Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03489

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03488 and MPMX19_03489 are separated by 16 nucleotidesMPMX19_03489 and MPMX19_03490 are separated by 94 nucleotides MPMX19_03488: MPMX19_03488 - hypothetical protein, at 900,325 to 902,097 _03488 MPMX19_03489: MPMX19_03489 - Spermidine/putrescine import ATP-binding protein PotA, at 902,114 to 903,241 _03489 MPMX19_03490: MPMX19_03490 - hypothetical protein, at 903,336 to 904,418 _03490 Position (kb) 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 901.265 kb on + strand, within MPMX19_03488at 901.265 kb on + strand, within MPMX19_03488at 901.265 kb on + strand, within MPMX19_03488at 901.266 kb on - strand, within MPMX19_03488at 901.266 kb on - strand, within MPMX19_03488at 901.413 kb on - strand, within MPMX19_03488at 901.481 kb on + strand, within MPMX19_03488at 901.481 kb on + strand, within MPMX19_03488at 901.635 kb on - strand, within MPMX19_03488at 901.635 kb on - strand, within MPMX19_03488at 901.635 kb on - strand, within MPMX19_03488at 901.814 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.895 kb on + strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.896 kb on - strand, within MPMX19_03488at 901.923 kb on - strandat 901.952 kb on + strandat 901.953 kb on - strandat 901.953 kb on - strandat 902.162 kb on + strandat 902.284 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.286 kb on + strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.287 kb on - strand, within MPMX19_03489at 902.571 kb on + strand, within MPMX19_03489at 902.571 kb on + strand, within MPMX19_03489at 902.571 kb on + strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.670 kb on + strand, within MPMX19_03489at 902.671 kb on - strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.358 kb on + strandat 903.358 kb on + strandat 903.359 kb on - strandat 903.359 kb on - strandat 903.359 kb on - strandat 903.394 kb on + strandat 903.394 kb on + strandat 903.395 kb on - strandat 903.395 kb on - strandat 903.395 kb on - strandat 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.973 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.992 kb on - strand, within MPMX19_03490at 904.012 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.148 kb on - strand, within MPMX19_03490

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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901,265 + MPMX19_03488 0.53 -1.4
901,265 + MPMX19_03488 0.53 -0.3
901,265 + MPMX19_03488 0.53 +1.2
901,266 - MPMX19_03488 0.53 -1.9
901,266 - MPMX19_03488 0.53 -1.2
901,413 - MPMX19_03488 0.61 -2.0
901,481 + MPMX19_03488 0.65 -1.1
901,481 + MPMX19_03488 0.65 -1.2
901,635 - MPMX19_03488 0.74 +0.7
901,635 - MPMX19_03488 0.74 -0.2
901,635 - MPMX19_03488 0.74 -0.6
901,814 + MPMX19_03488 0.84 -0.8
901,895 + MPMX19_03488 0.89 -0.8
901,895 + MPMX19_03488 0.89 -1.0
901,895 + MPMX19_03488 0.89 +2.3
901,895 + MPMX19_03488 0.89 -1.3
901,895 + MPMX19_03488 0.89 -0.5
901,895 + MPMX19_03488 0.89 -1.1
901,895 + MPMX19_03488 0.89 -0.5
901,895 + MPMX19_03488 0.89 +0.7
901,895 + MPMX19_03488 0.89 -0.0
901,896 - MPMX19_03488 0.89 -0.3
901,896 - MPMX19_03488 0.89 -0.9
901,896 - MPMX19_03488 0.89 -0.1
901,896 - MPMX19_03488 0.89 -2.6
901,896 - MPMX19_03488 0.89 -0.2
901,896 - MPMX19_03488 0.89 -0.3
901,923 - -1.3
901,952 + +0.4
901,953 - -0.1
901,953 - +0.5
902,162 + +0.2
902,284 + MPMX19_03489 0.15 -1.9
902,286 + MPMX19_03489 0.15 +0.4
902,286 + MPMX19_03489 0.15 -0.4
902,286 + MPMX19_03489 0.15 +0.7
902,286 + MPMX19_03489 0.15 -0.0
902,286 + MPMX19_03489 0.15 -1.3
902,286 + MPMX19_03489 0.15 -0.6
902,286 + MPMX19_03489 0.15 -0.1
902,286 + MPMX19_03489 0.15 +0.2
902,286 + MPMX19_03489 0.15 +0.0
902,286 + MPMX19_03489 0.15 -0.1
902,286 + MPMX19_03489 0.15 +1.7
902,286 + MPMX19_03489 0.15 -2.1
902,286 + MPMX19_03489 0.15 -0.5
902,286 + MPMX19_03489 0.15 -1.5
902,286 + MPMX19_03489 0.15 -0.1
902,286 + MPMX19_03489 0.15 -0.0
902,286 + MPMX19_03489 0.15 +0.0
902,286 + MPMX19_03489 0.15 -0.3
902,286 + MPMX19_03489 0.15 +0.7
902,287 - MPMX19_03489 0.15 -0.3
902,287 - MPMX19_03489 0.15 -1.6
902,287 - MPMX19_03489 0.15 +0.5
902,287 - MPMX19_03489 0.15 +0.1
902,287 - MPMX19_03489 0.15 +1.3
902,287 - MPMX19_03489 0.15 -0.2
902,287 - MPMX19_03489 0.15 -0.5
902,287 - MPMX19_03489 0.15 -1.7
902,571 + MPMX19_03489 0.41 -0.5
902,571 + MPMX19_03489 0.41 -0.6
902,571 + MPMX19_03489 0.41 -1.2
902,572 - MPMX19_03489 0.41 +0.7
902,572 - MPMX19_03489 0.41 -1.8
902,572 - MPMX19_03489 0.41 -0.6
902,670 + MPMX19_03489 0.49 -1.0
902,671 - MPMX19_03489 0.49 -0.1
902,787 + MPMX19_03489 0.60 +1.2
902,787 + MPMX19_03489 0.60 +0.7
902,787 + MPMX19_03489 0.60 +0.1
902,787 + MPMX19_03489 0.60 +0.1
902,787 + MPMX19_03489 0.60 -0.6
902,788 - MPMX19_03489 0.60 +0.4
902,788 - MPMX19_03489 0.60 +0.4
902,788 - MPMX19_03489 0.60 -0.9
902,788 - MPMX19_03489 0.60 -0.9
902,788 - MPMX19_03489 0.60 -0.0
902,788 - MPMX19_03489 0.60 -0.1
902,985 + MPMX19_03489 0.77 -2.1
902,985 + MPMX19_03489 0.77 -1.0
902,985 + MPMX19_03489 0.77 -1.3
902,985 + MPMX19_03489 0.77 -0.0
902,985 + MPMX19_03489 0.77 -0.9
902,985 + MPMX19_03489 0.77 -0.6
902,985 + MPMX19_03489 0.77 -0.9
902,986 - MPMX19_03489 0.77 +0.2
902,986 - MPMX19_03489 0.77 +0.5
902,986 - MPMX19_03489 0.77 +1.1
902,986 - MPMX19_03489 0.77 -1.8
902,986 - MPMX19_03489 0.77 -0.3
902,986 - MPMX19_03489 0.77 -0.6
902,986 - MPMX19_03489 0.77 -2.6
902,986 - MPMX19_03489 0.77 -0.7
902,986 - MPMX19_03489 0.77 -0.4
902,986 - MPMX19_03489 0.77 -0.8
903,018 + MPMX19_03489 0.80 +0.2
903,018 + MPMX19_03489 0.80 -0.3
903,018 + MPMX19_03489 0.80 -0.7
903,019 - MPMX19_03489 0.80 -0.5
903,019 - MPMX19_03489 0.80 +0.7
903,019 - MPMX19_03489 0.80 -1.1
903,030 + MPMX19_03489 0.81 -0.0
903,030 + MPMX19_03489 0.81 -0.7
903,030 + MPMX19_03489 0.81 -0.0
903,030 + MPMX19_03489 0.81 -0.2
903,031 - MPMX19_03489 0.81 -1.5
903,031 - MPMX19_03489 0.81 +0.1
903,031 - MPMX19_03489 0.81 -1.5
903,031 - MPMX19_03489 0.81 -1.4
903,358 + -0.5
903,358 + -1.7
903,359 - -1.6
903,359 - +0.4
903,359 - +0.5
903,394 + -0.1
903,394 + -1.0
903,395 - -2.0
903,395 - -0.4
903,395 - -2.1
903,511 + MPMX19_03490 0.16 +0.0
903,511 + MPMX19_03490 0.16 -0.3
903,511 + MPMX19_03490 0.16 -0.9
903,512 - MPMX19_03490 0.16 -1.5
903,512 - MPMX19_03490 0.16 -0.3
903,817 + MPMX19_03490 0.44 -0.6
903,817 + MPMX19_03490 0.44 +0.1
903,818 - MPMX19_03490 0.45 -0.5
903,818 - MPMX19_03490 0.45 -0.5
903,818 - MPMX19_03490 0.45 +0.1
903,818 - MPMX19_03490 0.45 -0.8
903,919 + MPMX19_03490 0.54 +0.1
903,919 + MPMX19_03490 0.54 -1.8
903,919 + MPMX19_03490 0.54 -1.3
903,919 + MPMX19_03490 0.54 -0.7
903,919 + MPMX19_03490 0.54 -0.5
903,920 - MPMX19_03490 0.54 -1.0
903,920 - MPMX19_03490 0.54 +0.5
903,973 + MPMX19_03490 0.59 +0.5
903,991 + MPMX19_03490 0.60 +0.5
903,991 + MPMX19_03490 0.60 -0.4
903,991 + MPMX19_03490 0.60 -1.3
903,992 - MPMX19_03490 0.61 +1.8
904,012 + MPMX19_03490 0.62 +2.0
904,024 + MPMX19_03490 0.64 -0.0
904,024 + MPMX19_03490 0.64 +0.2
904,024 + MPMX19_03490 0.64 -0.9
904,024 + MPMX19_03490 0.64 +0.4
904,024 + MPMX19_03490 0.64 -2.0
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 -2.6
904,024 + MPMX19_03490 0.64 -0.5
904,024 + MPMX19_03490 0.64 -0.2
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 -1.9
904,024 + MPMX19_03490 0.64 -1.2
904,024 + MPMX19_03490 0.64 +0.1
904,024 + MPMX19_03490 0.64 -0.4
904,024 + MPMX19_03490 0.64 -1.4
904,024 + MPMX19_03490 0.64 +1.1
904,024 + MPMX19_03490 0.64 +0.0
904,024 + MPMX19_03490 0.64 +0.7
904,024 + MPMX19_03490 0.64 -1.4
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 -0.4
904,025 - MPMX19_03490 0.64 -1.0
904,025 - MPMX19_03490 0.64 -0.7
904,025 - MPMX19_03490 0.64 -2.4
904,025 - MPMX19_03490 0.64 +0.2
904,025 - MPMX19_03490 0.64 -0.9
904,025 - MPMX19_03490 0.64 -0.5
904,025 - MPMX19_03490 0.64 -1.8
904,025 - MPMX19_03490 0.64 -0.6
904,025 - MPMX19_03490 0.64 -0.4
904,025 - MPMX19_03490 0.64 +0.2
904,025 - MPMX19_03490 0.64 -3.0
904,025 - MPMX19_03490 0.64 +0.5
904,025 - MPMX19_03490 0.64 -1.8
904,025 - MPMX19_03490 0.64 -0.8
904,025 - MPMX19_03490 0.64 -0.8
904,025 - MPMX19_03490 0.64 +2.3
904,025 - MPMX19_03490 0.64 +0.5
904,025 - MPMX19_03490 0.64 -1.8
904,147 + MPMX19_03490 0.75 -0.6
904,147 + MPMX19_03490 0.75 +0.3
904,147 + MPMX19_03490 0.75 -0.6
904,147 + MPMX19_03490 0.75 -0.6
904,147 + MPMX19_03490 0.75 -0.8
904,147 + MPMX19_03490 0.75 +0.5
904,148 - MPMX19_03490 0.75 -0.9

Or see this region's nucleotide sequence