Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04116 and MPMX19_04117 overlap by 4 nucleotides MPMX19_04117 and MPMX19_04118 are separated by 95 nucleotides MPMX19_04118 and MPMX19_04119 are separated by 27 nucleotides MPMX19_04119 and MPMX19_04120 overlap by 14 nucleotides MPMX19_04120 and MPMX19_04121 are separated by 19 nucleotides
MPMX19_04116: MPMX19_04116 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 425,035 to 426,210
_04116
MPMX19_04117: MPMX19_04117 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 426,207 to 426,974
_04117
MPMX19_04118: MPMX19_04118 - Sensor histidine kinase RcsC, at 427,070 to 428,731
_04118
MPMX19_04119: MPMX19_04119 - hypothetical protein, at 428,759 to 429,166
_04119
MPMX19_04120: MPMX19_04120 - hypothetical protein, at 429,153 to 429,542
_04120
MPMX19_04121: MPMX19_04121 - Putative aminopeptidase YsdC, at 429,562 to 430,620
_04121
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.084 kb on + strand, within MPMX19_04116 at 426.922 kb on - strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.972 kb on + strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.973 kb on - strand at 426.984 kb on - strand at 427.023 kb on - strand at 427.400 kb on + strand, within MPMX19_04118 at 427.400 kb on + strand, within MPMX19_04118 at 427.994 kb on + strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 428.865 kb on + strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.925 kb on + strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.166 kb on + strand at 429.274 kb on + strand, within MPMX19_04120 at 429.274 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.528 kb on + strand at 429.528 kb on + strand at 429.528 kb on + strand at 429.529 kb on - strand at 429.529 kb on - strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.599 kb on - strand at 429.641 kb on + strand at 429.641 kb on + strand at 429.728 kb on + strand, within MPMX19_04121 at 429.728 kb on + strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 426,084 + MPMX19_04116 0.89 +0.5 426,084 + MPMX19_04116 0.89 -0.0 426,084 + MPMX19_04116 0.89 +2.1 426,922 - +0.0 426,972 + -1.4 426,972 + +0.4 426,972 + -0.2 426,972 + +1.0 426,973 - -0.0 426,973 - +0.8 426,973 - +1.8 426,973 - -0.8 426,984 - +1.0 427,023 - -0.6 427,400 + MPMX19_04118 0.20 +0.1 427,400 + MPMX19_04118 0.20 -1.4 427,994 + MPMX19_04118 0.56 -1.2 427,995 - MPMX19_04118 0.56 -1.0 427,995 - MPMX19_04118 0.56 -0.3 427,995 - MPMX19_04118 0.56 -1.7 428,865 + MPMX19_04119 0.26 -1.5 428,866 - MPMX19_04119 0.26 +1.0 428,866 - MPMX19_04119 0.26 +0.3 428,925 + MPMX19_04119 0.41 +0.3 428,926 - MPMX19_04119 0.41 -2.0 428,926 - MPMX19_04119 0.41 +1.1 429,039 + MPMX19_04119 0.69 -2.0 429,039 + MPMX19_04119 0.69 -1.7 429,039 + MPMX19_04119 0.69 -1.8 429,040 - MPMX19_04119 0.69 -1.7 429,040 - MPMX19_04119 0.69 +0.1 429,040 - MPMX19_04119 0.69 -1.4 429,166 + +0.8 429,274 + MPMX19_04120 0.31 -1.3 429,274 + MPMX19_04120 0.31 -0.5 429,292 + MPMX19_04120 0.36 +0.2 429,292 + MPMX19_04120 0.36 -1.5 429,326 + MPMX19_04120 0.44 +1.2 429,326 + MPMX19_04120 0.44 +1.2 429,355 + MPMX19_04120 0.52 +0.8 429,355 + MPMX19_04120 0.52 +0.6 429,355 + MPMX19_04120 0.52 -1.2 429,355 + MPMX19_04120 0.52 -0.4 429,355 + MPMX19_04120 0.52 +0.3 429,500 + MPMX19_04120 0.89 -0.6 429,500 + MPMX19_04120 0.89 -0.1 429,528 + -0.8 429,528 + +1.8 429,528 + -0.4 429,529 - +0.1 429,529 - -0.3 429,587 + +0.4 429,587 + +0.2 429,587 + -0.1 429,588 - -1.1 429,588 - -1.1 429,588 - -0.0 429,588 - -0.4 429,588 - -0.9 429,588 - -0.1 429,599 - +0.5 429,641 + +1.0 429,641 + +1.0 429,728 + MPMX19_04121 0.16 -0.5 429,728 + MPMX19_04121 0.16 -0.6 429,729 - MPMX19_04121 0.16 -1.0 429,729 - MPMX19_04121 0.16 -1.1 429,731 + MPMX19_04121 0.16 -0.8 429,731 + MPMX19_04121 0.16 -0.7 429,731 + MPMX19_04121 0.16 -0.2
Or see this region's nucleotide sequence