Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03613

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03610 and MPMX19_03611 are separated by 18 nucleotidesMPMX19_03611 and MPMX19_03612 overlap by 4 nucleotidesMPMX19_03612 and MPMX19_03613 are separated by 92 nucleotidesMPMX19_03613 and MPMX19_03614 overlap by 1 nucleotides MPMX19_03610: MPMX19_03610 - Hexitol phosphatase A, at 1,040,382 to 1,041,047 _03610 MPMX19_03611: MPMX19_03611 - hypothetical protein, at 1,041,066 to 1,041,419 _03611 MPMX19_03612: MPMX19_03612 - hypothetical protein, at 1,041,416 to 1,041,718 _03612 MPMX19_03613: MPMX19_03613 - N-acetylglucosamine-6-phosphate deacetylase, at 1,041,811 to 1,042,971 _03613 MPMX19_03614: MPMX19_03614 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 1,042,971 to 1,044,044 _03614 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1 2at 1041.067 kb on + strandat 1041.067 kb on + strandat 1041.067 kb on + strandat 1041.067 kb on + strandat 1041.067 kb on + strandat 1041.067 kb on + strandat 1041.068 kb on - strandat 1041.068 kb on - strandat 1041.068 kb on - strandat 1041.068 kb on - strandat 1041.097 kb on + strandat 1041.097 kb on + strandat 1041.098 kb on - strandat 1041.185 kb on - strand, within MPMX19_03611at 1041.409 kb on - strandat 1041.420 kb on - strandat 1041.440 kb on - strandat 1041.440 kb on - strandat 1041.440 kb on - strandat 1041.460 kb on + strand, within MPMX19_03612at 1041.576 kb on + strand, within MPMX19_03612at 1041.576 kb on + strand, within MPMX19_03612at 1041.577 kb on - strand, within MPMX19_03612at 1041.577 kb on - strand, within MPMX19_03612at 1041.577 kb on - strand, within MPMX19_03612at 1041.577 kb on - strand, within MPMX19_03612at 1041.577 kb on - strand, within MPMX19_03612at 1041.588 kb on + strand, within MPMX19_03612at 1041.588 kb on + strand, within MPMX19_03612at 1041.589 kb on - strand, within MPMX19_03612at 1041.647 kb on + strand, within MPMX19_03612at 1041.647 kb on + strand, within MPMX19_03612at 1041.647 kb on + strand, within MPMX19_03612at 1041.647 kb on + strand, within MPMX19_03612at 1041.648 kb on - strand, within MPMX19_03612at 1041.648 kb on - strand, within MPMX19_03612at 1041.648 kb on - strand, within MPMX19_03612at 1041.648 kb on - strand, within MPMX19_03612at 1041.731 kb on + strandat 1041.731 kb on + strandat 1041.731 kb on + strandat 1041.731 kb on + strandat 1041.731 kb on + strandat 1041.732 kb on - strandat 1041.732 kb on - strandat 1041.732 kb on - strandat 1041.732 kb on - strandat 1041.732 kb on - strandat 1041.732 kb on - strandat 1041.736 kb on + strandat 1041.736 kb on + strandat 1041.736 kb on + strandat 1041.736 kb on + strandat 1041.737 kb on - strandat 1041.737 kb on - strandat 1041.737 kb on - strandat 1041.758 kb on + strandat 1041.759 kb on - strandat 1041.928 kb on + strand, within MPMX19_03613at 1041.928 kb on + strand, within MPMX19_03613at 1041.928 kb on + strand, within MPMX19_03613at 1042.079 kb on + strand, within MPMX19_03613at 1042.080 kb on - strand, within MPMX19_03613at 1042.307 kb on + strand, within MPMX19_03613at 1042.307 kb on + strand, within MPMX19_03613at 1042.307 kb on + strand, within MPMX19_03613at 1042.307 kb on + strand, within MPMX19_03613at 1042.308 kb on - strand, within MPMX19_03613at 1042.374 kb on + strand, within MPMX19_03613at 1042.374 kb on + strand, within MPMX19_03613at 1042.374 kb on + strand, within MPMX19_03613at 1042.374 kb on + strand, within MPMX19_03613at 1042.375 kb on - strand, within MPMX19_03613at 1042.375 kb on - strand, within MPMX19_03613at 1042.375 kb on - strand, within MPMX19_03613at 1042.375 kb on - strand, within MPMX19_03613at 1042.375 kb on - strand, within MPMX19_03613at 1043.044 kb on + strandat 1043.044 kb on + strandat 1043.044 kb on + strandat 1043.044 kb on + strandat 1043.044 kb on + strandat 1043.045 kb on - strandat 1043.045 kb on - strandat 1043.045 kb on - strandat 1043.045 kb on - strandat 1043.045 kb on - strandat 1043.045 kb on - strandat 1043.056 kb on + strandat 1043.056 kb on + strandat 1043.057 kb on - strandat 1043.057 kb on - strandat 1043.380 kb on + strand, within MPMX19_03614at 1043.380 kb on + strand, within MPMX19_03614at 1043.380 kb on + strand, within MPMX19_03614at 1043.380 kb on + strand, within MPMX19_03614at 1043.380 kb on + strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.381 kb on - strand, within MPMX19_03614at 1043.518 kb on + strand, within MPMX19_03614at 1043.518 kb on + strand, within MPMX19_03614at 1043.518 kb on + strand, within MPMX19_03614at 1043.518 kb on + strand, within MPMX19_03614at 1043.518 kb on + strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.519 kb on - strand, within MPMX19_03614at 1043.755 kb on + strand, within MPMX19_03614at 1043.755 kb on + strand, within MPMX19_03614at 1043.755 kb on + strand, within MPMX19_03614at 1043.755 kb on + strand, within MPMX19_03614at 1043.756 kb on - strand, within MPMX19_03614at 1043.818 kb on + strand, within MPMX19_03614at 1043.818 kb on + strand, within MPMX19_03614at 1043.818 kb on + strand, within MPMX19_03614at 1043.818 kb on + strand, within MPMX19_03614at 1043.818 kb on + strand, within MPMX19_03614at 1043.819 kb on - strand, within MPMX19_03614at 1043.819 kb on - strand, within MPMX19_03614at 1043.819 kb on - strand, within MPMX19_03614at 1043.828 kb on - strand, within MPMX19_03614at 1043.828 kb on - strand, within MPMX19_03614

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,041,067 + -1.3
1,041,067 + -0.6
1,041,067 + -1.3
1,041,067 + +0.3
1,041,067 + -0.3
1,041,067 + -1.6
1,041,068 - -0.4
1,041,068 - -0.2
1,041,068 - -0.2
1,041,068 - +1.7
1,041,097 + -1.3
1,041,097 + -0.5
1,041,098 - -1.5
1,041,185 - MPMX19_03611 0.34 -1.3
1,041,409 - -1.6
1,041,420 - +0.4
1,041,440 - -0.6
1,041,440 - +0.5
1,041,440 - +0.1
1,041,460 + MPMX19_03612 0.15 -1.5
1,041,576 + MPMX19_03612 0.53 +1.0
1,041,576 + MPMX19_03612 0.53 +0.5
1,041,577 - MPMX19_03612 0.53 -1.5
1,041,577 - MPMX19_03612 0.53 -0.7
1,041,577 - MPMX19_03612 0.53 +2.7
1,041,577 - MPMX19_03612 0.53 -0.5
1,041,577 - MPMX19_03612 0.53 -1.5
1,041,588 + MPMX19_03612 0.57 +0.5
1,041,588 + MPMX19_03612 0.57 -0.6
1,041,589 - MPMX19_03612 0.57 -1.2
1,041,647 + MPMX19_03612 0.76 -2.1
1,041,647 + MPMX19_03612 0.76 -0.3
1,041,647 + MPMX19_03612 0.76 -0.3
1,041,647 + MPMX19_03612 0.76 -1.3
1,041,648 - MPMX19_03612 0.77 -1.8
1,041,648 - MPMX19_03612 0.77 -1.9
1,041,648 - MPMX19_03612 0.77 -2.0
1,041,648 - MPMX19_03612 0.77 +0.4
1,041,731 + -1.1
1,041,731 + -0.3
1,041,731 + -0.6
1,041,731 + -1.1
1,041,731 + -1.5
1,041,732 - -0.6
1,041,732 - -0.9
1,041,732 - -0.9
1,041,732 - +0.1
1,041,732 - +0.3
1,041,732 - +0.5
1,041,736 + -0.3
1,041,736 + -1.5
1,041,736 + -1.1
1,041,736 + -1.3
1,041,737 - -0.6
1,041,737 - -0.2
1,041,737 - -0.1
1,041,758 + +0.3
1,041,759 - -0.6
1,041,928 + MPMX19_03613 0.10 +0.4
1,041,928 + MPMX19_03613 0.10 -0.9
1,041,928 + MPMX19_03613 0.10 -0.1
1,042,079 + MPMX19_03613 0.23 -0.3
1,042,080 - MPMX19_03613 0.23 +0.7
1,042,307 + MPMX19_03613 0.43 -0.5
1,042,307 + MPMX19_03613 0.43 +0.1
1,042,307 + MPMX19_03613 0.43 -0.3
1,042,307 + MPMX19_03613 0.43 -0.9
1,042,308 - MPMX19_03613 0.43 -0.6
1,042,374 + MPMX19_03613 0.48 -0.4
1,042,374 + MPMX19_03613 0.48 -1.1
1,042,374 + MPMX19_03613 0.48 -1.9
1,042,374 + MPMX19_03613 0.48 +0.4
1,042,375 - MPMX19_03613 0.49 -0.3
1,042,375 - MPMX19_03613 0.49 +0.1
1,042,375 - MPMX19_03613 0.49 +0.7
1,042,375 - MPMX19_03613 0.49 +1.7
1,042,375 - MPMX19_03613 0.49 -1.5
1,043,044 + +1.3
1,043,044 + -2.2
1,043,044 + +0.2
1,043,044 + +0.2
1,043,044 + -0.8
1,043,045 - -0.4
1,043,045 - +1.2
1,043,045 - -1.6
1,043,045 - +1.7
1,043,045 - -0.7
1,043,045 - -1.3
1,043,056 + +0.2
1,043,056 + -1.3
1,043,057 - +1.0
1,043,057 - -0.0
1,043,380 + MPMX19_03614 0.38 +0.3
1,043,380 + MPMX19_03614 0.38 -1.5
1,043,380 + MPMX19_03614 0.38 +0.9
1,043,380 + MPMX19_03614 0.38 -0.3
1,043,380 + MPMX19_03614 0.38 +0.7
1,043,381 - MPMX19_03614 0.38 -1.3
1,043,381 - MPMX19_03614 0.38 -0.5
1,043,381 - MPMX19_03614 0.38 -1.3
1,043,381 - MPMX19_03614 0.38 +0.4
1,043,381 - MPMX19_03614 0.38 -1.4
1,043,381 - MPMX19_03614 0.38 -2.2
1,043,381 - MPMX19_03614 0.38 +0.4
1,043,381 - MPMX19_03614 0.38 -0.5
1,043,518 + MPMX19_03614 0.51 -0.5
1,043,518 + MPMX19_03614 0.51 -0.5
1,043,518 + MPMX19_03614 0.51 -1.1
1,043,518 + MPMX19_03614 0.51 -0.2
1,043,518 + MPMX19_03614 0.51 -0.3
1,043,519 - MPMX19_03614 0.51 -2.0
1,043,519 - MPMX19_03614 0.51 -0.9
1,043,519 - MPMX19_03614 0.51 +0.3
1,043,519 - MPMX19_03614 0.51 -0.9
1,043,519 - MPMX19_03614 0.51 +0.2
1,043,519 - MPMX19_03614 0.51 -1.6
1,043,519 - MPMX19_03614 0.51 -2.2
1,043,755 + MPMX19_03614 0.73 -2.4
1,043,755 + MPMX19_03614 0.73 +0.4
1,043,755 + MPMX19_03614 0.73 -1.5
1,043,755 + MPMX19_03614 0.73 +0.3
1,043,756 - MPMX19_03614 0.73 -1.0
1,043,818 + MPMX19_03614 0.79 -2.6
1,043,818 + MPMX19_03614 0.79 -1.0
1,043,818 + MPMX19_03614 0.79 +0.5
1,043,818 + MPMX19_03614 0.79 -1.3
1,043,818 + MPMX19_03614 0.79 -0.3
1,043,819 - MPMX19_03614 0.79 -0.9
1,043,819 - MPMX19_03614 0.79 -1.3
1,043,819 - MPMX19_03614 0.79 +0.7
1,043,828 - MPMX19_03614 0.80 +0.7
1,043,828 - MPMX19_03614 0.80 -0.5

Or see this region's nucleotide sequence