 -0.6
459,376 - MPMX19_04148 0.12 +1.5
459,376 - MPMX19_04148 0.12 +0.4
459,376 - MPMX19_04148 0.12 +0.8
459,376 - MPMX19_04148 0.12 -0.8
459,376 - MPMX19_04148 0.12 -1.6
459,376 - MPMX19_04148 0.12 +0.5
459,376 - MPMX19_04148 0.12 +0.2
459,376 - MPMX19_04148 0.12 -1.1
459,516 + MPMX19_04148 0.22 +0.0
459,516 + MPMX19_04148 0.22 +1.2
459,516 + MPMX19_04148 0.22 -0.7
459,516 + MPMX19_04148 0.22 -1.1
459,516 + MPMX19_04148 0.22 -1.8
459,516 + MPMX19_04148 0.22 +1.6
459,517 - MPMX19_04148 0.22 +3.0
459,517 - MPMX19_04148 0.22 +0.2
459,517 - MPMX19_04148 0.22 -0.0
459,517 - MPMX19_04148 0.22 -0.3
459,540 + MPMX19_04148 0.24 -0.8
459,540 + MPMX19_04148 0.24 -0.4
459,540 + MPMX19_04148 0.24 -1.1
459,540 + MPMX19_04148 0.24 -1.4
459,540 + MPMX19_04148 0.24 -1.0
459,540 + MPMX19_04148 0.24 +0.2
459,541 - MPMX19_04148 0.24 +1.4
459,541 - MPMX19_04148 0.24 -0.2
459,541 - MPMX19_04148 0.24 -0.5
459,541 - MPMX19_04148 0.24 -1.3
459,541 - MPMX19_04148 0.24 -0.4

Or see this region's nucleotide sequence