Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03886 and MPMX19_03887 are separated by 116 nucleotides MPMX19_03887 and MPMX19_03888 are separated by 196 nucleotides
MPMX19_03886: MPMX19_03886 - hypothetical protein, at 145,379 to 160,201
_03886
MPMX19_03887: MPMX19_03887 - Photosystem I assembly protein Ycf3, at 160,318 to 162,240
_03887
MPMX19_03888: MPMX19_03888 - Glutathione hydrolase-like YwrD proenzyme, at 162,437 to 164,008
_03888
Position (kb) 160
161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 159.389 kb on + strand at 159.389 kb on + strand at 159.389 kb on + strand at 159.389 kb on + strand at 159.390 kb on - strand at 159.390 kb on - strand at 159.542 kb on + strand at 159.543 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.693 kb on - strand at 159.761 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.821 kb on + strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.822 kb on - strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.890 kb on + strand at 159.891 kb on - strand at 159.891 kb on - strand at 159.891 kb on - strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.950 kb on + strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 159.951 kb on - strand at 160.010 kb on + strand at 160.010 kb on + strand at 160.010 kb on + strand at 160.011 kb on - strand at 160.011 kb on - strand at 160.011 kb on - strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.019 kb on + strand at 160.020 kb on - strand at 160.020 kb on - strand at 160.079 kb on + strand at 160.079 kb on + strand at 160.080 kb on - strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.133 kb on + strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.134 kb on - strand at 160.461 kb on - strand at 160.847 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.853 kb on + strand, within MPMX19_03887 at 160.854 kb on - strand, within MPMX19_03887 at 161.057 kb on + strand, within MPMX19_03887 at 161.058 kb on - strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.195 kb on + strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.196 kb on - strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.552 kb on - strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.717 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.976 kb on - strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 162.116 kb on + strand at 162.116 kb on + strand at 162.117 kb on - strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.148 kb on - strand at 162.148 kb on - strand at 162.270 kb on - strand at 162.283 kb on + strand at 162.283 kb on + strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.409 kb on + strand at 162.783 kb on + strand, within MPMX19_03888 at 162.783 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.175 kb on + strand, within MPMX19_03888 at 163.176 kb on - strand, within MPMX19_03888
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 159,389 + +0.5 159,389 + -0.5 159,389 + -0.8 159,389 + -2.6 159,390 - -0.4 159,390 - -2.0 159,542 + -1.3 159,543 - +0.5 159,693 - +0.4 159,693 - +0.8 159,693 - -2.2 159,693 - -0.7 159,761 + -0.3 159,821 + -2.2 159,821 + -0.7 159,821 + -1.4 159,821 + -0.3 159,821 + -1.3 159,821 + -0.3 159,822 - +0.4 159,822 - +1.5 159,822 - -0.0 159,822 - -0.7 159,822 - -1.5 159,822 - -2.1 159,822 - -0.4 159,822 - +1.0 159,822 - +0.0 159,822 - -1.2 159,890 + +0.5 159,890 + -1.2 159,890 + +0.5 159,890 + -0.2 159,890 + -1.0 159,891 - +0.5 159,891 - -1.7 159,891 - -1.0 159,950 + -0.7 159,950 + +0.9 159,950 + -1.5 159,950 + -1.2 159,950 + -1.2 159,950 + +0.3 159,950 + -1.6 159,950 + -0.2 159,951 - +0.6 159,951 - +1.0 159,951 - -1.3 159,951 - +0.1 159,951 - +0.3 159,951 - +0.7 159,951 - -0.6 159,951 - -1.0 159,951 - -0.6 159,951 - +0.3 160,010 + +0.2 160,010 + +0.0 160,010 + -1.0 160,011 - -1.0 160,011 - -1.3 160,011 - +0.0 160,019 + +0.2 160,019 + +0.4 160,019 + -1.1 160,019 + +0.0 160,020 - -0.6 160,020 - +0.2 160,079 + +0.8 160,079 + -0.5 160,080 - -2.3 160,133 + -0.4 160,133 + -0.7 160,133 + -0.5 160,133 + +0.5 160,134 - +0.3 160,134 - +0.6 160,134 - +1.1 160,134 - -0.7 160,134 - +2.0 160,461 - -0.4 160,847 + MPMX19_03887 0.28 -0.7 160,853 + MPMX19_03887 0.28 +0.3 160,853 + MPMX19_03887 0.28 -1.6 160,853 + MPMX19_03887 0.28 +0.6 160,853 + MPMX19_03887 0.28 -1.6 160,853 + MPMX19_03887 0.28 -1.1 160,854 - MPMX19_03887 0.28 +0.4 161,057 + MPMX19_03887 0.38 -1.7 161,058 - MPMX19_03887 0.38 +0.3 161,195 + MPMX19_03887 0.46 -0.1 161,195 + MPMX19_03887 0.46 -1.5 161,195 + MPMX19_03887 0.46 +0.4 161,196 - MPMX19_03887 0.46 -0.5 161,196 - MPMX19_03887 0.46 -1.3 161,196 - MPMX19_03887 0.46 +2.8 161,196 - MPMX19_03887 0.46 -1.3 161,196 - MPMX19_03887 0.46 +0.4 161,456 + MPMX19_03887 0.59 +0.2 161,456 + MPMX19_03887 0.59 +0.7 161,456 + MPMX19_03887 0.59 +0.9 161,456 + MPMX19_03887 0.59 +0.3 161,456 + MPMX19_03887 0.59 -0.7 161,457 - MPMX19_03887 0.59 -0.2 161,457 - MPMX19_03887 0.59 +0.1 161,457 - MPMX19_03887 0.59 -0.2 161,457 - MPMX19_03887 0.59 -0.6 161,457 - MPMX19_03887 0.59 -1.2 161,457 - MPMX19_03887 0.59 -0.2 161,457 - MPMX19_03887 0.59 -1.6 161,472 - MPMX19_03887 0.60 -0.7 161,472 - MPMX19_03887 0.60 +1.1 161,552 - MPMX19_03887 0.64 -0.5 161,675 + MPMX19_03887 0.71 -1.7 161,675 + MPMX19_03887 0.71 +0.4 161,675 + MPMX19_03887 0.71 -0.3 161,675 + MPMX19_03887 0.71 -0.2 161,675 + MPMX19_03887 0.71 -0.7 161,675 + MPMX19_03887 0.71 +0.3 161,676 - MPMX19_03887 0.71 +2.0 161,676 - MPMX19_03887 0.71 -0.6 161,676 - MPMX19_03887 0.71 -0.0 161,676 - MPMX19_03887 0.71 -1.0 161,676 - MPMX19_03887 0.71 +0.8 161,717 + MPMX19_03887 0.73 -0.7 161,912 + MPMX19_03887 0.83 +1.5 161,912 + MPMX19_03887 0.83 +0.4 161,912 + MPMX19_03887 0.83 +0.6 161,913 - MPMX19_03887 0.83 +0.3 161,913 - MPMX19_03887 0.83 -0.0 161,913 - MPMX19_03887 0.83 -1.5 161,913 - MPMX19_03887 0.83 -0.3 161,976 - MPMX19_03887 0.86 +0.3 161,978 + MPMX19_03887 0.86 +0.0 161,978 + MPMX19_03887 0.86 +0.0 161,978 + MPMX19_03887 0.86 +0.0 161,978 + MPMX19_03887 0.86 +0.6 161,978 + MPMX19_03887 0.86 +0.5 161,978 + MPMX19_03887 0.86 -1.2 161,978 + MPMX19_03887 0.86 -0.6 161,978 + MPMX19_03887 0.86 -0.8 161,978 + MPMX19_03887 0.86 -0.9 161,978 + MPMX19_03887 0.86 -0.7 161,979 - MPMX19_03887 0.86 +1.8 161,979 - MPMX19_03887 0.86 -1.3 161,979 - MPMX19_03887 0.86 -1.3 161,979 - MPMX19_03887 0.86 -0.3 161,979 - MPMX19_03887 0.86 +0.6 161,979 - MPMX19_03887 0.86 +0.4 161,979 - MPMX19_03887 0.86 +0.1 161,979 - MPMX19_03887 0.86 +0.4 162,116 + -0.3 162,116 + -0.4 162,117 - +0.8 162,147 + -0.7 162,147 + -1.3 162,147 + -1.0 162,148 - -0.2 162,148 - +1.7 162,270 - -0.4 162,283 + -1.0 162,283 + -0.5 162,284 - -0.5 162,284 - -1.5 162,284 - -0.0 162,284 - +0.1 162,284 - -0.3 162,284 - -0.2 162,284 - +0.4 162,284 - -0.7 162,284 - +1.2 162,284 - +0.1 162,287 + +0.3 162,287 + -0.1 162,287 + -0.5 162,287 + -0.2 162,287 + -0.7 162,287 + -0.4 162,288 - -0.3 162,288 - -0.3 162,288 - +1.3 162,409 + +0.5 162,783 + MPMX19_03888 0.22 -2.5 162,783 + MPMX19_03888 0.22 +0.7 162,834 + MPMX19_03888 0.25 +1.3 162,834 + MPMX19_03888 0.25 -0.9 162,834 + MPMX19_03888 0.25 +1.5 162,834 + MPMX19_03888 0.25 -0.2 162,834 + MPMX19_03888 0.25 +0.4 162,834 + MPMX19_03888 0.25 -1.0 162,834 + MPMX19_03888 0.25 -0.4 162,834 + MPMX19_03888 0.25 +0.6 162,835 - MPMX19_03888 0.25 -1.6 162,835 - MPMX19_03888 0.25 +1.1 162,835 - MPMX19_03888 0.25 +0.1 162,835 - MPMX19_03888 0.25 +0.3 162,835 - MPMX19_03888 0.25 +0.3 162,835 - MPMX19_03888 0.25 +1.1 162,835 - MPMX19_03888 0.25 -0.7 162,957 + MPMX19_03888 0.33 +0.4 162,957 + MPMX19_03888 0.33 -0.6 162,957 + MPMX19_03888 0.33 +0.6 162,957 + MPMX19_03888 0.33 -0.5 162,957 + MPMX19_03888 0.33 -0.0 162,957 + MPMX19_03888 0.33 +0.3 162,957 + MPMX19_03888 0.33 +0.3 162,958 - MPMX19_03888 0.33 +0.6 162,958 - MPMX19_03888 0.33 -0.7 162,958 - MPMX19_03888 0.33 -0.8 162,958 - MPMX19_03888 0.33 -1.2 162,958 - MPMX19_03888 0.33 +0.5 163,011 + MPMX19_03888 0.37 +0.2 163,011 + MPMX19_03888 0.37 +0.5 163,011 + MPMX19_03888 0.37 -0.5 163,011 + MPMX19_03888 0.37 -1.3 163,011 + MPMX19_03888 0.37 -0.2 163,011 + MPMX19_03888 0.37 +0.5 163,012 - MPMX19_03888 0.37 -0.7 163,012 - MPMX19_03888 0.37 +0.3 163,032 + MPMX19_03888 0.38 -0.5 163,032 + MPMX19_03888 0.38 -0.7 163,033 - MPMX19_03888 0.38 -1.5 163,033 - MPMX19_03888 0.38 -1.0 163,175 + MPMX19_03888 0.47 +1.4 163,176 - MPMX19_03888 0.47 +0.3
Or see this region's nucleotide sequence