Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04028 and MPMX19_04029 are separated by 150 nucleotides MPMX19_04029 and MPMX19_04030 are separated by 103 nucleotides
MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738
_04028
MPMX19_04029: MPMX19_04029 - Glycine cleavage system transcriptional activator, at 324,889 to 325,812
_04029
MPMX19_04030: MPMX19_04030 - hypothetical protein, at 325,916 to 327,349
_04030
Position (kb)
324
325
326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 323.969 kb on + strand, within MPMX19_04028 at 323.969 kb on + strand, within MPMX19_04028 at 323.970 kb on - strand, within MPMX19_04028 at 324.020 kb on + strand, within MPMX19_04028 at 324.020 kb on + strand, within MPMX19_04028 at 324.020 kb on + strand, within MPMX19_04028 at 324.021 kb on - strand, within MPMX19_04028 at 324.176 kb on + strand, within MPMX19_04028 at 324.176 kb on + strand, within MPMX19_04028 at 324.176 kb on + strand, within MPMX19_04028 at 324.176 kb on + strand, within MPMX19_04028 at 324.176 kb on + strand, within MPMX19_04028 at 324.177 kb on - strand, within MPMX19_04028 at 324.177 kb on - strand, within MPMX19_04028 at 324.177 kb on - strand, within MPMX19_04028 at 324.177 kb on - strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.227 kb on + strand, within MPMX19_04028 at 324.228 kb on - strand, within MPMX19_04028 at 324.228 kb on - strand, within MPMX19_04028 at 324.228 kb on - strand, within MPMX19_04028 at 324.228 kb on - strand, within MPMX19_04028 at 324.458 kb on + strand, within MPMX19_04028 at 324.458 kb on + strand, within MPMX19_04028 at 324.458 kb on + strand, within MPMX19_04028 at 324.458 kb on + strand, within MPMX19_04028 at 324.459 kb on - strand, within MPMX19_04028 at 324.623 kb on + strand at 324.623 kb on + strand at 324.624 kb on - strand at 324.805 kb on + strand at 325.099 kb on + strand, within MPMX19_04029 at 325.099 kb on + strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.100 kb on - strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.102 kb on + strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.103 kb on - strand, within MPMX19_04029 at 325.171 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.693 kb on + strand, within MPMX19_04029 at 325.694 kb on - strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.696 kb on + strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.697 kb on - strand, within MPMX19_04029 at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.855 kb on + strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.856 kb on - strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.857 kb on + strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 325.858 kb on - strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.030 kb on + strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.031 kb on - strand at 326.051 kb on + strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.052 kb on - strand at 326.253 kb on - strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.255 kb on + strand, within MPMX19_04030 at 326.256 kb on - strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.567 kb on + strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030 at 326.568 kb on - strand, within MPMX19_04030
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 323,969 + MPMX19_04028 0.41 +1.5 323,969 + MPMX19_04028 0.41 +0.2 323,970 - MPMX19_04028 0.41 +0.3 324,020 + MPMX19_04028 0.45 -1.7 324,020 + MPMX19_04028 0.45 -0.3 324,020 + MPMX19_04028 0.45 -0.4 324,021 - MPMX19_04028 0.45 -0.3 324,176 + MPMX19_04028 0.57 +0.6 324,176 + MPMX19_04028 0.57 +0.4 324,176 + MPMX19_04028 0.57 -0.5 324,176 + MPMX19_04028 0.57 +0.8 324,176 + MPMX19_04028 0.57 -0.5 324,177 - MPMX19_04028 0.57 -0.0 324,177 - MPMX19_04028 0.57 -0.1 324,177 - MPMX19_04028 0.57 -0.9 324,177 - MPMX19_04028 0.57 +0.1 324,227 + MPMX19_04028 0.60 -2.4 324,227 + MPMX19_04028 0.60 -1.7 324,227 + MPMX19_04028 0.60 +0.5 324,227 + MPMX19_04028 0.60 -0.7 324,227 + MPMX19_04028 0.60 -0.3 324,227 + MPMX19_04028 0.60 +0.2 324,227 + MPMX19_04028 0.60 -0.4 324,227 + MPMX19_04028 0.60 +0.1 324,227 + MPMX19_04028 0.60 -0.8 324,227 + MPMX19_04028 0.60 +0.2 324,227 + MPMX19_04028 0.60 -1.0 324,228 - MPMX19_04028 0.61 -0.1 324,228 - MPMX19_04028 0.61 -0.4 324,228 - MPMX19_04028 0.61 -1.1 324,228 - MPMX19_04028 0.61 -0.5 324,458 + MPMX19_04028 0.78 -0.9 324,458 + MPMX19_04028 0.78 -0.8 324,458 + MPMX19_04028 0.78 -1.5 324,458 + MPMX19_04028 0.78 -0.3 324,459 - MPMX19_04028 0.78 -2.8 324,623 + -2.1 324,623 + -0.1 324,624 - +0.3 324,805 + -0.7 325,099 + MPMX19_04029 0.23 +1.2 325,099 + MPMX19_04029 0.23 +1.0 325,100 - MPMX19_04029 0.23 +0.6 325,100 - MPMX19_04029 0.23 -1.1 325,102 + MPMX19_04029 0.23 +0.1 325,102 + MPMX19_04029 0.23 -0.4 325,102 + MPMX19_04029 0.23 +1.1 325,102 + MPMX19_04029 0.23 -0.2 325,102 + MPMX19_04029 0.23 +1.0 325,102 + MPMX19_04029 0.23 +0.2 325,102 + MPMX19_04029 0.23 -1.2 325,102 + MPMX19_04029 0.23 -1.3 325,102 + MPMX19_04029 0.23 -0.7 325,102 + MPMX19_04029 0.23 +0.4 325,102 + MPMX19_04029 0.23 -0.2 325,103 - MPMX19_04029 0.23 -1.8 325,103 - MPMX19_04029 0.23 +1.0 325,103 - MPMX19_04029 0.23 -0.3 325,103 - MPMX19_04029 0.23 -1.2 325,103 - MPMX19_04029 0.23 -0.4 325,103 - MPMX19_04029 0.23 +0.3 325,103 - MPMX19_04029 0.23 +2.1 325,103 - MPMX19_04029 0.23 -0.4 325,171 + MPMX19_04029 0.31 -1.4 325,693 + MPMX19_04029 0.87 -0.7 325,693 + MPMX19_04029 0.87 +0.5 325,693 + MPMX19_04029 0.87 +0.2 325,693 + MPMX19_04029 0.87 -1.1 325,693 + MPMX19_04029 0.87 -0.5 325,693 + MPMX19_04029 0.87 +0.7 325,693 + MPMX19_04029 0.87 +0.8 325,694 - MPMX19_04029 0.87 -1.5 325,696 + MPMX19_04029 0.87 -1.4 325,696 + MPMX19_04029 0.87 +0.8 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 -2.4 325,696 + MPMX19_04029 0.87 +1.5 325,696 + MPMX19_04029 0.87 -0.1 325,696 + MPMX19_04029 0.87 +0.1 325,696 + MPMX19_04029 0.87 -0.1 325,696 + MPMX19_04029 0.87 -0.8 325,697 - MPMX19_04029 0.87 -1.0 325,697 - MPMX19_04029 0.87 +0.5 325,697 - MPMX19_04029 0.87 +0.8 325,697 - MPMX19_04029 0.87 -0.0 325,697 - MPMX19_04029 0.87 -0.1 325,697 - MPMX19_04029 0.87 -1.4 325,697 - MPMX19_04029 0.87 -2.6 325,697 - MPMX19_04029 0.87 -0.8 325,855 + -2.2 325,855 + -1.7 325,855 + -0.2 325,855 + -0.2 325,855 + -0.3 325,856 - -0.8 325,856 - +0.4 325,856 - -0.7 325,856 - -1.4 325,856 - +0.6 325,857 + -1.0 325,857 + -0.9 325,857 + -0.6 325,857 + +0.5 325,857 + -1.7 325,857 + -1.4 325,858 - -0.1 325,858 - -1.4 325,858 - -0.3 325,858 - -0.5 325,858 - -0.9 325,858 - -1.3 325,858 - +0.2 325,858 - -0.9 325,858 - -1.5 325,858 - -0.5 325,858 - +1.0 326,030 + -1.8 326,030 + -2.8 326,030 + -0.0 326,030 + +0.6 326,030 + +1.3 326,030 + -1.2 326,030 + +1.0 326,030 + +0.2 326,030 + +2.1 326,030 + +0.6 326,030 + -0.0 326,030 + -0.2 326,031 - -0.8 326,031 - +0.1 326,031 - -0.0 326,031 - -1.3 326,031 - -1.0 326,031 - +0.8 326,031 - -0.5 326,031 - -0.1 326,031 - +1.0 326,031 - -1.0 326,031 - -0.8 326,031 - +1.5 326,031 - -0.9 326,051 + -0.3 326,052 - -0.3 326,052 - -0.4 326,052 - -0.9 326,253 - MPMX19_04030 0.24 -1.4 326,255 + MPMX19_04030 0.24 +0.0 326,255 + MPMX19_04030 0.24 -1.0 326,255 + MPMX19_04030 0.24 +1.4 326,255 + MPMX19_04030 0.24 +1.4 326,256 - MPMX19_04030 0.24 -1.0 326,567 + MPMX19_04030 0.45 -0.3 326,567 + MPMX19_04030 0.45 -0.8 326,567 + MPMX19_04030 0.45 -1.4 326,568 - MPMX19_04030 0.45 +1.6 326,568 - MPMX19_04030 0.45 -0.1 326,568 - MPMX19_04030 0.45 -1.2 326,568 - MPMX19_04030 0.45 +1.2 326,568 - MPMX19_04030 0.45 -1.8 326,568 - MPMX19_04030 0.45 +0.3
Or see this region's nucleotide sequence