Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03771 and MPMX19_03772 are separated by 167 nucleotides MPMX19_03772 and MPMX19_03773 overlap by 8 nucleotides
MPMX19_03771: MPMX19_03771 - hypothetical protein, at 15,639 to 15,959
_03771
MPMX19_03772: MPMX19_03772 - hypothetical protein, at 16,127 to 16,612
_03772
MPMX19_03773: MPMX19_03773 - hypothetical protein, at 16,605 to 18,788
_03773
Position (kb) 16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.472 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.478 kb on - strand at 15.623 kb on - strand at 15.649 kb on - strand at 15.762 kb on - strand, within MPMX19_03771 at 15.762 kb on - strand, within MPMX19_03771 at 15.871 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 16.333 kb on + strand, within MPMX19_03772 at 16.333 kb on + strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.136 kb on + strand, within MPMX19_03773 at 17.137 kb on - strand, within MPMX19_03773 at 17.254 kb on - strand, within MPMX19_03773 at 17.334 kb on + strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.469 kb on + strand, within MPMX19_03773 at 17.470 kb on - strand, within MPMX19_03773
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 15,472 - -1.5 15,472 - -1.3 15,472 - +1.4 15,472 - +0.3 15,472 - -0.9 15,472 - -0.6 15,472 - -1.2 15,478 - +1.2 15,478 - +0.9 15,478 - -1.2 15,478 - +0.0 15,623 - -0.1 15,649 - -0.7 15,762 - MPMX19_03771 0.38 -0.0 15,762 - MPMX19_03771 0.38 -0.5 15,871 - MPMX19_03771 0.72 +0.4 15,912 - MPMX19_03771 0.85 +0.3 15,912 - MPMX19_03771 0.85 -0.3 15,912 - MPMX19_03771 0.85 -2.7 15,912 - MPMX19_03771 0.85 -0.2 15,912 - MPMX19_03771 0.85 -2.3 15,912 - MPMX19_03771 0.85 -1.6 15,912 - MPMX19_03771 0.85 +0.6 15,912 - MPMX19_03771 0.85 -0.8 15,958 - -1.0 15,958 - -1.9 15,958 - -1.9 15,958 - +0.6 15,990 - -0.3 15,990 - -0.1 15,990 - +1.1 15,990 - +0.2 15,990 - -1.0 15,990 - -0.6 16,333 + MPMX19_03772 0.42 -0.6 16,333 + MPMX19_03772 0.42 -1.4 16,334 - MPMX19_03772 0.43 -0.2 16,334 - MPMX19_03772 0.43 -0.4 16,334 - MPMX19_03772 0.43 -1.3 16,334 - MPMX19_03772 0.43 -0.6 16,334 - MPMX19_03772 0.43 +0.1 16,334 - MPMX19_03772 0.43 -1.5 16,334 - MPMX19_03772 0.43 -1.6 16,458 - MPMX19_03772 0.68 -1.4 16,458 - MPMX19_03772 0.68 -0.4 16,458 - MPMX19_03772 0.68 +1.0 17,120 - MPMX19_03773 0.24 -3.0 17,120 - MPMX19_03773 0.24 -1.2 17,120 - MPMX19_03773 0.24 +1.6 17,120 - MPMX19_03773 0.24 -1.0 17,120 - MPMX19_03773 0.24 -0.8 17,136 + MPMX19_03773 0.24 -1.6 17,137 - MPMX19_03773 0.24 -0.5 17,254 - MPMX19_03773 0.30 -1.5 17,334 + MPMX19_03773 0.33 +0.3 17,335 - MPMX19_03773 0.33 -1.4 17,335 - MPMX19_03773 0.33 -0.4 17,335 - MPMX19_03773 0.33 -0.2 17,427 + MPMX19_03773 0.38 +0.4 17,427 + MPMX19_03773 0.38 -1.2 17,428 - MPMX19_03773 0.38 -0.0 17,428 - MPMX19_03773 0.38 +0.5 17,428 - MPMX19_03773 0.38 -2.0 17,428 - MPMX19_03773 0.38 -1.2 17,469 + MPMX19_03773 0.40 +1.8 17,470 - MPMX19_03773 0.40 +0.3
Or see this region's nucleotide sequence