Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04009

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04008 and MPMX19_04009 overlap by 4 nucleotidesMPMX19_04009 and MPMX19_04010 are separated by 11 nucleotides MPMX19_04008: MPMX19_04008 - Beta-peptidyl aminopeptidase BapA, at 304,479 to 305,588 _04008 MPMX19_04009: MPMX19_04009 - D-aminopeptidase, at 305,585 to 306,418 _04009 MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401 _04010 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2at 304.686 kb on + strand, within MPMX19_04008at 304.687 kb on - strand, within MPMX19_04008at 305.396 kb on + strand, within MPMX19_04008at 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.563 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.594 kb on + strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.595 kb on - strandat 305.666 kb on + strandat 305.667 kb on - strandat 305.667 kb on - strandat 305.912 kb on + strand, within MPMX19_04009at 305.912 kb on + strand, within MPMX19_04009at 305.913 kb on - strand, within MPMX19_04009at 305.996 kb on + strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 305.997 kb on - strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.005 kb on + strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.006 kb on - strand, within MPMX19_04009at 306.871 kb on + strand, within MPMX19_04010at 306.871 kb on + strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 306.872 kb on - strand, within MPMX19_04010at 307.330 kb on + strandat 307.331 kb on - strandat 307.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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304,686 + MPMX19_04008 0.19 -0.7
304,687 - MPMX19_04008 0.19 -2.4
305,396 + MPMX19_04008 0.83 -0.2
305,563 + -0.0
305,563 + -0.0
305,563 + -0.4
305,563 + +0.8
305,594 + +0.8
305,594 + -0.1
305,594 + -0.3
305,594 + -0.1
305,594 + -1.0
305,594 + -0.4
305,594 + -0.6
305,594 + +0.2
305,594 + -0.4
305,594 + -1.0
305,594 + -0.3
305,594 + -0.2
305,594 + -2.1
305,594 + -0.2
305,594 + -0.5
305,595 - +0.0
305,595 - +0.1
305,595 - -0.1
305,595 - -1.4
305,595 - +0.2
305,666 + -0.7
305,667 - +0.8
305,667 - -1.0
305,912 + MPMX19_04009 0.39 +1.3
305,912 + MPMX19_04009 0.39 +0.6
305,913 - MPMX19_04009 0.39 +0.3
305,996 + MPMX19_04009 0.49 -1.1
305,997 - MPMX19_04009 0.49 -0.4
305,997 - MPMX19_04009 0.49 +1.8
305,997 - MPMX19_04009 0.49 -0.2
305,997 - MPMX19_04009 0.49 -0.5
306,005 + MPMX19_04009 0.50 -1.7
306,005 + MPMX19_04009 0.50 -0.6
306,005 + MPMX19_04009 0.50 -0.3
306,005 + MPMX19_04009 0.50 +0.7
306,005 + MPMX19_04009 0.50 +0.3
306,005 + MPMX19_04009 0.50 -0.6
306,005 + MPMX19_04009 0.50 -1.5
306,005 + MPMX19_04009 0.50 +0.6
306,006 - MPMX19_04009 0.50 +0.1
306,006 - MPMX19_04009 0.50 -1.2
306,006 - MPMX19_04009 0.50 -0.1
306,871 + MPMX19_04010 0.45 +0.3
306,871 + MPMX19_04010 0.45 -0.6
306,872 - MPMX19_04010 0.45 -1.8
306,872 - MPMX19_04010 0.45 -1.3
306,872 - MPMX19_04010 0.45 +0.8
306,872 - MPMX19_04010 0.45 -2.0
307,330 + -0.0
307,331 - -0.3
307,331 - +0.6

Or see this region's nucleotide sequence