Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03892

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03890 and MPMX19_03891 are separated by 3 nucleotidesMPMX19_03891 and MPMX19_03892 are separated by 99 nucleotidesMPMX19_03892 and MPMX19_03893 are separated by 22 nucleotidesMPMX19_03893 and MPMX19_03894 are separated by 80 nucleotides MPMX19_03890: MPMX19_03890 - Riboflavin transport system permease protein RibX, at 165,116 to 165,889 _03890 MPMX19_03891: MPMX19_03891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,893 to 166,747 _03891 MPMX19_03892: MPMX19_03892 - HTH-type transcriptional repressor NanR, at 166,847 to 167,698 _03892 MPMX19_03893: MPMX19_03893 - hypothetical protein, at 167,721 to 168,119 _03893 MPMX19_03894: MPMX19_03894 - Cytosine deaminase, at 168,200 to 169,435 _03894 Position (kb) 166 167 168Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.530 kb on - strand, within MPMX19_03891at 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.953 kb on + strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 166.954 kb on - strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.456 kb on + strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.457 kb on - strand, within MPMX19_03892at 167.475 kb on - strand, within MPMX19_03892at 167.503 kb on + strand, within MPMX19_03892at 167.503 kb on + strand, within MPMX19_03892at 167.504 kb on - strand, within MPMX19_03892at 167.687 kb on + strandat 167.687 kb on + strandat 167.687 kb on + strandat 167.688 kb on - strandat 167.688 kb on - strandat 167.695 kb on - strandat 167.696 kb on + strandat 167.696 kb on + strandat 167.697 kb on - strandat 167.697 kb on - strandat 167.697 kb on - strandat 167.717 kb on + strandat 167.717 kb on + strandat 167.717 kb on + strandat 167.718 kb on - strandat 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.818 kb on + strand, within MPMX19_03893at 167.819 kb on - strand, within MPMX19_03893at 167.819 kb on - strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.860 kb on + strand, within MPMX19_03893at 167.861 kb on - strand, within MPMX19_03893at 167.861 kb on - strand, within MPMX19_03893at 167.861 kb on - strand, within MPMX19_03893at 167.866 kb on + strand, within MPMX19_03893at 167.866 kb on + strand, within MPMX19_03893at 167.866 kb on + strand, within MPMX19_03893at 167.866 kb on + strand, within MPMX19_03893at 167.866 kb on + strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.867 kb on - strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.878 kb on + strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.879 kb on - strand, within MPMX19_03893at 167.914 kb on + strand, within MPMX19_03893at 167.914 kb on + strand, within MPMX19_03893at 167.914 kb on + strand, within MPMX19_03893at 167.915 kb on - strand, within MPMX19_03893at 167.915 kb on - strand, within MPMX19_03893at 167.915 kb on - strand, within MPMX19_03893at 167.944 kb on + strand, within MPMX19_03893at 167.944 kb on + strand, within MPMX19_03893at 167.944 kb on + strand, within MPMX19_03893at 167.945 kb on - strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.031 kb on + strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.032 kb on - strand, within MPMX19_03893at 168.076 kb on + strand, within MPMX19_03893at 168.076 kb on + strand, within MPMX19_03893at 168.076 kb on + strand, within MPMX19_03893at 168.076 kb on + strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.077 kb on - strand, within MPMX19_03893at 168.143 kb on + strandat 168.144 kb on - strandat 168.150 kb on - strandat 168.500 kb on + strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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165,882 + -0.4
165,882 + -0.6
165,882 + -0.5
165,882 + -3.0
165,883 - -0.4
165,883 - -2.3
165,883 - -1.6
165,883 - -0.7
165,883 - -1.3
165,883 - +0.8
165,883 - -1.5
165,883 - -0.3
165,883 - -0.4
166,368 + MPMX19_03891 0.56 +0.7
166,368 + MPMX19_03891 0.56 -0.6
166,368 + MPMX19_03891 0.56 +0.3
166,369 - MPMX19_03891 0.56 +0.8
166,369 - MPMX19_03891 0.56 -0.1
166,529 + MPMX19_03891 0.74 +0.1
166,529 + MPMX19_03891 0.74 +0.5
166,529 + MPMX19_03891 0.74 -1.5
166,529 + MPMX19_03891 0.74 -0.3
166,529 + MPMX19_03891 0.74 +0.8
166,530 - MPMX19_03891 0.75 -0.3
166,754 + -0.3
166,754 + +0.3
166,754 + -2.2
166,754 + +0.1
166,754 + -0.7
166,953 + MPMX19_03892 0.12 -1.5
166,953 + MPMX19_03892 0.12 -0.8
166,953 + MPMX19_03892 0.12 +0.3
166,953 + MPMX19_03892 0.12 -1.3
166,953 + MPMX19_03892 0.12 -0.2
166,954 - MPMX19_03892 0.13 +1.2
166,954 - MPMX19_03892 0.13 -1.1
166,954 - MPMX19_03892 0.13 -1.6
167,456 + MPMX19_03892 0.71 -1.5
167,456 + MPMX19_03892 0.71 -1.7
167,456 + MPMX19_03892 0.71 +0.0
167,456 + MPMX19_03892 0.71 -1.2
167,456 + MPMX19_03892 0.71 -0.5
167,456 + MPMX19_03892 0.71 -1.3
167,457 - MPMX19_03892 0.72 +1.3
167,457 - MPMX19_03892 0.72 -0.2
167,457 - MPMX19_03892 0.72 -1.0
167,457 - MPMX19_03892 0.72 -0.1
167,457 - MPMX19_03892 0.72 +0.8
167,457 - MPMX19_03892 0.72 -1.0
167,457 - MPMX19_03892 0.72 -1.0
167,475 - MPMX19_03892 0.74 -0.9
167,503 + MPMX19_03892 0.77 -1.3
167,503 + MPMX19_03892 0.77 -0.6
167,504 - MPMX19_03892 0.77 -1.3
167,687 + -1.2
167,687 + +1.2
167,687 + -1.1
167,688 - +0.3
167,688 - -1.1
167,695 - +0.9
167,696 + +1.0
167,696 + -0.6
167,697 - +0.5
167,697 - -0.0
167,697 - -0.2
167,717 + -0.2
167,717 + -1.0
167,717 + -0.5
167,718 - -0.6
167,818 + MPMX19_03893 0.24 +0.3
167,818 + MPMX19_03893 0.24 +0.6
167,818 + MPMX19_03893 0.24 +2.3
167,818 + MPMX19_03893 0.24 -0.2
167,818 + MPMX19_03893 0.24 -1.0
167,818 + MPMX19_03893 0.24 +1.1
167,818 + MPMX19_03893 0.24 -1.0
167,819 - MPMX19_03893 0.25 -0.9
167,819 - MPMX19_03893 0.25 -1.6
167,860 + MPMX19_03893 0.35 +0.4
167,860 + MPMX19_03893 0.35 -0.6
167,860 + MPMX19_03893 0.35 -1.6
167,860 + MPMX19_03893 0.35 +0.4
167,860 + MPMX19_03893 0.35 -0.2
167,860 + MPMX19_03893 0.35 -2.1
167,860 + MPMX19_03893 0.35 +0.1
167,860 + MPMX19_03893 0.35 -0.3
167,860 + MPMX19_03893 0.35 +0.3
167,860 + MPMX19_03893 0.35 -1.5
167,861 - MPMX19_03893 0.35 -1.6
167,861 - MPMX19_03893 0.35 -1.7
167,861 - MPMX19_03893 0.35 -0.7
167,866 + MPMX19_03893 0.36 -1.2
167,866 + MPMX19_03893 0.36 -0.9
167,866 + MPMX19_03893 0.36 -0.3
167,866 + MPMX19_03893 0.36 +0.8
167,866 + MPMX19_03893 0.36 +0.3
167,867 - MPMX19_03893 0.37 +2.6
167,867 - MPMX19_03893 0.37 -1.2
167,867 - MPMX19_03893 0.37 -0.7
167,867 - MPMX19_03893 0.37 -0.3
167,867 - MPMX19_03893 0.37 +0.6
167,867 - MPMX19_03893 0.37 +1.5
167,867 - MPMX19_03893 0.37 +0.0
167,878 + MPMX19_03893 0.39 -0.2
167,878 + MPMX19_03893 0.39 +0.8
167,878 + MPMX19_03893 0.39 -0.6
167,878 + MPMX19_03893 0.39 +0.8
167,878 + MPMX19_03893 0.39 -0.6
167,878 + MPMX19_03893 0.39 +0.8
167,878 + MPMX19_03893 0.39 +0.3
167,879 - MPMX19_03893 0.40 +0.0
167,879 - MPMX19_03893 0.40 +0.8
167,879 - MPMX19_03893 0.40 +0.8
167,879 - MPMX19_03893 0.40 +0.4
167,879 - MPMX19_03893 0.40 +1.6
167,879 - MPMX19_03893 0.40 -0.5
167,914 + MPMX19_03893 0.48 -0.2
167,914 + MPMX19_03893 0.48 +1.3
167,914 + MPMX19_03893 0.48 -0.2
167,915 - MPMX19_03893 0.49 -1.2
167,915 - MPMX19_03893 0.49 -0.2
167,915 - MPMX19_03893 0.49 -0.6
167,944 + MPMX19_03893 0.56 +0.8
167,944 + MPMX19_03893 0.56 -0.4
167,944 + MPMX19_03893 0.56 +0.3
167,945 - MPMX19_03893 0.56 -0.1
168,031 + MPMX19_03893 0.78 +1.8
168,031 + MPMX19_03893 0.78 -1.0
168,031 + MPMX19_03893 0.78 -0.7
168,031 + MPMX19_03893 0.78 -2.1
168,031 + MPMX19_03893 0.78 -1.2
168,031 + MPMX19_03893 0.78 +0.8
168,031 + MPMX19_03893 0.78 +1.0
168,031 + MPMX19_03893 0.78 -0.1
168,031 + MPMX19_03893 0.78 +1.0
168,031 + MPMX19_03893 0.78 -0.2
168,031 + MPMX19_03893 0.78 +0.8
168,031 + MPMX19_03893 0.78 -0.3
168,031 + MPMX19_03893 0.78 -0.7
168,031 + MPMX19_03893 0.78 +0.1
168,031 + MPMX19_03893 0.78 -1.6
168,032 - MPMX19_03893 0.78 +0.3
168,032 - MPMX19_03893 0.78 -0.5
168,032 - MPMX19_03893 0.78 -2.3
168,032 - MPMX19_03893 0.78 +0.5
168,032 - MPMX19_03893 0.78 -1.1
168,032 - MPMX19_03893 0.78 -2.3
168,076 + MPMX19_03893 0.89 -0.7
168,076 + MPMX19_03893 0.89 +0.4
168,076 + MPMX19_03893 0.89 -0.1
168,076 + MPMX19_03893 0.89 -0.2
168,077 - MPMX19_03893 0.89 -0.2
168,077 - MPMX19_03893 0.89 +0.0
168,077 - MPMX19_03893 0.89 +0.7
168,077 - MPMX19_03893 0.89 -1.0
168,077 - MPMX19_03893 0.89 -1.0
168,077 - MPMX19_03893 0.89 -1.2
168,077 - MPMX19_03893 0.89 -0.9
168,077 - MPMX19_03893 0.89 -0.4
168,143 + -1.4
168,144 - -2.9
168,150 - -1.5
168,500 + MPMX19_03894 0.24 -0.5
168,501 - MPMX19_03894 0.24 +0.3
168,501 - MPMX19_03894 0.24 -0.6
168,501 - MPMX19_03894 0.24 +0.8
168,553 + MPMX19_03894 0.29 +1.5
168,553 + MPMX19_03894 0.29 -1.1
168,553 + MPMX19_03894 0.29 +0.3
168,553 + MPMX19_03894 0.29 -1.7
168,553 + MPMX19_03894 0.29 -0.5
168,553 + MPMX19_03894 0.29 -0.1
168,554 - MPMX19_03894 0.29 +0.1
168,554 - MPMX19_03894 0.29 +0.0
168,554 - MPMX19_03894 0.29 -0.5
168,554 - MPMX19_03894 0.29 -1.0
168,554 - MPMX19_03894 0.29 -0.3
168,554 - MPMX19_03894 0.29 +0.5
168,554 - MPMX19_03894 0.29 -1.1
168,554 - MPMX19_03894 0.29 -0.7
168,554 - MPMX19_03894 0.29 -0.3
168,554 - MPMX19_03894 0.29 +1.1

Or see this region's nucleotide sequence