Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03523

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03522 and MPMX19_03523 are separated by 96 nucleotidesMPMX19_03523 and MPMX19_03524 are separated by 355 nucleotides MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467 _03522 MPMX19_03523: MPMX19_03523 - hypothetical protein, at 942,564 to 943,028 _03523 MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315 _03524 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2at 941.613 kb on - strand, within MPMX19_03522at 941.751 kb on + strand, within MPMX19_03522at 941.751 kb on + strand, within MPMX19_03522at 941.751 kb on + strand, within MPMX19_03522at 941.751 kb on + strand, within MPMX19_03522at 941.751 kb on + strand, within MPMX19_03522at 941.752 kb on - strand, within MPMX19_03522at 941.955 kb on + strand, within MPMX19_03522at 941.955 kb on + strand, within MPMX19_03522at 941.955 kb on + strand, within MPMX19_03522at 941.955 kb on + strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 941.956 kb on - strand, within MPMX19_03522at 942.015 kb on + strand, within MPMX19_03522at 942.015 kb on + strand, within MPMX19_03522at 942.015 kb on + strand, within MPMX19_03522at 942.015 kb on + strand, within MPMX19_03522at 942.016 kb on - strand, within MPMX19_03522at 942.024 kb on + strand, within MPMX19_03522at 942.024 kb on + strand, within MPMX19_03522at 942.024 kb on + strand, within MPMX19_03522at 942.025 kb on - strand, within MPMX19_03522at 942.025 kb on - strand, within MPMX19_03522at 942.060 kb on + strand, within MPMX19_03522at 942.060 kb on + strand, within MPMX19_03522at 942.060 kb on + strand, within MPMX19_03522at 942.060 kb on + strand, within MPMX19_03522at 942.061 kb on - strand, within MPMX19_03522at 942.061 kb on - strand, within MPMX19_03522at 942.294 kb on + strandat 942.295 kb on - strandat 942.295 kb on - strandat 942.295 kb on - strandat 942.295 kb on - strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.357 kb on + strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.358 kb on - strandat 942.534 kb on - strandat 942.559 kb on + strandat 942.559 kb on + strandat 942.559 kb on + strandat 942.559 kb on + strandat 942.559 kb on + strandat 942.559 kb on + strandat 942.560 kb on - strandat 942.560 kb on - strandat 942.673 kb on - strand, within MPMX19_03523at 942.673 kb on - strand, within MPMX19_03523at 942.674 kb on + strand, within MPMX19_03523at 942.674 kb on + strand, within MPMX19_03523at 942.675 kb on - strand, within MPMX19_03523at 942.675 kb on - strand, within MPMX19_03523at 942.826 kb on - strand, within MPMX19_03523at 942.826 kb on - strand, within MPMX19_03523at 942.831 kb on + strand, within MPMX19_03523at 942.831 kb on + strand, within MPMX19_03523at 942.832 kb on - strand, within MPMX19_03523at 942.832 kb on - strand, within MPMX19_03523at 942.861 kb on + strand, within MPMX19_03523at 942.862 kb on - strand, within MPMX19_03523at 943.124 kb on - strandat 943.137 kb on + strandat 943.137 kb on + strandat 943.137 kb on + strandat 943.138 kb on - strandat 943.163 kb on + strandat 943.163 kb on + strandat 943.163 kb on + strandat 943.163 kb on + strandat 943.163 kb on + strandat 943.164 kb on - strandat 943.164 kb on - strandat 943.164 kb on - strandat 943.164 kb on - strandat 943.199 kb on - strandat 943.215 kb on + strandat 943.243 kb on + strandat 943.244 kb on - strandat 943.354 kb on - strandat 943.354 kb on - strandat 943.354 kb on - strandat 943.401 kb on + strandat 943.401 kb on + strandat 943.402 kb on - strandat 943.801 kb on + strand, within MPMX19_03524at 943.802 kb on - strand, within MPMX19_03524

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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941,613 - MPMX19_03522 0.59 +0.8
941,751 + MPMX19_03522 0.66 +0.1
941,751 + MPMX19_03522 0.66 +0.2
941,751 + MPMX19_03522 0.66 +1.2
941,751 + MPMX19_03522 0.66 -1.0
941,751 + MPMX19_03522 0.66 -1.2
941,752 - MPMX19_03522 0.66 -1.3
941,955 + MPMX19_03522 0.76 -1.6
941,955 + MPMX19_03522 0.76 -0.5
941,955 + MPMX19_03522 0.76 +0.1
941,955 + MPMX19_03522 0.76 -0.7
941,956 - MPMX19_03522 0.76 +0.4
941,956 - MPMX19_03522 0.76 +1.7
941,956 - MPMX19_03522 0.76 -2.2
941,956 - MPMX19_03522 0.76 +0.1
941,956 - MPMX19_03522 0.76 +1.4
941,956 - MPMX19_03522 0.76 -1.1
942,015 + MPMX19_03522 0.78 -0.1
942,015 + MPMX19_03522 0.78 -0.8
942,015 + MPMX19_03522 0.78 +1.0
942,015 + MPMX19_03522 0.78 -2.1
942,016 - MPMX19_03522 0.78 +2.0
942,024 + MPMX19_03522 0.79 +0.5
942,024 + MPMX19_03522 0.79 -0.3
942,024 + MPMX19_03522 0.79 -0.8
942,025 - MPMX19_03522 0.79 -0.9
942,025 - MPMX19_03522 0.79 +1.4
942,060 + MPMX19_03522 0.81 -0.5
942,060 + MPMX19_03522 0.81 -0.1
942,060 + MPMX19_03522 0.81 -1.1
942,060 + MPMX19_03522 0.81 +1.4
942,061 - MPMX19_03522 0.81 -1.3
942,061 - MPMX19_03522 0.81 -0.3
942,294 + -1.5
942,295 - -0.8
942,295 - +0.1
942,295 - -1.9
942,295 - -1.3
942,357 + -0.4
942,357 + -0.0
942,357 + +0.9
942,357 + +0.9
942,357 + +1.3
942,357 + -2.4
942,357 + -0.5
942,357 + -1.4
942,357 + -1.4
942,357 + +0.7
942,357 + -1.8
942,357 + -1.3
942,357 + +0.3
942,357 + -0.0
942,357 + -0.4
942,357 + +0.2
942,357 + +1.0
942,357 + +0.7
942,357 + -0.2
942,357 + +0.0
942,357 + -0.9
942,357 + -1.8
942,358 - -0.4
942,358 - +0.2
942,358 - -1.5
942,358 - -1.5
942,358 - +0.4
942,358 - -0.0
942,358 - -0.7
942,358 - -1.0
942,358 - -2.2
942,534 - -0.4
942,559 + -0.6
942,559 + -0.8
942,559 + +1.0
942,559 + -0.4
942,559 + -1.1
942,559 + -1.1
942,560 - -1.1
942,560 - -1.5
942,673 - MPMX19_03523 0.23 -0.5
942,673 - MPMX19_03523 0.23 +1.1
942,674 + MPMX19_03523 0.24 +0.4
942,674 + MPMX19_03523 0.24 -0.7
942,675 - MPMX19_03523 0.24 -2.4
942,675 - MPMX19_03523 0.24 +0.3
942,826 - MPMX19_03523 0.56 -0.1
942,826 - MPMX19_03523 0.56 -0.9
942,831 + MPMX19_03523 0.57 -0.3
942,831 + MPMX19_03523 0.57 +0.2
942,832 - MPMX19_03523 0.58 +1.4
942,832 - MPMX19_03523 0.58 +0.8
942,861 + MPMX19_03523 0.64 +0.7
942,862 - MPMX19_03523 0.64 +0.3
943,124 - -1.7
943,137 + +0.1
943,137 + +0.4
943,137 + -0.3
943,138 - -1.9
943,163 + -2.6
943,163 + +1.1
943,163 + +1.7
943,163 + -1.2
943,163 + +0.9
943,164 - -0.4
943,164 - -1.4
943,164 - -0.8
943,164 - +0.3
943,199 - -0.8
943,215 + -0.0
943,243 + -0.1
943,244 - -0.6
943,354 - +0.1
943,354 - -0.6
943,354 - +0.2
943,401 + +0.4
943,401 + -2.3
943,402 - -1.0
943,801 + MPMX19_03524 0.22 -0.5
943,802 - MPMX19_03524 0.22 -0.9

Or see this region's nucleotide sequence