Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03974 and MPMX19_03975 are separated by 207 nucleotides MPMX19_03975 and MPMX19_03976 are separated by 269 nucleotides MPMX19_03976 and MPMX19_03977 are separated by 149 nucleotides
MPMX19_03974: MPMX19_03974 - putative lipid II flippase MurJ, at 264,203 to 265,753
_03974
MPMX19_03975: MPMX19_03975 - Putative thiosulfate sulfurtransferase, at 265,961 to 266,803
_03975
MPMX19_03976: MPMX19_03976 - hypothetical protein, at 267,073 to 267,375
_03976
MPMX19_03977: MPMX19_03977 - Diaminopropionate ammonia-lyase, at 267,525 to 268,778
_03977
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.986 kb on + strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.987 kb on - strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.992 kb on + strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.993 kb on - strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.995 kb on + strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 264.996 kb on - strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.265 kb on + strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.266 kb on - strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.319 kb on + strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.320 kb on - strand, within MPMX19_03974 at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.673 kb on + strand at 265.674 kb on - strand at 265.674 kb on - strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.751 kb on + strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.752 kb on - strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.830 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.949 kb on + strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 265.950 kb on - strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.022 kb on + strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.023 kb on - strand at 266.499 kb on + strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.500 kb on - strand, within MPMX19_03975 at 266.552 kb on + strand, within MPMX19_03975 at 266.553 kb on - strand, within MPMX19_03975 at 266.553 kb on - strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.642 kb on + strand, within MPMX19_03975 at 266.643 kb on - strand, within MPMX19_03975 at 266.667 kb on + strand, within MPMX19_03975 at 266.915 kb on - strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.015 kb on + strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.016 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.032 kb on - strand at 267.033 kb on + strand at 267.033 kb on + strand at 267.033 kb on + strand at 267.034 kb on - strand at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.268 kb on + strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.269 kb on - strand, within MPMX19_03976 at 267.373 kb on + strand at 267.374 kb on - strand at 267.597 kb on + strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.598 kb on - strand at 267.676 kb on - strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.741 kb on + strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.742 kb on - strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.798 kb on + strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977 at 267.799 kb on - strand, within MPMX19_03977
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 264,986 + MPMX19_03974 0.50 -1.9 264,986 + MPMX19_03974 0.50 -0.5 264,986 + MPMX19_03974 0.50 -0.2 264,986 + MPMX19_03974 0.50 -0.7 264,986 + MPMX19_03974 0.50 +1.8 264,986 + MPMX19_03974 0.50 -0.4 264,986 + MPMX19_03974 0.50 +0.2 264,986 + MPMX19_03974 0.50 -0.1 264,986 + MPMX19_03974 0.50 -0.5 264,986 + MPMX19_03974 0.50 +0.8 264,986 + MPMX19_03974 0.50 -0.5 264,986 + MPMX19_03974 0.50 +0.7 264,986 + MPMX19_03974 0.50 +0.4 264,986 + MPMX19_03974 0.50 -0.5 264,986 + MPMX19_03974 0.50 -0.4 264,987 - MPMX19_03974 0.51 -0.3 264,987 - MPMX19_03974 0.51 +0.1 264,987 - MPMX19_03974 0.51 -1.5 264,987 - MPMX19_03974 0.51 -1.0 264,987 - MPMX19_03974 0.51 +0.0 264,987 - MPMX19_03974 0.51 +0.3 264,987 - MPMX19_03974 0.51 +0.2 264,987 - MPMX19_03974 0.51 +0.4 264,987 - MPMX19_03974 0.51 +0.9 264,987 - MPMX19_03974 0.51 -0.9 264,987 - MPMX19_03974 0.51 -0.5 264,992 + MPMX19_03974 0.51 -1.6 264,992 + MPMX19_03974 0.51 -0.3 264,992 + MPMX19_03974 0.51 -1.6 264,992 + MPMX19_03974 0.51 -1.5 264,992 + MPMX19_03974 0.51 -0.3 264,992 + MPMX19_03974 0.51 +1.7 264,992 + MPMX19_03974 0.51 -1.0 264,993 - MPMX19_03974 0.51 -0.5 264,993 - MPMX19_03974 0.51 +0.8 264,993 - MPMX19_03974 0.51 -2.1 264,993 - MPMX19_03974 0.51 -0.5 264,993 - MPMX19_03974 0.51 -1.5 264,993 - MPMX19_03974 0.51 +0.2 264,993 - MPMX19_03974 0.51 -1.0 264,993 - MPMX19_03974 0.51 +0.1 264,993 - MPMX19_03974 0.51 +0.2 264,993 - MPMX19_03974 0.51 +0.1 264,993 - MPMX19_03974 0.51 -1.0 264,993 - MPMX19_03974 0.51 -0.2 264,995 + MPMX19_03974 0.51 +0.3 264,995 + MPMX19_03974 0.51 -0.1 264,995 + MPMX19_03974 0.51 +1.1 264,995 + MPMX19_03974 0.51 +0.5 264,995 + MPMX19_03974 0.51 +0.8 264,995 + MPMX19_03974 0.51 +1.0 264,995 + MPMX19_03974 0.51 +1.0 264,996 - MPMX19_03974 0.51 +0.2 264,996 - MPMX19_03974 0.51 -1.4 264,996 - MPMX19_03974 0.51 -0.4 264,996 - MPMX19_03974 0.51 -0.5 264,996 - MPMX19_03974 0.51 +0.4 264,996 - MPMX19_03974 0.51 +0.4 264,996 - MPMX19_03974 0.51 -0.1 265,265 + MPMX19_03974 0.68 +0.1 265,265 + MPMX19_03974 0.68 -0.9 265,265 + MPMX19_03974 0.68 +1.8 265,265 + MPMX19_03974 0.68 +0.7 265,265 + MPMX19_03974 0.68 -1.4 265,265 + MPMX19_03974 0.68 -2.2 265,266 - MPMX19_03974 0.69 -0.4 265,266 - MPMX19_03974 0.69 +0.1 265,266 - MPMX19_03974 0.69 -1.2 265,266 - MPMX19_03974 0.69 +1.2 265,266 - MPMX19_03974 0.69 -0.7 265,319 + MPMX19_03974 0.72 -1.5 265,319 + MPMX19_03974 0.72 +0.3 265,319 + MPMX19_03974 0.72 -1.2 265,319 + MPMX19_03974 0.72 +2.0 265,319 + MPMX19_03974 0.72 -1.6 265,320 - MPMX19_03974 0.72 -2.1 265,320 - MPMX19_03974 0.72 +0.7 265,320 - MPMX19_03974 0.72 +0.1 265,320 - MPMX19_03974 0.72 -2.2 265,320 - MPMX19_03974 0.72 +0.5 265,320 - MPMX19_03974 0.72 -0.4 265,320 - MPMX19_03974 0.72 -0.8 265,320 - MPMX19_03974 0.72 +0.2 265,320 - MPMX19_03974 0.72 -1.3 265,673 + +0.9 265,673 + -1.8 265,673 + +0.9 265,673 + -0.2 265,673 + +1.1 265,673 + -0.3 265,674 - -0.2 265,674 - -0.5 265,751 + -1.4 265,751 + -0.4 265,751 + +0.5 265,751 + -1.7 265,751 + +2.6 265,751 + -0.6 265,751 + +0.7 265,751 + -1.8 265,751 + -1.8 265,751 + -0.5 265,751 + -0.4 265,752 - -1.4 265,752 - -1.2 265,752 - +0.5 265,752 - -0.4 265,752 - -1.0 265,752 - -0.8 265,752 - +1.1 265,752 - -0.5 265,830 + -2.1 265,830 + -1.0 265,830 + -1.9 265,830 + -0.9 265,830 + +0.3 265,949 + -0.2 265,949 + -0.3 265,949 + -0.2 265,949 + +1.0 265,949 + +0.9 265,949 + -0.8 265,949 + -0.2 265,950 - -2.0 265,950 - -0.7 265,950 - +0.2 265,950 - +0.6 265,950 - +1.5 265,950 - -1.8 265,950 - -1.3 265,950 - -1.4 265,950 - -0.2 266,022 + -0.0 266,022 + +0.4 266,022 + +0.3 266,022 + -2.1 266,022 + +0.2 266,022 + -0.7 266,022 + +0.4 266,022 + +0.0 266,023 - -0.5 266,023 - +0.2 266,023 - -0.7 266,023 - -1.0 266,023 - -0.5 266,023 - +0.5 266,023 - +1.8 266,023 - -0.8 266,023 - -1.2 266,499 + MPMX19_03975 0.64 -2.3 266,500 - MPMX19_03975 0.64 -2.5 266,500 - MPMX19_03975 0.64 +0.2 266,500 - MPMX19_03975 0.64 -1.5 266,500 - MPMX19_03975 0.64 -0.8 266,552 + MPMX19_03975 0.70 -1.1 266,553 - MPMX19_03975 0.70 +0.8 266,553 - MPMX19_03975 0.70 -2.8 266,642 + MPMX19_03975 0.81 -0.1 266,642 + MPMX19_03975 0.81 -0.4 266,642 + MPMX19_03975 0.81 +0.3 266,643 - MPMX19_03975 0.81 +1.8 266,667 + MPMX19_03975 0.84 -1.4 266,915 - -1.4 267,015 + -0.8 267,015 + -2.8 267,015 + +0.2 267,015 + -1.5 267,016 - +0.5 267,016 - -3.1 267,016 - -1.1 267,016 - +0.2 267,016 - -0.7 267,032 - -1.5 267,032 - +0.1 267,032 - -0.2 267,033 + +0.4 267,033 + -1.0 267,033 + -0.4 267,034 - -1.7 267,268 + MPMX19_03976 0.64 -2.1 267,268 + MPMX19_03976 0.64 -1.3 267,268 + MPMX19_03976 0.64 +0.6 267,268 + MPMX19_03976 0.64 +2.1 267,268 + MPMX19_03976 0.64 -0.1 267,268 + MPMX19_03976 0.64 -1.1 267,268 + MPMX19_03976 0.64 -0.1 267,268 + MPMX19_03976 0.64 -1.7 267,268 + MPMX19_03976 0.64 +0.4 267,269 - MPMX19_03976 0.65 -0.8 267,269 - MPMX19_03976 0.65 -0.1 267,269 - MPMX19_03976 0.65 +0.6 267,269 - MPMX19_03976 0.65 -0.9 267,269 - MPMX19_03976 0.65 -1.6 267,269 - MPMX19_03976 0.65 -0.9 267,269 - MPMX19_03976 0.65 -0.9 267,269 - MPMX19_03976 0.65 +0.5 267,269 - MPMX19_03976 0.65 -0.4 267,373 + -2.1 267,374 - -0.2 267,597 + -0.6 267,598 - -0.5 267,598 - -0.1 267,598 - +1.2 267,598 - +0.4 267,676 - MPMX19_03977 0.12 -0.4 267,741 + MPMX19_03977 0.17 -1.2 267,741 + MPMX19_03977 0.17 +0.1 267,741 + MPMX19_03977 0.17 -0.4 267,741 + MPMX19_03977 0.17 -0.9 267,741 + MPMX19_03977 0.17 +1.6 267,741 + MPMX19_03977 0.17 -1.8 267,741 + MPMX19_03977 0.17 -0.9 267,741 + MPMX19_03977 0.17 -0.3 267,741 + MPMX19_03977 0.17 +0.8 267,742 - MPMX19_03977 0.17 +0.1 267,742 - MPMX19_03977 0.17 -0.4 267,742 - MPMX19_03977 0.17 -0.6 267,742 - MPMX19_03977 0.17 +0.1 267,742 - MPMX19_03977 0.17 -1.0 267,742 - MPMX19_03977 0.17 +0.8 267,742 - MPMX19_03977 0.17 -0.8 267,742 - MPMX19_03977 0.17 -1.6 267,742 - MPMX19_03977 0.17 -0.8 267,742 - MPMX19_03977 0.17 +1.6 267,798 + MPMX19_03977 0.22 +0.2 267,798 + MPMX19_03977 0.22 -0.5 267,798 + MPMX19_03977 0.22 -0.4 267,799 - MPMX19_03977 0.22 -0.1 267,799 - MPMX19_03977 0.22 +0.8 267,799 - MPMX19_03977 0.22 -0.7
Or see this region's nucleotide sequence