Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03518 and MPMX19_03519 are separated by 176 nucleotides MPMX19_03519 and MPMX19_03520 are separated by 155 nucleotides
MPMX19_03518: MPMX19_03518 - Formate dehydrogenase H, at 935,849 to 938,020
_03518
MPMX19_03519: MPMX19_03519 - Hydrogenase maturation factor HybF, at 938,197 to 938,439
_03519
MPMX19_03520: MPMX19_03520 - Hydrogen peroxide-inducible genes activator, at 938,595 to 939,494
_03520
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.246 kb on + strand, within MPMX19_03518 at 937.246 kb on + strand, within MPMX19_03518 at 937.247 kb on - strand, within MPMX19_03518 at 937.320 kb on - strand, within MPMX19_03518 at 937.331 kb on + strand, within MPMX19_03518 at 937.331 kb on + strand, within MPMX19_03518 at 937.332 kb on - strand, within MPMX19_03518 at 937.332 kb on - strand, within MPMX19_03518 at 937.339 kb on + strand, within MPMX19_03518 at 937.339 kb on + strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.340 kb on - strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.385 kb on + strand, within MPMX19_03518 at 937.386 kb on - strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.466 kb on + strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.467 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.473 kb on - strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.601 kb on + strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.602 kb on - strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.664 kb on + strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.665 kb on - strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.796 kb on + strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.797 kb on - strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.798 kb on + strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.799 kb on - strand, within MPMX19_03518 at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.805 kb on + strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.806 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.883 kb on + strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.884 kb on - strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.934 kb on + strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.935 kb on - strand at 937.949 kb on + strand at 938.013 kb on - strand at 938.013 kb on - strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.065 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.313 kb on - strand, within MPMX19_03519 at 938.443 kb on + strand at 938.443 kb on + strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.444 kb on - strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.459 kb on + strand at 938.460 kb on - strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.508 kb on + strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.509 kb on - strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.547 kb on + strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.548 kb on - strand at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.084 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 937,246 + MPMX19_03518 0.64 -0.3 937,246 + MPMX19_03518 0.64 -1.1 937,247 - MPMX19_03518 0.64 -0.8 937,320 - MPMX19_03518 0.68 -1.1 937,331 + MPMX19_03518 0.68 -0.9 937,331 + MPMX19_03518 0.68 -0.9 937,332 - MPMX19_03518 0.68 +0.7 937,332 - MPMX19_03518 0.68 -0.3 937,339 + MPMX19_03518 0.69 -0.1 937,339 + MPMX19_03518 0.69 -1.8 937,340 - MPMX19_03518 0.69 +0.2 937,340 - MPMX19_03518 0.69 +1.3 937,340 - MPMX19_03518 0.69 -0.3 937,385 + MPMX19_03518 0.71 +0.5 937,385 + MPMX19_03518 0.71 -1.0 937,385 + MPMX19_03518 0.71 -0.1 937,386 - MPMX19_03518 0.71 -1.5 937,466 + MPMX19_03518 0.74 +0.1 937,466 + MPMX19_03518 0.74 -1.3 937,466 + MPMX19_03518 0.74 +0.2 937,466 + MPMX19_03518 0.74 -1.3 937,467 - MPMX19_03518 0.74 -0.6 937,467 - MPMX19_03518 0.74 +0.1 937,467 - MPMX19_03518 0.74 -2.3 937,467 - MPMX19_03518 0.74 -0.4 937,467 - MPMX19_03518 0.74 -0.6 937,467 - MPMX19_03518 0.74 +0.1 937,467 - MPMX19_03518 0.74 -0.9 937,467 - MPMX19_03518 0.74 +0.7 937,473 - MPMX19_03518 0.75 -0.6 937,473 - MPMX19_03518 0.75 +0.4 937,473 - MPMX19_03518 0.75 +0.4 937,601 + MPMX19_03518 0.81 -0.3 937,601 + MPMX19_03518 0.81 -1.3 937,601 + MPMX19_03518 0.81 -1.9 937,601 + MPMX19_03518 0.81 -1.3 937,602 - MPMX19_03518 0.81 +0.5 937,602 - MPMX19_03518 0.81 -0.9 937,602 - MPMX19_03518 0.81 +0.3 937,602 - MPMX19_03518 0.81 +1.1 937,664 + MPMX19_03518 0.84 -0.7 937,664 + MPMX19_03518 0.84 +0.2 937,664 + MPMX19_03518 0.84 -1.3 937,665 - MPMX19_03518 0.84 -2.0 937,665 - MPMX19_03518 0.84 -1.4 937,665 - MPMX19_03518 0.84 +1.7 937,665 - MPMX19_03518 0.84 -1.6 937,665 - MPMX19_03518 0.84 -1.0 937,665 - MPMX19_03518 0.84 -0.2 937,665 - MPMX19_03518 0.84 -0.1 937,796 + MPMX19_03518 0.90 -1.3 937,796 + MPMX19_03518 0.90 +0.1 937,796 + MPMX19_03518 0.90 +0.5 937,796 + MPMX19_03518 0.90 -0.5 937,796 + MPMX19_03518 0.90 -1.8 937,796 + MPMX19_03518 0.90 +0.9 937,796 + MPMX19_03518 0.90 +0.7 937,796 + MPMX19_03518 0.90 -1.5 937,796 + MPMX19_03518 0.90 -0.7 937,797 - MPMX19_03518 0.90 -1.1 937,797 - MPMX19_03518 0.90 -0.4 937,797 - MPMX19_03518 0.90 +0.4 937,797 - MPMX19_03518 0.90 +0.7 937,797 - MPMX19_03518 0.90 -0.6 937,797 - MPMX19_03518 0.90 -1.1 937,797 - MPMX19_03518 0.90 -0.1 937,797 - MPMX19_03518 0.90 -0.9 937,797 - MPMX19_03518 0.90 -0.4 937,797 - MPMX19_03518 0.90 +0.5 937,797 - MPMX19_03518 0.90 -0.9 937,797 - MPMX19_03518 0.90 -0.5 937,797 - MPMX19_03518 0.90 -0.0 937,797 - MPMX19_03518 0.90 -1.8 937,798 + MPMX19_03518 0.90 -0.9 937,798 + MPMX19_03518 0.90 -3.4 937,798 + MPMX19_03518 0.90 -0.2 937,798 + MPMX19_03518 0.90 -0.5 937,798 + MPMX19_03518 0.90 -0.1 937,798 + MPMX19_03518 0.90 -1.3 937,799 - MPMX19_03518 0.90 +0.7 937,799 - MPMX19_03518 0.90 -1.9 937,799 - MPMX19_03518 0.90 +1.0 937,799 - MPMX19_03518 0.90 -0.2 937,799 - MPMX19_03518 0.90 -1.2 937,799 - MPMX19_03518 0.90 -1.3 937,799 - MPMX19_03518 0.90 -0.4 937,805 + +0.6 937,805 + +0.1 937,805 + -1.6 937,805 + +0.7 937,806 - +0.2 937,806 - -1.3 937,806 - -1.4 937,806 - -2.0 937,806 - -0.5 937,806 - -0.6 937,878 - -0.8 937,878 - +0.0 937,883 + -0.8 937,883 + -0.6 937,883 + +0.1 937,884 - +0.2 937,884 - -0.2 937,884 - -1.6 937,884 - -0.1 937,884 - -0.6 937,884 - +0.8 937,884 - -2.3 937,934 + -0.4 937,934 + -2.3 937,934 + +2.5 937,934 + -0.3 937,934 + -1.0 937,935 - -0.4 937,935 - -0.1 937,935 - +0.3 937,935 - -1.3 937,935 - -0.3 937,935 - -0.5 937,949 + -0.3 938,013 - -1.2 938,013 - -0.2 938,065 + -1.5 938,065 + -1.9 938,065 + +0.2 938,065 + -0.1 938,065 + -1.8 938,065 + -0.3 938,065 + +0.7 938,065 + -1.1 938,065 + -0.9 938,065 + +0.7 938,065 + -1.5 938,065 + -0.1 938,123 - -0.6 938,123 - -0.9 938,123 - -0.8 938,313 - MPMX19_03519 0.48 -0.1 938,443 + +0.5 938,443 + -0.0 938,444 - -0.1 938,444 - +0.3 938,444 - -1.4 938,459 + -0.3 938,459 + -2.3 938,459 + -2.1 938,460 - -0.0 938,508 + -2.0 938,508 + -2.0 938,508 + -1.3 938,508 + -2.1 938,508 + -0.9 938,508 + +0.3 938,508 + -2.0 938,508 + -1.4 938,508 + -1.3 938,508 + -1.8 938,508 + -0.7 938,508 + -1.4 938,508 + -1.8 938,508 + -2.6 938,508 + -0.5 938,509 - +0.2 938,509 - +0.6 938,509 - -1.9 938,509 - +0.7 938,509 - -0.8 938,509 - -0.4 938,509 - -1.5 938,509 - -0.1 938,509 - -0.6 938,509 - -1.3 938,509 - -1.3 938,509 - +0.0 938,509 - -1.9 938,509 - -0.1 938,509 - -0.7 938,547 + -0.9 938,547 + +1.7 938,547 + +0.1 938,548 - -0.8 938,548 - -0.6 938,548 - -1.8 938,548 - -0.3 938,548 - -0.0 938,548 - -1.2 938,548 - -0.5 938,548 - -3.2 938,814 + MPMX19_03520 0.24 +1.0 938,814 + MPMX19_03520 0.24 -0.8 938,814 + MPMX19_03520 0.24 -0.5 938,814 + MPMX19_03520 0.24 -0.5 938,815 - MPMX19_03520 0.24 +0.5 938,815 - MPMX19_03520 0.24 -1.5 939,027 + MPMX19_03520 0.48 +0.6 939,027 + MPMX19_03520 0.48 +0.4 939,027 + MPMX19_03520 0.48 -0.2 939,027 + MPMX19_03520 0.48 +0.5 939,027 + MPMX19_03520 0.48 +0.2 939,027 + MPMX19_03520 0.48 -0.6 939,028 - MPMX19_03520 0.48 +0.4 939,028 - MPMX19_03520 0.48 +2.2 939,028 - MPMX19_03520 0.48 +1.7 939,028 - MPMX19_03520 0.48 -1.8 939,028 - MPMX19_03520 0.48 -1.5 939,028 - MPMX19_03520 0.48 -0.8 939,028 - MPMX19_03520 0.48 -0.4 939,073 - MPMX19_03520 0.53 -2.3 939,073 - MPMX19_03520 0.53 -1.5 939,084 + MPMX19_03520 0.54 +0.4 939,293 + MPMX19_03520 0.78 -0.7 939,293 + MPMX19_03520 0.78 -0.8
Or see this region's nucleotide sequence