Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04141

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04139 and MPMX19_04140 are separated by 35 nucleotidesMPMX19_04140 and MPMX19_04141 are separated by 17 nucleotidesMPMX19_04141 and MPMX19_04142 overlap by 8 nucleotidesMPMX19_04142 and MPMX19_04143 are separated by 210 nucleotides MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420 _04139 MPMX19_04140: MPMX19_04140 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 451,456 to 452,289 _04140 MPMX19_04141: MPMX19_04141 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 452,307 to 453,026 _04141 MPMX19_04142: MPMX19_04142 - hypothetical protein, at 453,019 to 453,804 _04142 MPMX19_04143: MPMX19_04143 - hypothetical protein, at 454,015 to 455,598 _04143 Position (kb) 452 453 454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.406 kb on + strandat 451.407 kb on - strandat 451.437 kb on + strandat 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.987 kb on + strand, within MPMX19_04140at 451.988 kb on - strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.326 kb on + strandat 452.326 kb on + strandat 452.326 kb on + strandat 452.327 kb on - strandat 452.327 kb on - strandat 452.328 kb on - strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.539 kb on + strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.540 kb on - strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.800 kb on + strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.801 kb on - strand, within MPMX19_04141at 452.956 kb on + strandat 452.956 kb on + strandat 452.962 kb on + strandat 452.962 kb on + strandat 452.962 kb on + strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 452.963 kb on - strandat 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.107 kb on + strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.108 kb on - strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.236 kb on + strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142at 453.237 kb on - strand, within MPMX19_04142at 453.342 kb on + strand, within MPMX19_04142at 453.342 kb on + strand, within MPMX19_04142at 453.342 kb on + strand, within MPMX19_04142at 453.342 kb on + strand, within MPMX19_04142at 453.365 kb on + strand, within MPMX19_04142at 453.365 kb on + strand, within MPMX19_04142at 453.365 kb on + strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.366 kb on - strand, within MPMX19_04142at 453.672 kb on + strand, within MPMX19_04142at 453.673 kb on - strand, within MPMX19_04142at 453.673 kb on - strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.674 kb on + strand, within MPMX19_04142at 453.675 kb on - strand, within MPMX19_04142at 453.675 kb on - strand, within MPMX19_04142at 453.675 kb on - strand, within MPMX19_04142at 453.675 kb on - strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.689 kb on + strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.690 kb on - strand, within MPMX19_04142at 453.748 kb on - strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.749 kb on + strandat 453.750 kb on + strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.750 kb on - strandat 453.858 kb on + strandat 453.859 kb on - strandat 453.859 kb on - strandat 453.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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451,402 + -0.6
451,402 + -1.7
451,402 + -0.7
451,402 + -0.8
451,402 + -2.1
451,403 - +0.6
451,403 - +1.5
451,403 - -1.8
451,403 - -1.5
451,403 - -1.9
451,403 - -1.6
451,406 + -0.7
451,407 - -1.0
451,437 + -0.4
451,759 + MPMX19_04140 0.36 -0.3
451,759 + MPMX19_04140 0.36 -0.4
451,759 + MPMX19_04140 0.36 -0.7
451,760 - MPMX19_04140 0.36 +0.3
451,760 - MPMX19_04140 0.36 -0.8
451,760 - MPMX19_04140 0.36 -1.3
451,760 - MPMX19_04140 0.36 +0.8
451,812 + MPMX19_04140 0.43 -0.4
451,812 + MPMX19_04140 0.43 -1.3
451,812 + MPMX19_04140 0.43 -0.7
451,813 - MPMX19_04140 0.43 -0.8
451,813 - MPMX19_04140 0.43 -0.8
451,813 - MPMX19_04140 0.43 -1.0
451,891 + MPMX19_04140 0.52 -0.5
451,891 + MPMX19_04140 0.52 -0.0
451,891 + MPMX19_04140 0.52 -0.5
451,892 - MPMX19_04140 0.52 -0.3
451,892 - MPMX19_04140 0.52 -0.9
451,892 - MPMX19_04140 0.52 +0.2
451,892 - MPMX19_04140 0.52 -0.5
451,892 - MPMX19_04140 0.52 -0.1
451,892 - MPMX19_04140 0.52 -1.0
451,892 - MPMX19_04140 0.52 -0.4
451,987 + MPMX19_04140 0.64 -1.8
451,988 - MPMX19_04140 0.64 -0.2
452,050 + MPMX19_04140 0.71 -0.2
452,050 + MPMX19_04140 0.71 +0.0
452,051 - MPMX19_04140 0.71 +0.3
452,051 - MPMX19_04140 0.71 -1.7
452,051 - MPMX19_04140 0.71 -2.4
452,051 - MPMX19_04140 0.71 +0.0
452,326 + +0.6
452,326 + +0.5
452,326 + -0.4
452,327 - +0.0
452,327 - -0.2
452,328 - -0.6
452,368 + -1.4
452,368 + -1.2
452,368 + -2.1
452,368 + -1.2
452,368 + -0.2
452,368 + -0.4
452,368 + -0.2
452,369 - -0.5
452,369 - -2.2
452,369 - +0.2
452,369 - -1.1
452,369 - -1.8
452,369 - -0.4
452,401 + MPMX19_04141 0.13 -1.2
452,401 + MPMX19_04141 0.13 -0.6
452,401 + MPMX19_04141 0.13 -0.2
452,401 + MPMX19_04141 0.13 +0.6
452,401 + MPMX19_04141 0.13 -1.4
452,401 + MPMX19_04141 0.13 -0.1
452,401 + MPMX19_04141 0.13 +0.6
452,401 + MPMX19_04141 0.13 -2.3
452,401 + MPMX19_04141 0.13 +0.6
452,401 + MPMX19_04141 0.13 +0.8
452,401 + MPMX19_04141 0.13 -2.0
452,401 + MPMX19_04141 0.13 -2.1
452,401 + MPMX19_04141 0.13 -1.2
452,401 + MPMX19_04141 0.13 +0.4
452,401 + MPMX19_04141 0.13 -0.2
452,401 + MPMX19_04141 0.13 -1.1
452,401 + MPMX19_04141 0.13 -1.2
452,402 - MPMX19_04141 0.13 -1.0
452,402 - MPMX19_04141 0.13 -1.3
452,402 - MPMX19_04141 0.13 -1.0
452,402 - MPMX19_04141 0.13 -0.7
452,402 - MPMX19_04141 0.13 -1.7
452,402 - MPMX19_04141 0.13 +0.7
452,402 - MPMX19_04141 0.13 +0.9
452,402 - MPMX19_04141 0.13 -0.1
452,402 - MPMX19_04141 0.13 -0.2
452,402 - MPMX19_04141 0.13 -1.1
452,402 - MPMX19_04141 0.13 -0.0
452,402 - MPMX19_04141 0.13 -1.0
452,402 - MPMX19_04141 0.13 -0.5
452,402 - MPMX19_04141 0.13 -0.3
452,402 - MPMX19_04141 0.13 -0.5
452,539 + MPMX19_04141 0.32 -0.8
452,539 + MPMX19_04141 0.32 +0.2
452,539 + MPMX19_04141 0.32 +0.3
452,540 - MPMX19_04141 0.32 -2.0
452,540 - MPMX19_04141 0.32 -2.3
452,540 - MPMX19_04141 0.32 -1.0
452,800 + MPMX19_04141 0.68 -1.0
452,800 + MPMX19_04141 0.68 +0.1
452,800 + MPMX19_04141 0.68 +0.8
452,801 - MPMX19_04141 0.69 -0.4
452,801 - MPMX19_04141 0.69 +0.8
452,801 - MPMX19_04141 0.69 +0.4
452,801 - MPMX19_04141 0.69 -1.8
452,801 - MPMX19_04141 0.69 +1.8
452,956 + -0.5
452,956 + +0.5
452,962 + -0.2
452,962 + -0.1
452,962 + -0.2
452,963 - -2.6
452,963 - +0.4
452,963 - -0.5
452,963 - +0.1
452,963 - -0.6
452,963 - -1.2
453,107 + MPMX19_04142 0.11 +0.9
453,107 + MPMX19_04142 0.11 -0.5
453,107 + MPMX19_04142 0.11 -1.4
453,107 + MPMX19_04142 0.11 -1.5
453,107 + MPMX19_04142 0.11 -1.2
453,107 + MPMX19_04142 0.11 -0.2
453,107 + MPMX19_04142 0.11 +0.3
453,108 - MPMX19_04142 0.11 +1.3
453,108 - MPMX19_04142 0.11 -0.3
453,108 - MPMX19_04142 0.11 +1.4
453,108 - MPMX19_04142 0.11 -1.5
453,236 + MPMX19_04142 0.28 -0.5
453,236 + MPMX19_04142 0.28 +1.0
453,236 + MPMX19_04142 0.28 -0.2
453,237 - MPMX19_04142 0.28 -0.3
453,237 - MPMX19_04142 0.28 -0.8
453,237 - MPMX19_04142 0.28 -1.9
453,342 + MPMX19_04142 0.41 -0.8
453,342 + MPMX19_04142 0.41 +0.2
453,342 + MPMX19_04142 0.41 +0.3
453,342 + MPMX19_04142 0.41 -1.4
453,365 + MPMX19_04142 0.44 -0.1
453,365 + MPMX19_04142 0.44 +0.1
453,365 + MPMX19_04142 0.44 +0.4
453,366 - MPMX19_04142 0.44 +0.5
453,366 - MPMX19_04142 0.44 -0.4
453,366 - MPMX19_04142 0.44 -1.1
453,366 - MPMX19_04142 0.44 -0.5
453,366 - MPMX19_04142 0.44 +0.9
453,366 - MPMX19_04142 0.44 -0.2
453,366 - MPMX19_04142 0.44 -1.4
453,672 + MPMX19_04142 0.83 -1.4
453,673 - MPMX19_04142 0.83 -0.4
453,673 - MPMX19_04142 0.83 -1.9
453,674 + MPMX19_04142 0.83 +0.4
453,674 + MPMX19_04142 0.83 +0.3
453,674 + MPMX19_04142 0.83 +0.9
453,674 + MPMX19_04142 0.83 -0.4
453,674 + MPMX19_04142 0.83 -1.5
453,674 + MPMX19_04142 0.83 +0.6
453,674 + MPMX19_04142 0.83 +0.6
453,675 - MPMX19_04142 0.83 -0.6
453,675 - MPMX19_04142 0.83 +0.6
453,675 - MPMX19_04142 0.83 +0.1
453,675 - MPMX19_04142 0.83 -1.5
453,689 + MPMX19_04142 0.85 +1.6
453,689 + MPMX19_04142 0.85 -0.2
453,689 + MPMX19_04142 0.85 +1.1
453,689 + MPMX19_04142 0.85 +0.8
453,689 + MPMX19_04142 0.85 -1.5
453,689 + MPMX19_04142 0.85 +0.3
453,689 + MPMX19_04142 0.85 -0.3
453,689 + MPMX19_04142 0.85 +0.8
453,689 + MPMX19_04142 0.85 -1.4
453,690 - MPMX19_04142 0.85 -0.2
453,690 - MPMX19_04142 0.85 -0.8
453,690 - MPMX19_04142 0.85 -1.0
453,690 - MPMX19_04142 0.85 -1.2
453,690 - MPMX19_04142 0.85 -0.8
453,690 - MPMX19_04142 0.85 -1.4
453,690 - MPMX19_04142 0.85 +1.0
453,690 - MPMX19_04142 0.85 +0.2
453,690 - MPMX19_04142 0.85 -0.8
453,748 - +0.8
453,749 + -0.1
453,749 + -1.3
453,749 + -1.2
453,749 + +0.6
453,749 + +0.4
453,749 + -0.5
453,749 + -0.2
453,749 + +0.7
453,749 + +1.1
453,749 + -0.1
453,749 + -1.0
453,749 + +1.4
453,749 + -1.5
453,750 + +1.8
453,750 - -0.5
453,750 - -0.2
453,750 - +0.2
453,750 - -1.5
453,750 - +0.8
453,750 - +0.2
453,750 - -1.0
453,750 - -0.6
453,858 + -2.2
453,859 - +2.8
453,859 - -0.7
453,859 - -1.5

Or see this region's nucleotide sequence