Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03577

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03576 and MPMX19_03577 are separated by 63 nucleotidesMPMX19_03577 and MPMX19_03578 are separated by 92 nucleotides MPMX19_03576: MPMX19_03576 - Fosmidomycin resistance protein, at 997,229 to 998,425 _03576 MPMX19_03577: MPMX19_03577 - Pyridoxine 4-dehydrogenase, at 998,489 to 999,379 _03577 MPMX19_03578: MPMX19_03578 - HTH-type transcriptional regulator PgrR, at 999,472 to 1,000,377 _03578 Position (kb) 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.925 kb on + strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.926 kb on - strand, within MPMX19_03576at 997.931 kb on + strand, within MPMX19_03576at 997.931 kb on + strand, within MPMX19_03576at 997.932 kb on - strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.952 kb on + strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.953 kb on - strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.955 kb on + strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.956 kb on - strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.964 kb on + strand, within MPMX19_03576at 997.965 kb on - strand, within MPMX19_03576at 998.141 kb on + strand, within MPMX19_03576at 998.141 kb on + strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.142 kb on - strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.222 kb on + strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.223 kb on - strand, within MPMX19_03576at 998.354 kb on + strandat 998.355 kb on - strandat 998.423 kb on + strandat 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.736 kb on + strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.737 kb on - strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.799 kb on + strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.800 kb on - strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.980 kb on + strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 998.981 kb on - strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.177 kb on + strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.178 kb on - strand, within MPMX19_03577at 999.391 kb on + strandat 999.392 kb on - strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.408 kb on + strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.409 kb on - strandat 999.431 kb on + strandat 999.432 kb on - strandat 999.432 kb on - strandat 999.827 kb on - strand, within MPMX19_03578at 999.907 kb on + strand, within MPMX19_03578at 999.991 kb on + strand, within MPMX19_03578at 999.991 kb on + strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 999.992 kb on - strand, within MPMX19_03578at 1000.223 kb on + strand, within MPMX19_03578at 1000.223 kb on + strand, within MPMX19_03578at 1000.224 kb on - strand, within MPMX19_03578at 1000.300 kb on + strandat 1000.300 kb on + strandat 1000.301 kb on - strandat 1000.303 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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997,925 + MPMX19_03576 0.58 -0.5
997,925 + MPMX19_03576 0.58 -1.1
997,925 + MPMX19_03576 0.58 -0.7
997,925 + MPMX19_03576 0.58 +0.1
997,925 + MPMX19_03576 0.58 -0.3
997,925 + MPMX19_03576 0.58 -2.7
997,925 + MPMX19_03576 0.58 +0.8
997,925 + MPMX19_03576 0.58 +1.0
997,925 + MPMX19_03576 0.58 +0.5
997,926 - MPMX19_03576 0.58 +0.7
997,926 - MPMX19_03576 0.58 -0.5
997,926 - MPMX19_03576 0.58 +0.2
997,926 - MPMX19_03576 0.58 +0.3
997,926 - MPMX19_03576 0.58 -0.4
997,926 - MPMX19_03576 0.58 -0.0
997,926 - MPMX19_03576 0.58 -1.2
997,926 - MPMX19_03576 0.58 +0.3
997,926 - MPMX19_03576 0.58 -2.6
997,931 + MPMX19_03576 0.59 -0.5
997,931 + MPMX19_03576 0.59 +0.9
997,932 - MPMX19_03576 0.59 -0.7
997,952 + MPMX19_03576 0.60 +1.2
997,952 + MPMX19_03576 0.60 -0.0
997,952 + MPMX19_03576 0.60 -1.8
997,952 + MPMX19_03576 0.60 -0.3
997,952 + MPMX19_03576 0.60 +1.7
997,953 - MPMX19_03576 0.60 +1.7
997,953 - MPMX19_03576 0.60 -2.7
997,953 - MPMX19_03576 0.60 -1.0
997,953 - MPMX19_03576 0.60 -0.8
997,953 - MPMX19_03576 0.60 +0.7
997,953 - MPMX19_03576 0.60 -0.8
997,953 - MPMX19_03576 0.60 -0.3
997,955 + MPMX19_03576 0.61 +0.3
997,955 + MPMX19_03576 0.61 -0.5
997,955 + MPMX19_03576 0.61 -2.4
997,955 + MPMX19_03576 0.61 -0.2
997,955 + MPMX19_03576 0.61 +0.2
997,955 + MPMX19_03576 0.61 -0.6
997,955 + MPMX19_03576 0.61 -1.0
997,955 + MPMX19_03576 0.61 +0.1
997,955 + MPMX19_03576 0.61 -0.3
997,955 + MPMX19_03576 0.61 -1.3
997,956 - MPMX19_03576 0.61 -0.0
997,956 - MPMX19_03576 0.61 +0.0
997,956 - MPMX19_03576 0.61 -0.9
997,956 - MPMX19_03576 0.61 -1.1
997,956 - MPMX19_03576 0.61 +0.0
997,956 - MPMX19_03576 0.61 -0.6
997,956 - MPMX19_03576 0.61 +0.2
997,956 - MPMX19_03576 0.61 +0.5
997,956 - MPMX19_03576 0.61 +1.2
997,956 - MPMX19_03576 0.61 +0.7
997,956 - MPMX19_03576 0.61 -1.4
997,956 - MPMX19_03576 0.61 -2.4
997,956 - MPMX19_03576 0.61 +1.0
997,964 + MPMX19_03576 0.61 +0.7
997,964 + MPMX19_03576 0.61 +2.7
997,964 + MPMX19_03576 0.61 -0.3
997,965 - MPMX19_03576 0.61 -1.3
998,141 + MPMX19_03576 0.76 -0.3
998,141 + MPMX19_03576 0.76 -0.0
998,142 - MPMX19_03576 0.76 -1.5
998,142 - MPMX19_03576 0.76 -1.2
998,142 - MPMX19_03576 0.76 +0.2
998,142 - MPMX19_03576 0.76 -2.0
998,222 + MPMX19_03576 0.83 -1.9
998,222 + MPMX19_03576 0.83 -0.3
998,222 + MPMX19_03576 0.83 -1.5
998,222 + MPMX19_03576 0.83 -1.1
998,222 + MPMX19_03576 0.83 -1.9
998,222 + MPMX19_03576 0.83 +0.5
998,222 + MPMX19_03576 0.83 +1.0
998,223 - MPMX19_03576 0.83 -0.6
998,223 - MPMX19_03576 0.83 +0.7
998,223 - MPMX19_03576 0.83 +0.3
998,223 - MPMX19_03576 0.83 +0.1
998,223 - MPMX19_03576 0.83 -1.8
998,223 - MPMX19_03576 0.83 -0.5
998,223 - MPMX19_03576 0.83 -0.5
998,223 - MPMX19_03576 0.83 +0.2
998,223 - MPMX19_03576 0.83 -0.6
998,354 + +0.4
998,355 - -0.5
998,423 + -0.1
998,736 + MPMX19_03577 0.28 -0.3
998,736 + MPMX19_03577 0.28 +0.3
998,736 + MPMX19_03577 0.28 +0.1
998,736 + MPMX19_03577 0.28 -1.1
998,737 - MPMX19_03577 0.28 +1.4
998,737 - MPMX19_03577 0.28 -1.6
998,737 - MPMX19_03577 0.28 +0.4
998,737 - MPMX19_03577 0.28 -2.1
998,737 - MPMX19_03577 0.28 -1.3
998,737 - MPMX19_03577 0.28 -0.7
998,737 - MPMX19_03577 0.28 -1.3
998,737 - MPMX19_03577 0.28 +0.1
998,737 - MPMX19_03577 0.28 -3.6
998,737 - MPMX19_03577 0.28 +0.3
998,737 - MPMX19_03577 0.28 -0.1
998,737 - MPMX19_03577 0.28 +0.3
998,737 - MPMX19_03577 0.28 -1.2
998,799 + MPMX19_03577 0.35 +0.6
998,799 + MPMX19_03577 0.35 -2.5
998,799 + MPMX19_03577 0.35 -1.5
998,800 - MPMX19_03577 0.35 -0.9
998,800 - MPMX19_03577 0.35 -0.6
998,800 - MPMX19_03577 0.35 -0.5
998,980 + MPMX19_03577 0.55 -1.3
998,980 + MPMX19_03577 0.55 +1.4
998,980 + MPMX19_03577 0.55 -0.9
998,980 + MPMX19_03577 0.55 -1.0
998,980 + MPMX19_03577 0.55 -0.3
998,981 - MPMX19_03577 0.55 -0.9
998,981 - MPMX19_03577 0.55 -1.3
999,177 + MPMX19_03577 0.77 -1.3
999,177 + MPMX19_03577 0.77 -0.3
999,177 + MPMX19_03577 0.77 +0.1
999,178 - MPMX19_03577 0.77 -0.4
999,178 - MPMX19_03577 0.77 +0.8
999,178 - MPMX19_03577 0.77 +0.0
999,178 - MPMX19_03577 0.77 -1.3
999,178 - MPMX19_03577 0.77 -1.5
999,178 - MPMX19_03577 0.77 -1.5
999,178 - MPMX19_03577 0.77 -1.4
999,178 - MPMX19_03577 0.77 -1.3
999,391 + +0.0
999,392 - +0.1
999,408 + -0.6
999,408 + -0.0
999,408 + -0.0
999,408 + -0.5
999,408 + -1.1
999,408 + +1.3
999,409 - -0.2
999,409 - +0.5
999,409 - -1.0
999,409 - -0.7
999,431 + -0.5
999,432 - -0.7
999,432 - -0.5
999,827 - MPMX19_03578 0.39 +0.7
999,907 + MPMX19_03578 0.48 +0.3
999,991 + MPMX19_03578 0.57 -1.2
999,991 + MPMX19_03578 0.57 -2.2
999,992 - MPMX19_03578 0.57 -0.7
999,992 - MPMX19_03578 0.57 -0.5
999,992 - MPMX19_03578 0.57 +1.2
1,000,223 + MPMX19_03578 0.83 -0.2
1,000,223 + MPMX19_03578 0.83 -0.8
1,000,224 - MPMX19_03578 0.83 -1.1
1,000,300 + +0.4
1,000,300 + -0.8
1,000,301 - -0.2
1,000,303 + -0.3

Or see this region's nucleotide sequence