Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03915

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03913 and MPMX19_03914 are separated by 39 nucleotidesMPMX19_03914 and MPMX19_03915 are separated by 69 nucleotidesMPMX19_03915 and MPMX19_03916 are separated by 74 nucleotidesMPMX19_03916 and MPMX19_03917 overlap by 8 nucleotides MPMX19_03913: MPMX19_03913 - hypothetical protein, at 191,253 to 192,770 _03913 MPMX19_03914: MPMX19_03914 - hypothetical protein, at 192,810 to 193,316 _03914 MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351 _03915 MPMX19_03916: MPMX19_03916 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 194,426 to 195,076 _03916 MPMX19_03917: MPMX19_03917 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 195,069 to 196,088 _03917 Position (kb) 193 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 192.550 kb on + strand, within MPMX19_03913at 192.550 kb on + strand, within MPMX19_03913at 192.550 kb on + strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.551 kb on - strand, within MPMX19_03913at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.868 kb on + strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.869 kb on - strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.952 kb on + strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.953 kb on - strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.982 kb on + strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.983 kb on - strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.994 kb on + strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 192.995 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.040 kb on - strand, within MPMX19_03914at 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.387 kb on + strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.388 kb on - strandat 193.474 kb on + strandat 193.474 kb on + strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 193.475 kb on - strandat 194.083 kb on + strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.084 kb on - strand, within MPMX19_03915at 194.194 kb on + strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.195 kb on - strand, within MPMX19_03915at 194.233 kb on + strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.234 kb on - strand, within MPMX19_03915at 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on + strandat 194.351 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.352 kb on - strandat 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.508 kb on + strand, within MPMX19_03916at 194.509 kb on - strand, within MPMX19_03916at 194.961 kb on + strand, within MPMX19_03916at 194.962 kb on - strand, within MPMX19_03916at 195.202 kb on + strand, within MPMX19_03917at 195.202 kb on + strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917at 195.203 kb on - strand, within MPMX19_03917

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
192,550 + MPMX19_03913 0.85 -0.6
192,550 + MPMX19_03913 0.85 -0.6
192,550 + MPMX19_03913 0.85 -1.2
192,551 - MPMX19_03913 0.86 +0.2
192,551 - MPMX19_03913 0.86 +0.5
192,551 - MPMX19_03913 0.86 -2.1
192,551 - MPMX19_03913 0.86 -0.2
192,551 - MPMX19_03913 0.86 -1.1
192,551 - MPMX19_03913 0.86 -1.2
192,551 - MPMX19_03913 0.86 -0.0
192,551 - MPMX19_03913 0.86 +0.4
192,868 + MPMX19_03914 0.11 +1.0
192,868 + MPMX19_03914 0.11 -1.4
192,868 + MPMX19_03914 0.11 +0.7
192,868 + MPMX19_03914 0.11 -1.3
192,868 + MPMX19_03914 0.11 -1.6
192,868 + MPMX19_03914 0.11 -1.5
192,869 - MPMX19_03914 0.12 -1.0
192,869 - MPMX19_03914 0.12 -0.1
192,869 - MPMX19_03914 0.12 +0.2
192,869 - MPMX19_03914 0.12 -0.5
192,869 - MPMX19_03914 0.12 +1.3
192,952 + MPMX19_03914 0.28 -1.0
192,952 + MPMX19_03914 0.28 -1.3
192,952 + MPMX19_03914 0.28 -0.4
192,952 + MPMX19_03914 0.28 -0.6
192,952 + MPMX19_03914 0.28 +0.2
192,952 + MPMX19_03914 0.28 +2.0
192,952 + MPMX19_03914 0.28 +0.1
192,952 + MPMX19_03914 0.28 -0.2
192,952 + MPMX19_03914 0.28 -1.6
192,952 + MPMX19_03914 0.28 -0.7
192,952 + MPMX19_03914 0.28 -1.1
192,952 + MPMX19_03914 0.28 +0.8
192,952 + MPMX19_03914 0.28 +1.0
192,952 + MPMX19_03914 0.28 -1.0
192,952 + MPMX19_03914 0.28 -0.7
192,952 + MPMX19_03914 0.28 -1.6
192,952 + MPMX19_03914 0.28 -0.6
192,952 + MPMX19_03914 0.28 +0.4
192,953 - MPMX19_03914 0.28 +0.3
192,953 - MPMX19_03914 0.28 -0.0
192,953 - MPMX19_03914 0.28 +0.4
192,953 - MPMX19_03914 0.28 +1.0
192,953 - MPMX19_03914 0.28 -0.3
192,953 - MPMX19_03914 0.28 +0.5
192,953 - MPMX19_03914 0.28 +0.3
192,953 - MPMX19_03914 0.28 -0.2
192,982 + MPMX19_03914 0.34 +0.3
192,982 + MPMX19_03914 0.34 -1.6
192,982 + MPMX19_03914 0.34 -1.7
192,982 + MPMX19_03914 0.34 +0.6
192,982 + MPMX19_03914 0.34 -1.9
192,982 + MPMX19_03914 0.34 -1.2
192,982 + MPMX19_03914 0.34 -0.0
192,982 + MPMX19_03914 0.34 -0.1
192,982 + MPMX19_03914 0.34 -0.5
192,983 - MPMX19_03914 0.34 -0.8
192,983 - MPMX19_03914 0.34 +0.2
192,983 - MPMX19_03914 0.34 -0.8
192,983 - MPMX19_03914 0.34 +0.9
192,983 - MPMX19_03914 0.34 +1.3
192,983 - MPMX19_03914 0.34 +0.8
192,983 - MPMX19_03914 0.34 -3.0
192,983 - MPMX19_03914 0.34 -0.7
192,983 - MPMX19_03914 0.34 -2.3
192,983 - MPMX19_03914 0.34 +1.8
192,983 - MPMX19_03914 0.34 -1.5
192,983 - MPMX19_03914 0.34 +0.8
192,983 - MPMX19_03914 0.34 -0.2
192,983 - MPMX19_03914 0.34 -0.5
192,983 - MPMX19_03914 0.34 -0.3
192,983 - MPMX19_03914 0.34 +0.1
192,983 - MPMX19_03914 0.34 +0.8
192,983 - MPMX19_03914 0.34 -1.4
192,983 - MPMX19_03914 0.34 -0.6
192,994 + MPMX19_03914 0.36 -1.3
192,994 + MPMX19_03914 0.36 -0.3
192,994 + MPMX19_03914 0.36 -0.3
192,994 + MPMX19_03914 0.36 -1.4
192,994 + MPMX19_03914 0.36 -0.4
192,994 + MPMX19_03914 0.36 +0.7
192,995 - MPMX19_03914 0.36 -0.2
192,995 - MPMX19_03914 0.36 +0.1
192,995 - MPMX19_03914 0.36 +0.1
192,995 - MPMX19_03914 0.36 +0.0
192,995 - MPMX19_03914 0.36 -0.6
193,040 - MPMX19_03914 0.45 +0.3
193,040 - MPMX19_03914 0.45 -1.2
193,040 - MPMX19_03914 0.45 -3.0
193,387 + -1.7
193,387 + +1.2
193,387 + -1.2
193,387 + -0.4
193,387 + -0.3
193,387 + -2.3
193,387 + +0.7
193,388 - -0.3
193,388 - -1.6
193,388 - -1.4
193,388 - -0.6
193,474 + -0.9
193,474 + +0.8
193,475 - -0.1
193,475 - -1.6
193,475 - +0.5
193,475 - -0.4
194,083 + MPMX19_03915 0.72 -1.7
194,084 - MPMX19_03915 0.72 +0.2
194,084 - MPMX19_03915 0.72 -0.7
194,084 - MPMX19_03915 0.72 -1.0
194,194 + MPMX19_03915 0.84 +0.0
194,195 - MPMX19_03915 0.84 -0.5
194,195 - MPMX19_03915 0.84 -1.5
194,233 + MPMX19_03915 0.88 -0.5
194,234 - MPMX19_03915 0.88 -0.0
194,234 - MPMX19_03915 0.88 +0.8
194,234 - MPMX19_03915 0.88 -2.0
194,351 + +0.3
194,351 + -0.3
194,351 + +0.2
194,351 + -0.2
194,351 + +0.9
194,351 - +0.9
194,352 - -1.8
194,352 - +0.2
194,352 - -0.3
194,352 - -0.7
194,508 + MPMX19_03916 0.13 -1.9
194,508 + MPMX19_03916 0.13 -1.5
194,508 + MPMX19_03916 0.13 +1.2
194,509 - MPMX19_03916 0.13 +0.6
194,961 + MPMX19_03916 0.82 -0.4
194,962 - MPMX19_03916 0.82 +0.6
195,202 + MPMX19_03917 0.13 -2.6
195,202 + MPMX19_03917 0.13 +0.2
195,203 - MPMX19_03917 0.13 +0.8
195,203 - MPMX19_03917 0.13 -1.0

Or see this region's nucleotide sequence