Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03872

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03870 and MPMX19_03871 are separated by 44 nucleotidesMPMX19_03871 and MPMX19_03872 are separated by 20 nucleotidesMPMX19_03872 and MPMX19_03873 are separated by 110 nucleotides MPMX19_03870: MPMX19_03870 - L-aspartate dehydrogenase, at 117,573 to 118,430 _03870 MPMX19_03871: MPMX19_03871 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 118,475 to 119,275 _03871 MPMX19_03872: MPMX19_03872 - hypothetical protein, at 119,296 to 119,994 _03872 MPMX19_03873: MPMX19_03873 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 120,105 to 121,412 _03873 Position (kb) 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.389 kb on + strandat 118.390 kb on - strandat 118.390 kb on - strandat 118.756 kb on + strand, within MPMX19_03871at 118.757 kb on - strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.180 kb on + strand, within MPMX19_03871at 119.181 kb on - strand, within MPMX19_03871at 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.222 kb on + strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.223 kb on - strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.258 kb on + strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.259 kb on - strandat 119.443 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.479 kb on + strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.480 kb on - strand, within MPMX19_03872at 119.507 kb on - strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.602 kb on + strand, within MPMX19_03872at 119.603 kb on - strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.713 kb on + strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.714 kb on - strand, within MPMX19_03872at 119.980 kb on + strandat 119.981 kb on - strandat 119.981 kb on - strandat 120.285 kb on + strand, within MPMX19_03873at 120.285 kb on + strand, within MPMX19_03873at 120.285 kb on + strand, within MPMX19_03873at 120.285 kb on + strand, within MPMX19_03873at 120.286 kb on - strand, within MPMX19_03873at 120.286 kb on - strand, within MPMX19_03873at 120.286 kb on - strand, within MPMX19_03873at 120.286 kb on - strand, within MPMX19_03873at 120.438 kb on + strand, within MPMX19_03873at 120.438 kb on + strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.439 kb on - strand, within MPMX19_03873at 120.462 kb on + strand, within MPMX19_03873at 120.462 kb on + strand, within MPMX19_03873at 120.462 kb on + strand, within MPMX19_03873at 120.773 kb on + strand, within MPMX19_03873

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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118,389 + -0.3
118,389 + -0.6
118,389 + -0.6
118,389 + -1.2
118,390 - +0.8
118,390 - -0.4
118,756 + MPMX19_03871 0.35 +1.4
118,757 - MPMX19_03871 0.35 -0.4
119,180 + MPMX19_03871 0.88 -0.2
119,180 + MPMX19_03871 0.88 +0.6
119,181 - MPMX19_03871 0.88 -0.3
119,222 + +1.6
119,222 + +0.1
119,222 + +0.1
119,222 + +0.3
119,222 + -3.2
119,223 - -0.1
119,223 - +0.5
119,223 - -1.0
119,223 - +1.2
119,223 - -2.2
119,223 - +1.2
119,223 - +0.5
119,223 - +0.2
119,223 - -1.2
119,223 - -0.7
119,223 - +1.0
119,258 + -1.0
119,258 + -0.5
119,258 + +0.5
119,258 + +0.8
119,258 + -0.3
119,258 + +0.2
119,259 - +0.3
119,259 - -0.0
119,259 - +0.3
119,259 - +0.7
119,259 - +0.0
119,259 - -0.5
119,259 - -0.7
119,259 - -0.5
119,259 - +0.5
119,259 - -1.2
119,443 + MPMX19_03872 0.21 -0.9
119,479 + MPMX19_03872 0.26 -1.0
119,479 + MPMX19_03872 0.26 -1.7
119,479 + MPMX19_03872 0.26 +1.4
119,480 - MPMX19_03872 0.26 -1.0
119,480 - MPMX19_03872 0.26 -0.2
119,480 - MPMX19_03872 0.26 -1.7
119,480 - MPMX19_03872 0.26 +1.0
119,480 - MPMX19_03872 0.26 -2.3
119,480 - MPMX19_03872 0.26 +0.0
119,507 - MPMX19_03872 0.30 -1.2
119,602 + MPMX19_03872 0.44 -0.7
119,602 + MPMX19_03872 0.44 -0.4
119,602 + MPMX19_03872 0.44 -0.3
119,602 + MPMX19_03872 0.44 -1.2
119,603 - MPMX19_03872 0.44 -0.4
119,713 + MPMX19_03872 0.60 -0.3
119,713 + MPMX19_03872 0.60 -1.5
119,713 + MPMX19_03872 0.60 -1.9
119,713 + MPMX19_03872 0.60 +0.7
119,713 + MPMX19_03872 0.60 +0.1
119,714 - MPMX19_03872 0.60 -0.7
119,714 - MPMX19_03872 0.60 -1.1
119,714 - MPMX19_03872 0.60 -0.6
119,714 - MPMX19_03872 0.60 -0.1
119,714 - MPMX19_03872 0.60 -1.3
119,980 + +1.5
119,981 - -0.6
119,981 - +0.5
120,285 + MPMX19_03873 0.14 -0.7
120,285 + MPMX19_03873 0.14 -0.4
120,285 + MPMX19_03873 0.14 +1.4
120,285 + MPMX19_03873 0.14 -1.3
120,286 - MPMX19_03873 0.14 -0.5
120,286 - MPMX19_03873 0.14 +1.4
120,286 - MPMX19_03873 0.14 +0.6
120,286 - MPMX19_03873 0.14 -1.3
120,438 + MPMX19_03873 0.25 +0.0
120,438 + MPMX19_03873 0.25 +1.8
120,439 - MPMX19_03873 0.26 +1.0
120,439 - MPMX19_03873 0.26 +0.8
120,439 - MPMX19_03873 0.26 -0.5
120,439 - MPMX19_03873 0.26 -0.8
120,439 - MPMX19_03873 0.26 +0.0
120,439 - MPMX19_03873 0.26 -1.3
120,462 + MPMX19_03873 0.27 -1.9
120,462 + MPMX19_03873 0.27 -1.3
120,462 + MPMX19_03873 0.27 -2.4
120,773 + MPMX19_03873 0.51 -0.8

Or see this region's nucleotide sequence