Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03445 and MPMX19_03446 are separated by 1 nucleotides MPMX19_03446 and MPMX19_03447 overlap by 4 nucleotides MPMX19_03447 and MPMX19_03448 are separated by 26 nucleotides
MPMX19_03445: MPMX19_03445 - hypothetical protein, at 841,471 to 842,538
_03445
MPMX19_03446: MPMX19_03446 - hypothetical protein, at 842,540 to 843,352
_03446
MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590
_03447
MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423
_03448
Position (kb) 843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 842.375 kb on + strand, within MPMX19_03445 at 842.375 kb on + strand, within MPMX19_03445 at 842.376 kb on - strand, within MPMX19_03445 at 842.383 kb on + strand, within MPMX19_03445 at 842.384 kb on - strand, within MPMX19_03445 at 842.384 kb on - strand, within MPMX19_03445 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.711 kb on + strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.712 kb on - strand, within MPMX19_03446 at 842.746 kb on + strand, within MPMX19_03446 at 842.747 kb on - strand, within MPMX19_03446 at 842.747 kb on - strand, within MPMX19_03446 at 842.981 kb on + strand, within MPMX19_03446 at 842.981 kb on + strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 842.982 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.114 kb on - strand, within MPMX19_03446 at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.272 kb on + strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.273 kb on - strand at 843.376 kb on + strand at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.478 kb on + strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.479 kb on - strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.673 kb on + strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.674 kb on - strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.823 kb on + strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.824 kb on - strand, within MPMX19_03447 at 843.925 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.943 kb on + strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.944 kb on - strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.979 kb on + strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 843.980 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.037 kb on - strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.042 kb on + strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.043 kb on - strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.045 kb on + strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.046 kb on - strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.093 kb on + strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.094 kb on - strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.229 kb on + strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.230 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.316 kb on - strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.345 kb on + strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.346 kb on - strand, within MPMX19_03447 at 844.499 kb on - strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.614 kb on + strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.615 kb on - strand at 844.633 kb on - strand at 844.633 kb on - strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.688 kb on + strand at 844.689 kb on - strand at 844.689 kb on - strand at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.878 kb on + strand, within MPMX19_03448 at 844.905 kb on + strand, within MPMX19_03448 at 844.950 kb on + strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 844.951 kb on - strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.025 kb on + strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.026 kb on - strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.169 kb on + strand, within MPMX19_03448 at 845.170 kb on - strand, within MPMX19_03448 at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.357 kb on + strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.358 kb on - strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.534 kb on + strand at 845.535 kb on - strand at 845.535 kb on - strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.584 kb on + strand at 845.585 kb on - strand at 845.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 842,375 + MPMX19_03445 0.85 -1.6 842,375 + MPMX19_03445 0.85 -1.5 842,376 - MPMX19_03445 0.85 +0.2 842,383 + MPMX19_03445 0.85 -1.9 842,384 - MPMX19_03445 0.85 -0.1 842,384 - MPMX19_03445 0.85 -0.4 842,711 + MPMX19_03446 0.21 +0.7 842,711 + MPMX19_03446 0.21 -1.6 842,711 + MPMX19_03446 0.21 -1.2 842,711 + MPMX19_03446 0.21 -0.7 842,711 + MPMX19_03446 0.21 -0.7 842,711 + MPMX19_03446 0.21 +0.4 842,712 - MPMX19_03446 0.21 -0.1 842,712 - MPMX19_03446 0.21 +0.2 842,712 - MPMX19_03446 0.21 +0.3 842,712 - MPMX19_03446 0.21 -1.0 842,712 - MPMX19_03446 0.21 -0.8 842,712 - MPMX19_03446 0.21 -0.3 842,712 - MPMX19_03446 0.21 -0.6 842,746 + MPMX19_03446 0.25 -0.8 842,747 - MPMX19_03446 0.25 -0.5 842,747 - MPMX19_03446 0.25 -0.6 842,981 + MPMX19_03446 0.54 -0.6 842,981 + MPMX19_03446 0.54 +0.1 842,982 - MPMX19_03446 0.54 -0.8 842,982 - MPMX19_03446 0.54 -1.6 842,982 - MPMX19_03446 0.54 -0.9 842,982 - MPMX19_03446 0.54 -2.2 843,114 - MPMX19_03446 0.71 +1.7 843,114 - MPMX19_03446 0.71 +1.4 843,114 - MPMX19_03446 0.71 -1.5 843,272 + -0.6 843,272 + -0.9 843,272 + -0.7 843,272 + -0.1 843,272 + -1.2 843,273 - -0.2 843,273 - -1.1 843,273 - -1.1 843,273 - +0.4 843,376 + -0.9 843,478 + MPMX19_03447 0.10 +0.2 843,478 + MPMX19_03447 0.10 +0.2 843,478 + MPMX19_03447 0.10 -0.3 843,478 + MPMX19_03447 0.10 -1.8 843,478 + MPMX19_03447 0.10 -2.2 843,478 + MPMX19_03447 0.10 -1.3 843,479 - MPMX19_03447 0.10 -0.7 843,479 - MPMX19_03447 0.10 +0.7 843,479 - MPMX19_03447 0.10 -2.0 843,479 - MPMX19_03447 0.10 -1.3 843,479 - MPMX19_03447 0.10 +0.5 843,673 + MPMX19_03447 0.26 -1.1 843,673 + MPMX19_03447 0.26 -0.1 843,673 + MPMX19_03447 0.26 -0.7 843,673 + MPMX19_03447 0.26 -1.3 843,673 + MPMX19_03447 0.26 +0.5 843,673 + MPMX19_03447 0.26 -0.5 843,673 + MPMX19_03447 0.26 -0.5 843,673 + MPMX19_03447 0.26 -0.6 843,673 + MPMX19_03447 0.26 -1.8 843,673 + MPMX19_03447 0.26 +0.4 843,674 - MPMX19_03447 0.26 -0.3 843,674 - MPMX19_03447 0.26 -0.0 843,674 - MPMX19_03447 0.26 -1.5 843,674 - MPMX19_03447 0.26 +1.5 843,674 - MPMX19_03447 0.26 +0.8 843,674 - MPMX19_03447 0.26 -0.1 843,674 - MPMX19_03447 0.26 -1.1 843,674 - MPMX19_03447 0.26 -0.5 843,674 - MPMX19_03447 0.26 -0.6 843,674 - MPMX19_03447 0.26 -1.8 843,674 - MPMX19_03447 0.26 -2.2 843,823 + MPMX19_03447 0.38 +0.1 843,823 + MPMX19_03447 0.38 +0.1 843,823 + MPMX19_03447 0.38 -1.6 843,823 + MPMX19_03447 0.38 -1.5 843,823 + MPMX19_03447 0.38 -1.5 843,823 + MPMX19_03447 0.38 -0.8 843,824 - MPMX19_03447 0.38 -1.4 843,824 - MPMX19_03447 0.38 -1.3 843,824 - MPMX19_03447 0.38 -0.5 843,824 - MPMX19_03447 0.38 +0.3 843,824 - MPMX19_03447 0.38 +0.2 843,925 + MPMX19_03447 0.46 -1.2 843,943 + MPMX19_03447 0.48 -0.1 843,943 + MPMX19_03447 0.48 +1.1 843,943 + MPMX19_03447 0.48 -1.4 843,943 + MPMX19_03447 0.48 -0.6 843,943 + MPMX19_03447 0.48 +0.4 843,943 + MPMX19_03447 0.48 -0.2 843,943 + MPMX19_03447 0.48 +0.0 843,943 + MPMX19_03447 0.48 -1.6 843,943 + MPMX19_03447 0.48 -1.2 843,943 + MPMX19_03447 0.48 -3.5 843,943 + MPMX19_03447 0.48 -1.3 843,944 - MPMX19_03447 0.48 +0.4 843,944 - MPMX19_03447 0.48 +0.7 843,944 - MPMX19_03447 0.48 -1.3 843,944 - MPMX19_03447 0.48 -0.6 843,944 - MPMX19_03447 0.48 +0.6 843,944 - MPMX19_03447 0.48 -1.1 843,944 - MPMX19_03447 0.48 -0.1 843,944 - MPMX19_03447 0.48 -0.6 843,944 - MPMX19_03447 0.48 +0.5 843,944 - MPMX19_03447 0.48 +0.7 843,944 - MPMX19_03447 0.48 -0.2 843,979 + MPMX19_03447 0.51 -0.1 843,979 + MPMX19_03447 0.51 -0.2 843,979 + MPMX19_03447 0.51 +0.4 843,979 + MPMX19_03447 0.51 +0.0 843,979 + MPMX19_03447 0.51 -0.8 843,980 - MPMX19_03447 0.51 +0.5 843,980 - MPMX19_03447 0.51 +0.1 844,037 - MPMX19_03447 0.55 -0.6 844,037 - MPMX19_03447 0.55 -1.8 844,037 - MPMX19_03447 0.55 +0.1 844,042 + MPMX19_03447 0.56 -0.4 844,042 + MPMX19_03447 0.56 +0.8 844,042 + MPMX19_03447 0.56 +0.6 844,043 - MPMX19_03447 0.56 -0.9 844,043 - MPMX19_03447 0.56 +1.1 844,043 - MPMX19_03447 0.56 -1.3 844,043 - MPMX19_03447 0.56 -0.0 844,043 - MPMX19_03447 0.56 -0.5 844,043 - MPMX19_03447 0.56 -1.0 844,043 - MPMX19_03447 0.56 -1.3 844,043 - MPMX19_03447 0.56 -0.6 844,043 - MPMX19_03447 0.56 -1.1 844,043 - MPMX19_03447 0.56 -1.5 844,045 + MPMX19_03447 0.56 +0.1 844,045 + MPMX19_03447 0.56 -0.3 844,045 + MPMX19_03447 0.56 -0.0 844,046 - MPMX19_03447 0.56 -1.9 844,046 - MPMX19_03447 0.56 -1.6 844,093 + MPMX19_03447 0.60 +0.4 844,093 + MPMX19_03447 0.60 -1.5 844,093 + MPMX19_03447 0.60 -0.3 844,093 + MPMX19_03447 0.60 -1.2 844,093 + MPMX19_03447 0.60 -1.6 844,093 + MPMX19_03447 0.60 -1.3 844,094 - MPMX19_03447 0.60 -1.1 844,094 - MPMX19_03447 0.60 -0.2 844,094 - MPMX19_03447 0.60 +0.3 844,229 + MPMX19_03447 0.71 -0.8 844,229 + MPMX19_03447 0.71 +0.1 844,229 + MPMX19_03447 0.71 -0.5 844,230 - MPMX19_03447 0.71 -1.2 844,230 - MPMX19_03447 0.71 -0.3 844,230 - MPMX19_03447 0.71 +0.8 844,230 - MPMX19_03447 0.71 +0.1 844,230 - MPMX19_03447 0.71 -0.9 844,316 - MPMX19_03447 0.78 +0.7 844,316 - MPMX19_03447 0.78 +1.2 844,345 + MPMX19_03447 0.80 -0.9 844,345 + MPMX19_03447 0.80 -0.5 844,345 + MPMX19_03447 0.80 +0.3 844,345 + MPMX19_03447 0.80 -0.1 844,345 + MPMX19_03447 0.80 -0.3 844,345 + MPMX19_03447 0.80 -0.9 844,345 + MPMX19_03447 0.80 +0.3 844,345 + MPMX19_03447 0.80 +0.8 844,346 - MPMX19_03447 0.80 +0.8 844,346 - MPMX19_03447 0.80 +1.1 844,346 - MPMX19_03447 0.80 -0.2 844,346 - MPMX19_03447 0.80 -1.3 844,346 - MPMX19_03447 0.80 +1.1 844,346 - MPMX19_03447 0.80 -0.9 844,346 - MPMX19_03447 0.80 -0.7 844,346 - MPMX19_03447 0.80 -1.0 844,499 - -2.8 844,614 + +1.9 844,614 + +0.8 844,614 + +0.7 844,614 + -0.3 844,614 + -0.1 844,615 - -0.5 844,615 - +0.7 844,615 - -1.1 844,615 - -1.9 844,615 - -1.0 844,615 - -3.1 844,615 - -0.2 844,633 - -2.1 844,633 - -1.3 844,688 + +0.9 844,688 + +1.3 844,688 + -0.5 844,688 + +0.3 844,688 + +0.1 844,689 - -0.2 844,689 - +0.4 844,878 + MPMX19_03448 0.32 +1.1 844,878 + MPMX19_03448 0.32 +0.1 844,878 + MPMX19_03448 0.32 +0.1 844,905 + MPMX19_03448 0.36 -0.1 844,950 + MPMX19_03448 0.41 +0.4 844,951 - MPMX19_03448 0.41 -0.8 844,951 - MPMX19_03448 0.41 -0.6 845,025 + MPMX19_03448 0.51 -0.7 845,025 + MPMX19_03448 0.51 -1.0 845,026 - MPMX19_03448 0.51 +1.7 845,026 - MPMX19_03448 0.51 -0.1 845,026 - MPMX19_03448 0.51 -0.6 845,026 - MPMX19_03448 0.51 -1.3 845,026 - MPMX19_03448 0.51 -0.5 845,169 + MPMX19_03448 0.68 -0.7 845,169 + MPMX19_03448 0.68 -2.1 845,169 + MPMX19_03448 0.68 -0.5 845,170 - MPMX19_03448 0.69 -1.8 845,357 + -0.4 845,357 + -0.7 845,357 + -0.0 845,357 + -0.6 845,357 + -0.0 845,357 + +0.6 845,357 + -1.4 845,357 + -0.6 845,358 - -1.5 845,358 - -0.1 845,358 - +0.1 845,358 - -0.3 845,358 - +0.1 845,534 + +0.5 845,534 + -0.3 845,534 + -0.4 845,535 - +0.5 845,535 - +0.8 845,584 + -1.2 845,584 + +0.1 845,584 + -2.0 845,584 + -0.1 845,585 - -1.4 845,585 - -0.1
Or see this region's nucleotide sequence