Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03411

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03410 and MPMX19_03411 are separated by 152 nucleotidesMPMX19_03411 and MPMX19_03412 are separated by 241 nucleotides MPMX19_03410: MPMX19_03410 - 23S ribosomal RNA, at 798,072 to 800,807 _03410 MPMX19_03411: MPMX19_03411 - 5S ribosomal RNA, at 800,960 to 801,070 _03411 MPMX19_03412: MPMX19_03412 - putative cystine transporter YijE, at 801,312 to 802,247 _03412 Position (kb) 800 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 800.914 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.186 kb on + strandat 801.187 kb on - strandat 801.294 kb on + strandat 801.295 kb on - strandat 801.295 kb on - strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.393 kb on + strandat 801.394 kb on - strandat 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.508 kb on + strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.509 kb on - strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.511 kb on + strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.512 kb on - strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.675 kb on + strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.676 kb on - strand, within MPMX19_03412at 801.816 kb on - strand, within MPMX19_03412at 802.033 kb on - strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.062 kb on + strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412at 802.063 kb on - strand, within MPMX19_03412

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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800,914 + -1.4
800,914 + -2.2
800,914 + -0.3
800,914 + +0.4
800,914 + -0.3
800,914 + +0.1
800,914 + -2.0
801,186 + -0.9
801,186 + +0.2
801,186 + -1.4
801,187 - -1.5
801,294 + +1.0
801,295 - -0.7
801,295 - -2.0
801,393 + -0.3
801,393 + -1.6
801,393 + -0.1
801,394 - -0.5
801,508 + MPMX19_03412 0.21 -1.2
801,508 + MPMX19_03412 0.21 -0.0
801,508 + MPMX19_03412 0.21 +1.1
801,508 + MPMX19_03412 0.21 -0.3
801,508 + MPMX19_03412 0.21 -0.4
801,509 - MPMX19_03412 0.21 -1.3
801,509 - MPMX19_03412 0.21 +1.3
801,509 - MPMX19_03412 0.21 -2.1
801,509 - MPMX19_03412 0.21 +2.3
801,509 - MPMX19_03412 0.21 -1.3
801,509 - MPMX19_03412 0.21 -0.6
801,511 + MPMX19_03412 0.21 -0.1
801,511 + MPMX19_03412 0.21 -1.2
801,511 + MPMX19_03412 0.21 -0.9
801,511 + MPMX19_03412 0.21 -0.3
801,511 + MPMX19_03412 0.21 -0.3
801,511 + MPMX19_03412 0.21 -0.3
801,511 + MPMX19_03412 0.21 +0.1
801,511 + MPMX19_03412 0.21 -0.6
801,511 + MPMX19_03412 0.21 +0.4
801,511 + MPMX19_03412 0.21 -1.7
801,511 + MPMX19_03412 0.21 -0.4
801,511 + MPMX19_03412 0.21 -0.9
801,511 + MPMX19_03412 0.21 +0.4
801,511 + MPMX19_03412 0.21 -0.1
801,511 + MPMX19_03412 0.21 -1.8
801,512 - MPMX19_03412 0.21 +0.1
801,512 - MPMX19_03412 0.21 +0.1
801,512 - MPMX19_03412 0.21 +0.4
801,512 - MPMX19_03412 0.21 +0.5
801,512 - MPMX19_03412 0.21 -0.3
801,512 - MPMX19_03412 0.21 -0.1
801,512 - MPMX19_03412 0.21 -0.6
801,512 - MPMX19_03412 0.21 -2.8
801,512 - MPMX19_03412 0.21 -0.6
801,512 - MPMX19_03412 0.21 -0.1
801,512 - MPMX19_03412 0.21 -2.5
801,512 - MPMX19_03412 0.21 -0.9
801,512 - MPMX19_03412 0.21 -0.5
801,512 - MPMX19_03412 0.21 +0.1
801,512 - MPMX19_03412 0.21 -0.4
801,512 - MPMX19_03412 0.21 +2.3
801,512 - MPMX19_03412 0.21 -1.6
801,512 - MPMX19_03412 0.21 -1.8
801,675 + MPMX19_03412 0.39 -0.4
801,675 + MPMX19_03412 0.39 -0.1
801,675 + MPMX19_03412 0.39 -0.2
801,675 + MPMX19_03412 0.39 -0.9
801,675 + MPMX19_03412 0.39 -0.6
801,675 + MPMX19_03412 0.39 -0.6
801,676 - MPMX19_03412 0.39 -1.8
801,676 - MPMX19_03412 0.39 -1.0
801,676 - MPMX19_03412 0.39 -0.1
801,676 - MPMX19_03412 0.39 +0.5
801,676 - MPMX19_03412 0.39 -0.2
801,676 - MPMX19_03412 0.39 +0.5
801,676 - MPMX19_03412 0.39 -0.6
801,676 - MPMX19_03412 0.39 +0.3
801,676 - MPMX19_03412 0.39 -2.7
801,816 - MPMX19_03412 0.54 -0.1
802,033 - MPMX19_03412 0.77 +0.1
802,062 + MPMX19_03412 0.80 -0.2
802,062 + MPMX19_03412 0.80 -0.6
802,062 + MPMX19_03412 0.80 -0.3
802,063 - MPMX19_03412 0.80 +0.3
802,063 - MPMX19_03412 0.80 +0.1
802,063 - MPMX19_03412 0.80 -0.8

Or see this region's nucleotide sequence