Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03461 and MPMX19_03462 are separated by 392 nucleotides MPMX19_03462 and MPMX19_03463 overlap by 8 nucleotides MPMX19_03463 and MPMX19_03464 are separated by 106 nucleotides
MPMX19_03461: MPMX19_03461 - Regulatory protein AtoC, at 870,498 to 871,919
_03461
MPMX19_03462: MPMX19_03462 - Acetate CoA-transferase subunit alpha, at 872,312 to 872,974
_03462
MPMX19_03463: MPMX19_03463 - Butyrate--acetoacetate CoA-transferase subunit B, at 872,967 to 873,623
_03463
MPMX19_03464: MPMX19_03464 - Putative short-chain fatty acid transporter, at 873,730 to 875,103
_03464
Position (kb)
872
873 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 871.353 kb on - strand, within MPMX19_03461 at 871.431 kb on + strand, within MPMX19_03461 at 871.432 kb on - strand, within MPMX19_03461 at 871.432 kb on - strand, within MPMX19_03461 at 871.590 kb on + strand, within MPMX19_03461 at 871.591 kb on - strand, within MPMX19_03461 at 871.591 kb on - strand, within MPMX19_03461 at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.890 kb on + strand at 871.891 kb on - strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.892 kb on + strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.893 kb on - strand at 871.905 kb on + strand at 871.906 kb on - strand at 871.930 kb on + strand at 871.930 kb on + strand at 871.931 kb on - strand at 872.103 kb on + strand at 872.104 kb on - strand at 872.114 kb on + strand at 872.114 kb on + strand at 872.115 kb on - strand at 872.116 kb on + strand at 872.317 kb on + strand at 872.318 kb on - strand at 872.318 kb on - strand at 872.729 kb on + strand, within MPMX19_03462 at 872.730 kb on + strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.730 kb on - strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.789 kb on + strand, within MPMX19_03462 at 872.790 kb on - strand, within MPMX19_03462 at 872.790 kb on - strand, within MPMX19_03462 at 873.829 kb on + strand at 873.829 kb on + strand at 873.830 kb on - strand at 873.830 kb on - strand at 873.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 871,353 - MPMX19_03461 0.60 -0.6 871,431 + MPMX19_03461 0.66 +0.3 871,432 - MPMX19_03461 0.66 -0.7 871,432 - MPMX19_03461 0.66 -1.3 871,590 + MPMX19_03461 0.77 +0.3 871,591 - MPMX19_03461 0.77 +0.1 871,591 - MPMX19_03461 0.77 -0.7 871,890 + -1.6 871,890 + -0.6 871,890 + -1.0 871,890 + -2.4 871,890 + -1.8 871,891 - +0.6 871,892 + +1.1 871,892 + -0.5 871,892 + -0.3 871,892 + +0.4 871,892 + +0.3 871,893 - -1.8 871,893 - +0.1 871,893 - -0.2 871,893 - +0.0 871,905 + +0.5 871,906 - -1.4 871,930 + -0.1 871,930 + -1.0 871,931 - +0.1 872,103 + -0.6 872,104 - -1.4 872,114 + +0.7 872,114 + -0.8 872,115 - -0.8 872,116 + -0.7 872,317 + -2.0 872,318 - -2.8 872,318 - -0.3 872,729 + MPMX19_03462 0.63 -2.4 872,730 + MPMX19_03462 0.63 +1.7 872,730 - MPMX19_03462 0.63 -0.1 872,730 - MPMX19_03462 0.63 -0.3 872,730 - MPMX19_03462 0.63 +0.5 872,789 + MPMX19_03462 0.72 -1.2 872,789 + MPMX19_03462 0.72 -0.1 872,789 + MPMX19_03462 0.72 +0.1 872,789 + MPMX19_03462 0.72 -0.5 872,789 + MPMX19_03462 0.72 -1.4 872,789 + MPMX19_03462 0.72 -0.3 872,790 - MPMX19_03462 0.72 -0.1 872,790 - MPMX19_03462 0.72 +0.0 873,829 + +0.3 873,829 + +0.3 873,830 - -0.2 873,830 - -0.3 873,830 - -0.0
Or see this region's nucleotide sequence