Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03524 and MPMX19_03525 are separated by 40 nucleotides MPMX19_03525 and MPMX19_03526 overlap by 4 nucleotides MPMX19_03526 and MPMX19_03527 are separated by 57 nucleotides MPMX19_03527 and MPMX19_03528 are separated by 12 nucleotides
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805
_03525
MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704
_03526
MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388
_03527
MPMX19_03528: MPMX19_03528 - Sialic acid TRAP transporter large permease protein SiaM, at 947,401 to 948,681
_03528
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.058 kb on + strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.131 kb on - strand at 945.131 kb on - strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.167 kb on - strand at 945.304 kb on + strand at 945.304 kb on + strand at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.843 kb on + strand at 945.843 kb on + strand at 945.843 kb on + strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.705 kb on + strand at 946.706 kb on - strand at 946.722 kb on + strand at 946.722 kb on + strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.784 kb on - strand at 946.784 kb on - strand at 946.865 kb on - strand, within MPMX19_03527 at 946.981 kb on - strand, within MPMX19_03527 at 947.147 kb on - strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.203 kb on + strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.204 kb on - strand, within MPMX19_03527 at 947.349 kb on + strand at 947.349 kb on + strand at 947.350 kb on - strand at 947.350 kb on - strand at 947.464 kb on + strand at 947.465 kb on - strand at 947.683 kb on + strand, within MPMX19_03528 at 947.684 kb on - strand, within MPMX19_03528 at 947.684 kb on - strand, within MPMX19_03528
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 945,055 + MPMX19_03524 0.86 -0.6 945,055 + MPMX19_03524 0.86 +2.3 945,055 + MPMX19_03524 0.86 +0.7 945,055 + MPMX19_03524 0.86 -1.8 945,055 + MPMX19_03524 0.86 +0.7 945,056 - MPMX19_03524 0.87 -0.4 945,056 - MPMX19_03524 0.87 +0.1 945,056 - MPMX19_03524 0.87 -1.4 945,056 - MPMX19_03524 0.87 -0.3 945,056 - MPMX19_03524 0.87 +0.1 945,056 - MPMX19_03524 0.87 -1.1 945,056 - MPMX19_03524 0.87 -0.6 945,056 - MPMX19_03524 0.87 +0.5 945,056 - MPMX19_03524 0.87 -2.1 945,058 + MPMX19_03524 0.87 +0.1 945,059 - MPMX19_03524 0.87 -0.6 945,059 - MPMX19_03524 0.87 -2.0 945,130 + +0.7 945,130 + -0.9 945,130 + +0.4 945,130 + -1.3 945,130 + +0.1 945,130 + +0.4 945,130 + -0.8 945,131 - +0.4 945,131 - -0.4 945,166 + +0.7 945,166 + -1.4 945,166 + -1.4 945,166 + +1.4 945,166 + +0.1 945,166 + -0.6 945,166 + +0.4 945,166 + +0.6 945,166 + +1.4 945,166 + -0.9 945,166 + +0.9 945,166 + -1.5 945,167 - -0.3 945,304 + -0.2 945,304 + -2.5 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 -1.6 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 -1.0 945,425 + MPMX19_03525 0.15 -0.3 945,425 + MPMX19_03525 0.15 +0.4 945,425 + MPMX19_03525 0.15 -1.3 945,425 + MPMX19_03525 0.15 -1.9 945,425 + MPMX19_03525 0.15 +0.9 945,425 + MPMX19_03525 0.15 -0.1 945,425 + MPMX19_03525 0.15 -1.1 945,425 + MPMX19_03525 0.15 -0.7 945,425 + MPMX19_03525 0.15 -0.3 945,425 + MPMX19_03525 0.15 +0.7 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 -2.0 945,425 + MPMX19_03525 0.15 -0.6 945,426 - MPMX19_03525 0.16 -1.6 945,426 - MPMX19_03525 0.16 +0.7 945,426 - MPMX19_03525 0.16 -1.2 945,426 - MPMX19_03525 0.16 +0.5 945,426 - MPMX19_03525 0.16 -1.3 945,426 - MPMX19_03525 0.16 -1.8 945,426 - MPMX19_03525 0.16 -0.4 945,426 - MPMX19_03525 0.16 +0.1 945,426 - MPMX19_03525 0.16 +0.4 945,426 - MPMX19_03525 0.16 -1.5 945,426 - MPMX19_03525 0.16 +0.2 945,426 - MPMX19_03525 0.16 -0.6 945,426 - MPMX19_03525 0.16 -0.1 945,702 - MPMX19_03525 0.77 -0.9 945,702 - MPMX19_03525 0.77 -0.3 945,752 + MPMX19_03525 0.88 -1.9 945,752 + MPMX19_03525 0.88 -0.7 945,752 + MPMX19_03525 0.88 -0.9 945,752 + MPMX19_03525 0.88 -2.0 945,752 + MPMX19_03525 0.88 -0.8 945,753 - MPMX19_03525 0.88 -0.3 945,753 - MPMX19_03525 0.88 -1.5 945,753 - MPMX19_03525 0.88 -0.1 945,753 - MPMX19_03525 0.88 -0.5 945,843 + -0.9 945,843 + +0.1 945,843 + +0.2 945,844 - -0.2 945,844 - -0.1 945,844 - +0.7 945,844 - +0.5 945,844 - -0.1 945,938 - MPMX19_03526 0.15 +1.0 945,938 - MPMX19_03526 0.15 -0.5 945,938 - MPMX19_03526 0.15 +0.1 946,018 + MPMX19_03526 0.24 -0.9 946,018 + MPMX19_03526 0.24 +0.4 946,018 + MPMX19_03526 0.24 -1.6 946,019 - MPMX19_03526 0.24 +0.7 946,019 - MPMX19_03526 0.24 +1.1 946,019 - MPMX19_03526 0.24 -0.8 946,039 + MPMX19_03526 0.26 +0.2 946,039 + MPMX19_03526 0.26 -0.8 946,039 + MPMX19_03526 0.26 +1.1 946,039 + MPMX19_03526 0.26 -1.4 946,040 - MPMX19_03526 0.26 -0.8 946,040 - MPMX19_03526 0.26 -1.9 946,040 - MPMX19_03526 0.26 -1.6 946,519 + MPMX19_03526 0.79 -1.3 946,519 + MPMX19_03526 0.79 -1.4 946,520 - MPMX19_03526 0.80 -1.1 946,520 - MPMX19_03526 0.80 -0.4 946,705 + -1.9 946,706 - -0.9 946,722 + +0.2 946,722 + -0.2 946,723 - -0.5 946,723 - +0.8 946,723 - -0.8 946,723 - +0.1 946,728 + -2.9 946,728 + -1.5 946,728 + +1.5 946,728 + +0.4 946,728 + -0.7 946,728 + -1.1 946,728 + +0.6 946,728 + -0.9 946,728 + -1.0 946,728 + -1.1 946,728 + -1.7 946,729 - -0.1 946,729 - -0.9 946,729 - +0.0 946,729 - +0.1 946,729 - -0.9 946,729 - -0.9 946,729 - -0.3 946,729 - +0.2 946,729 - +1.0 946,729 - -0.4 946,783 + +0.2 946,783 + -0.2 946,783 + +0.1 946,783 + -3.0 946,783 + -1.5 946,783 + -0.3 946,784 - -0.6 946,784 - -0.7 946,865 - MPMX19_03527 0.16 -0.1 946,981 - MPMX19_03527 0.35 -0.6 947,147 - MPMX19_03527 0.61 -0.0 947,203 + MPMX19_03527 0.70 -0.9 947,203 + MPMX19_03527 0.70 -0.3 947,203 + MPMX19_03527 0.70 -0.5 947,203 + MPMX19_03527 0.70 +0.1 947,203 + MPMX19_03527 0.70 -0.1 947,203 + MPMX19_03527 0.70 -0.1 947,204 - MPMX19_03527 0.70 +0.3 947,204 - MPMX19_03527 0.70 -0.9 947,204 - MPMX19_03527 0.70 -0.5 947,204 - MPMX19_03527 0.70 -0.2 947,204 - MPMX19_03527 0.70 -1.0 947,204 - MPMX19_03527 0.70 +0.9 947,349 + -0.6 947,349 + -1.4 947,350 - -1.8 947,350 - +0.0 947,464 + +1.0 947,465 - -0.7 947,683 + MPMX19_03528 0.22 +0.5 947,684 - MPMX19_03528 0.22 -1.5 947,684 - MPMX19_03528 0.22 +0.1
Or see this region's nucleotide sequence