Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04064

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04063 and MPMX19_04064 are separated by 33 nucleotidesMPMX19_04064 and MPMX19_04065 are separated by 8 nucleotides MPMX19_04063: MPMX19_04063 - scyllo-inositol 2-dehydrogenase (NADP(+)) IolW, at 367,664 to 368,680 _04063 MPMX19_04064: MPMX19_04064 - hypothetical protein, at 368,714 to 370,516 _04064 MPMX19_04065: MPMX19_04065 - Fe(3+)-binding periplasmic protein, at 370,525 to 371,511 _04065 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 368.093 kb on + strand, within MPMX19_04063at 368.099 kb on + strand, within MPMX19_04063at 368.099 kb on + strand, within MPMX19_04063at 368.099 kb on + strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.100 kb on - strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.111 kb on + strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.112 kb on - strand, within MPMX19_04063at 368.309 kb on + strand, within MPMX19_04063at 368.310 kb on - strand, within MPMX19_04063at 368.549 kb on + strand, within MPMX19_04063at 368.549 kb on + strand, within MPMX19_04063at 368.550 kb on - strand, within MPMX19_04063at 368.550 kb on - strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.561 kb on + strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.562 kb on - strand, within MPMX19_04063at 368.701 kb on + strandat 368.702 kb on - strandat 368.702 kb on - strandat 368.853 kb on + strandat 368.853 kb on + strandat 368.853 kb on + strandat 368.853 kb on + strandat 368.854 kb on - strandat 368.854 kb on - strandat 369.105 kb on + strand, within MPMX19_04064at 369.105 kb on + strand, within MPMX19_04064at 369.105 kb on + strand, within MPMX19_04064at 369.106 kb on - strand, within MPMX19_04064at 369.106 kb on - strand, within MPMX19_04064at 369.106 kb on - strand, within MPMX19_04064at 369.106 kb on - strand, within MPMX19_04064at 369.135 kb on + strand, within MPMX19_04064at 369.135 kb on + strand, within MPMX19_04064at 369.135 kb on + strand, within MPMX19_04064at 369.136 kb on - strand, within MPMX19_04064at 369.136 kb on - strand, within MPMX19_04064at 369.136 kb on - strand, within MPMX19_04064at 369.393 kb on + strand, within MPMX19_04064at 369.412 kb on + strand, within MPMX19_04064at 369.412 kb on + strand, within MPMX19_04064at 369.435 kb on + strand, within MPMX19_04064at 369.435 kb on + strand, within MPMX19_04064at 369.435 kb on + strand, within MPMX19_04064at 369.435 kb on + strand, within MPMX19_04064at 369.435 kb on + strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.436 kb on - strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.705 kb on + strand, within MPMX19_04064at 369.706 kb on - strand, within MPMX19_04064at 369.728 kb on + strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 369.729 kb on - strand, within MPMX19_04064at 370.259 kb on + strand, within MPMX19_04064at 370.260 kb on - strand, within MPMX19_04064at 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.507 kb on + strandat 370.595 kb on + strandat 370.595 kb on + strandat 370.595 kb on + strandat 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.850 kb on + strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.851 kb on - strand, within MPMX19_04065at 370.868 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.952 kb on + strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.953 kb on - strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.955 kb on + strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 370.956 kb on - strand, within MPMX19_04065at 371.018 kb on + strand, within MPMX19_04065at 371.019 kb on - strand, within MPMX19_04065at 371.019 kb on - strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.108 kb on + strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.109 kb on - strand, within MPMX19_04065at 371.147 kb on + strand, within MPMX19_04065at 371.147 kb on + strand, within MPMX19_04065at 371.148 kb on - strand, within MPMX19_04065at 371.201 kb on + strand, within MPMX19_04065at 371.201 kb on + strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.202 kb on - strand, within MPMX19_04065at 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.417 kb on + strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strandat 371.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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368,093 + MPMX19_04063 0.42 -0.8
368,099 + MPMX19_04063 0.43 -0.4
368,099 + MPMX19_04063 0.43 -0.5
368,099 + MPMX19_04063 0.43 +1.4
368,100 - MPMX19_04063 0.43 -1.9
368,100 - MPMX19_04063 0.43 -0.3
368,100 - MPMX19_04063 0.43 +0.3
368,100 - MPMX19_04063 0.43 -0.3
368,100 - MPMX19_04063 0.43 +0.2
368,100 - MPMX19_04063 0.43 -0.1
368,100 - MPMX19_04063 0.43 -0.5
368,100 - MPMX19_04063 0.43 -0.9
368,100 - MPMX19_04063 0.43 -1.2
368,100 - MPMX19_04063 0.43 +0.8
368,111 + MPMX19_04063 0.44 -0.1
368,111 + MPMX19_04063 0.44 -0.8
368,111 + MPMX19_04063 0.44 +0.6
368,111 + MPMX19_04063 0.44 -0.1
368,111 + MPMX19_04063 0.44 +0.1
368,111 + MPMX19_04063 0.44 -0.4
368,111 + MPMX19_04063 0.44 -1.1
368,112 - MPMX19_04063 0.44 +1.2
368,112 - MPMX19_04063 0.44 +1.0
368,112 - MPMX19_04063 0.44 +1.4
368,112 - MPMX19_04063 0.44 -0.2
368,112 - MPMX19_04063 0.44 -1.0
368,112 - MPMX19_04063 0.44 +0.9
368,112 - MPMX19_04063 0.44 +1.8
368,309 + MPMX19_04063 0.63 -0.4
368,310 - MPMX19_04063 0.64 +0.7
368,549 + MPMX19_04063 0.87 -0.5
368,549 + MPMX19_04063 0.87 -0.9
368,550 - MPMX19_04063 0.87 +1.4
368,550 - MPMX19_04063 0.87 -3.0
368,561 + MPMX19_04063 0.88 -0.9
368,561 + MPMX19_04063 0.88 +0.6
368,561 + MPMX19_04063 0.88 -1.7
368,561 + MPMX19_04063 0.88 -1.4
368,561 + MPMX19_04063 0.88 -0.1
368,561 + MPMX19_04063 0.88 +0.2
368,561 + MPMX19_04063 0.88 -1.5
368,561 + MPMX19_04063 0.88 +0.6
368,562 - MPMX19_04063 0.88 +2.0
368,562 - MPMX19_04063 0.88 +0.8
368,562 - MPMX19_04063 0.88 +0.4
368,562 - MPMX19_04063 0.88 -1.5
368,562 - MPMX19_04063 0.88 -1.1
368,562 - MPMX19_04063 0.88 +0.8
368,562 - MPMX19_04063 0.88 -2.1
368,562 - MPMX19_04063 0.88 -0.4
368,562 - MPMX19_04063 0.88 -1.0
368,701 + -0.4
368,702 - -0.1
368,702 - -0.6
368,853 + +1.1
368,853 + -2.0
368,853 + +0.6
368,853 + +1.1
368,854 - +1.1
368,854 - -1.2
369,105 + MPMX19_04064 0.22 +0.7
369,105 + MPMX19_04064 0.22 +1.2
369,105 + MPMX19_04064 0.22 +0.8
369,106 - MPMX19_04064 0.22 +0.6
369,106 - MPMX19_04064 0.22 +1.2
369,106 - MPMX19_04064 0.22 -0.0
369,106 - MPMX19_04064 0.22 -0.7
369,135 + MPMX19_04064 0.23 -0.5
369,135 + MPMX19_04064 0.23 +2.0
369,135 + MPMX19_04064 0.23 +0.5
369,136 - MPMX19_04064 0.23 +0.7
369,136 - MPMX19_04064 0.23 -1.1
369,136 - MPMX19_04064 0.23 -0.2
369,393 + MPMX19_04064 0.38 -0.8
369,412 + MPMX19_04064 0.39 -0.5
369,412 + MPMX19_04064 0.39 +0.7
369,435 + MPMX19_04064 0.40 -0.1
369,435 + MPMX19_04064 0.40 +0.6
369,435 + MPMX19_04064 0.40 +0.5
369,435 + MPMX19_04064 0.40 -0.3
369,435 + MPMX19_04064 0.40 -0.4
369,436 - MPMX19_04064 0.40 -1.0
369,436 - MPMX19_04064 0.40 +1.1
369,436 - MPMX19_04064 0.40 +0.3
369,436 - MPMX19_04064 0.40 -0.1
369,436 - MPMX19_04064 0.40 +0.8
369,436 - MPMX19_04064 0.40 -0.5
369,436 - MPMX19_04064 0.40 +0.1
369,705 + MPMX19_04064 0.55 -0.4
369,705 + MPMX19_04064 0.55 -0.3
369,705 + MPMX19_04064 0.55 +0.1
369,705 + MPMX19_04064 0.55 -0.5
369,706 - MPMX19_04064 0.55 -0.9
369,728 + MPMX19_04064 0.56 +0.5
369,729 - MPMX19_04064 0.56 +0.4
369,729 - MPMX19_04064 0.56 -0.8
369,729 - MPMX19_04064 0.56 +1.5
370,259 + MPMX19_04064 0.86 -0.5
370,260 - MPMX19_04064 0.86 -0.5
370,507 + +0.3
370,507 + +1.1
370,507 + -0.5
370,507 + +1.2
370,507 + -1.2
370,507 + -0.3
370,507 + -0.6
370,595 + +1.5
370,595 + -1.4
370,595 + -0.2
370,850 + MPMX19_04065 0.33 +1.8
370,850 + MPMX19_04065 0.33 -1.3
370,850 + MPMX19_04065 0.33 +0.8
370,850 + MPMX19_04065 0.33 -0.6
370,851 - MPMX19_04065 0.33 -2.2
370,851 - MPMX19_04065 0.33 -0.1
370,851 - MPMX19_04065 0.33 -0.4
370,851 - MPMX19_04065 0.33 -0.2
370,851 - MPMX19_04065 0.33 -0.1
370,868 + MPMX19_04065 0.35 +0.9
370,952 + MPMX19_04065 0.43 +0.8
370,952 + MPMX19_04065 0.43 -0.1
370,952 + MPMX19_04065 0.43 -0.8
370,952 + MPMX19_04065 0.43 -0.8
370,952 + MPMX19_04065 0.43 -1.0
370,952 + MPMX19_04065 0.43 -1.4
370,953 - MPMX19_04065 0.43 -0.2
370,953 - MPMX19_04065 0.43 +0.8
370,953 - MPMX19_04065 0.43 -1.1
370,953 - MPMX19_04065 0.43 +0.0
370,953 - MPMX19_04065 0.43 +0.2
370,953 - MPMX19_04065 0.43 -0.1
370,953 - MPMX19_04065 0.43 -0.8
370,953 - MPMX19_04065 0.43 +0.7
370,955 + MPMX19_04065 0.44 -0.1
370,955 + MPMX19_04065 0.44 -0.2
370,955 + MPMX19_04065 0.44 +1.8
370,955 + MPMX19_04065 0.44 -1.0
370,955 + MPMX19_04065 0.44 -1.4
370,956 - MPMX19_04065 0.44 -0.4
370,956 - MPMX19_04065 0.44 +0.1
370,956 - MPMX19_04065 0.44 +0.8
370,956 - MPMX19_04065 0.44 +1.1
370,956 - MPMX19_04065 0.44 +1.0
370,956 - MPMX19_04065 0.44 -0.8
370,956 - MPMX19_04065 0.44 -1.4
370,956 - MPMX19_04065 0.44 +0.9
371,018 + MPMX19_04065 0.50 -0.8
371,019 - MPMX19_04065 0.50 +0.7
371,019 - MPMX19_04065 0.50 +0.8
371,108 + MPMX19_04065 0.59 -0.6
371,108 + MPMX19_04065 0.59 -2.5
371,108 + MPMX19_04065 0.59 -0.6
371,108 + MPMX19_04065 0.59 -0.1
371,108 + MPMX19_04065 0.59 -0.5
371,108 + MPMX19_04065 0.59 +0.9
371,108 + MPMX19_04065 0.59 -0.1
371,108 + MPMX19_04065 0.59 -1.9
371,108 + MPMX19_04065 0.59 +0.4
371,108 + MPMX19_04065 0.59 -1.1
371,109 - MPMX19_04065 0.59 -0.2
371,109 - MPMX19_04065 0.59 +0.2
371,109 - MPMX19_04065 0.59 -1.0
371,109 - MPMX19_04065 0.59 -0.3
371,109 - MPMX19_04065 0.59 -0.3
371,109 - MPMX19_04065 0.59 -0.2
371,109 - MPMX19_04065 0.59 +1.5
371,109 - MPMX19_04065 0.59 +1.8
371,109 - MPMX19_04065 0.59 +0.2
371,109 - MPMX19_04065 0.59 -1.7
371,147 + MPMX19_04065 0.63 -0.7
371,147 + MPMX19_04065 0.63 -1.1
371,148 - MPMX19_04065 0.63 -0.5
371,201 + MPMX19_04065 0.68 +0.6
371,201 + MPMX19_04065 0.68 -0.2
371,202 - MPMX19_04065 0.69 -1.5
371,202 - MPMX19_04065 0.69 -0.1
371,202 - MPMX19_04065 0.69 +0.2
371,202 - MPMX19_04065 0.69 +0.2
371,202 - MPMX19_04065 0.69 -1.9
371,202 - MPMX19_04065 0.69 -2.2
371,417 + +0.6
371,417 + +0.3
371,417 + -1.5
371,417 + -0.1
371,417 + -0.6
371,417 + +1.8
371,417 + -0.8
371,417 + +1.2
371,418 - -0.0
371,418 - +0.3
371,418 - -0.2
371,418 - +0.1
371,418 - +0.8
371,418 - +0.2
371,418 - +1.8
371,418 - -2.7

Or see this region's nucleotide sequence