Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03401 and MPMX19_03402 are separated by 1 nucleotides MPMX19_03402 and MPMX19_03403 are separated by 1 nucleotides MPMX19_03403 and MPMX19_03404 are separated by 72 nucleotides
MPMX19_03401: MPMX19_03401 - putative ABC transporter ATP-binding protein, at 787,039 to 789,180
_03401
MPMX19_03402: MPMX19_03402 - putative D,D-dipeptide transport system permease protein DdpC, at 789,182 to 790,066
_03402
MPMX19_03403: MPMX19_03403 - Glutathione transport system permease protein GsiC, at 790,068 to 791,024
_03403
MPMX19_03404: MPMX19_03404 - Glutathione-binding protein GsiB, at 791,097 to 792,599
_03404
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.075 kb on - strand at 789.075 kb on - strand at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.718 kb on - strand, within MPMX19_03402 at 789.740 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.910 kb on - strand, within MPMX19_03402 at 790.114 kb on + strand at 790.114 kb on + strand at 790.114 kb on + strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.147 kb on + strand at 790.148 kb on - strand at 790.238 kb on - strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.525 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.831 kb on + strand, within MPMX19_03403 at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.994 kb on - strand at 790.994 kb on - strand at 791.014 kb on + strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.067 kb on - strand at 791.109 kb on + strand at 791.109 kb on + strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.194 kb on + strand at 791.194 kb on + strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.317 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.360 kb on - strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.379 kb on - strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 789,074 + +1.3 789,074 + -0.0 789,074 + +1.0 789,074 + -0.5 789,074 + -1.1 789,075 - +0.1 789,075 - +0.5 789,477 + MPMX19_03402 0.33 +0.7 789,477 + MPMX19_03402 0.33 +0.2 789,477 + MPMX19_03402 0.33 +0.2 789,477 + MPMX19_03402 0.33 +0.1 789,477 + MPMX19_03402 0.33 -1.1 789,477 + MPMX19_03402 0.33 -0.2 789,477 + MPMX19_03402 0.33 +0.5 789,478 - MPMX19_03402 0.33 -1.2 789,478 - MPMX19_03402 0.33 +0.3 789,478 - MPMX19_03402 0.33 -0.7 789,478 - MPMX19_03402 0.33 -0.3 789,478 - MPMX19_03402 0.33 +0.6 789,478 - MPMX19_03402 0.33 -1.5 789,478 - MPMX19_03402 0.33 -2.0 789,478 - MPMX19_03402 0.33 -1.4 789,478 - MPMX19_03402 0.33 +0.7 789,478 - MPMX19_03402 0.33 -0.4 789,478 - MPMX19_03402 0.33 +0.8 789,478 - MPMX19_03402 0.33 -0.1 789,576 + MPMX19_03402 0.45 +0.9 789,576 + MPMX19_03402 0.45 +0.5 789,576 + MPMX19_03402 0.45 +0.4 789,576 + MPMX19_03402 0.45 -0.5 789,576 + MPMX19_03402 0.45 -0.3 789,576 + MPMX19_03402 0.45 -2.8 789,576 + MPMX19_03402 0.45 -1.5 789,576 + MPMX19_03402 0.45 +0.8 789,576 + MPMX19_03402 0.45 -1.3 789,576 + MPMX19_03402 0.45 -2.0 789,576 + MPMX19_03402 0.45 -1.6 789,576 + MPMX19_03402 0.45 -0.3 789,576 + MPMX19_03402 0.45 -0.6 789,577 - MPMX19_03402 0.45 -0.5 789,577 - MPMX19_03402 0.45 -0.5 789,577 - MPMX19_03402 0.45 +0.1 789,577 - MPMX19_03402 0.45 +1.4 789,577 - MPMX19_03402 0.45 +0.5 789,577 - MPMX19_03402 0.45 -1.1 789,577 - MPMX19_03402 0.45 -0.3 789,577 - MPMX19_03402 0.45 -0.6 789,577 - MPMX19_03402 0.45 -1.0 789,577 - MPMX19_03402 0.45 +0.4 789,577 - MPMX19_03402 0.45 -0.8 789,717 + MPMX19_03402 0.60 +0.4 789,717 + MPMX19_03402 0.60 -0.6 789,717 + MPMX19_03402 0.60 -1.9 789,718 - MPMX19_03402 0.61 -0.1 789,740 + MPMX19_03402 0.63 -0.3 789,903 + MPMX19_03402 0.81 -0.5 789,903 + MPMX19_03402 0.81 +0.7 789,903 + MPMX19_03402 0.81 -0.7 789,903 + MPMX19_03402 0.81 +0.2 789,904 - MPMX19_03402 0.82 -1.1 789,904 - MPMX19_03402 0.82 -0.3 789,904 - MPMX19_03402 0.82 +0.1 789,904 - MPMX19_03402 0.82 -0.9 789,904 - MPMX19_03402 0.82 -0.4 789,904 - MPMX19_03402 0.82 -0.9 789,904 - MPMX19_03402 0.82 -2.0 789,910 - MPMX19_03402 0.82 -0.9 790,114 + +0.2 790,114 + +1.2 790,114 + +0.2 790,115 - -2.3 790,115 - -2.1 790,115 - -1.4 790,115 - +1.1 790,115 - -0.7 790,115 - -0.8 790,115 - -1.5 790,115 - +0.1 790,115 - -0.9 790,147 + -1.0 790,148 - -0.8 790,238 - MPMX19_03403 0.18 -0.9 790,390 + MPMX19_03403 0.34 -0.3 790,390 + MPMX19_03403 0.34 -1.1 790,390 + MPMX19_03403 0.34 +0.7 790,390 + MPMX19_03403 0.34 -2.6 790,390 + MPMX19_03403 0.34 -1.0 790,390 + MPMX19_03403 0.34 +0.0 790,390 + MPMX19_03403 0.34 -0.2 790,390 + MPMX19_03403 0.34 -0.3 790,390 + MPMX19_03403 0.34 -0.1 790,390 + MPMX19_03403 0.34 -1.8 790,391 - MPMX19_03403 0.34 +0.3 790,391 - MPMX19_03403 0.34 -0.1 790,391 - MPMX19_03403 0.34 +1.3 790,391 - MPMX19_03403 0.34 -1.6 790,391 - MPMX19_03403 0.34 -0.5 790,391 - MPMX19_03403 0.34 +0.1 790,391 - MPMX19_03403 0.34 +0.9 790,391 - MPMX19_03403 0.34 -0.1 790,391 - MPMX19_03403 0.34 +0.5 790,525 + MPMX19_03403 0.48 +0.7 790,552 + MPMX19_03403 0.51 +0.6 790,552 + MPMX19_03403 0.51 -0.6 790,552 + MPMX19_03403 0.51 +1.7 790,552 + MPMX19_03403 0.51 +1.5 790,552 + MPMX19_03403 0.51 -0.3 790,552 + MPMX19_03403 0.51 -0.4 790,552 + MPMX19_03403 0.51 -1.0 790,552 + MPMX19_03403 0.51 +1.1 790,552 + MPMX19_03403 0.51 +0.6 790,552 + MPMX19_03403 0.51 +1.3 790,553 - MPMX19_03403 0.51 +0.4 790,553 - MPMX19_03403 0.51 +0.1 790,553 - MPMX19_03403 0.51 +0.8 790,553 - MPMX19_03403 0.51 -0.3 790,553 - MPMX19_03403 0.51 -0.6 790,553 - MPMX19_03403 0.51 -1.9 790,553 - MPMX19_03403 0.51 -2.3 790,553 - MPMX19_03403 0.51 +0.7 790,553 - MPMX19_03403 0.51 +0.0 790,615 + MPMX19_03403 0.57 -1.0 790,615 + MPMX19_03403 0.57 +0.6 790,831 + MPMX19_03403 0.80 -0.7 790,993 + -0.1 790,993 + -0.9 790,993 + +0.7 790,993 + +0.1 790,994 - -0.8 790,994 - +0.2 791,014 + +1.4 791,015 - -0.8 791,015 - -0.2 791,015 - +0.1 791,067 - -0.1 791,109 + -0.5 791,109 + -2.1 791,110 - +2.0 791,110 - -0.1 791,110 - -0.3 791,194 + -0.7 791,194 + -1.3 791,195 - -0.6 791,195 - -1.3 791,195 - -0.3 791,245 + -1.8 791,245 + -1.3 791,245 + +0.9 791,246 - +0.7 791,246 - -1.1 791,246 - -1.1 791,246 - +1.0 791,246 - -0.2 791,246 - -1.6 791,246 - -1.0 791,246 - -0.5 791,246 - +0.2 791,246 - -1.3 791,246 - -0.3 791,317 + MPMX19_03404 0.15 +1.1 791,320 + MPMX19_03404 0.15 -0.6 791,320 + MPMX19_03404 0.15 +1.0 791,320 + MPMX19_03404 0.15 -0.5 791,320 + MPMX19_03404 0.15 +0.2 791,320 + MPMX19_03404 0.15 -0.8 791,321 - MPMX19_03404 0.15 -0.6 791,321 - MPMX19_03404 0.15 +0.4 791,321 - MPMX19_03404 0.15 +1.4 791,321 - MPMX19_03404 0.15 -0.3 791,360 - MPMX19_03404 0.17 +0.8 791,378 + MPMX19_03404 0.19 -0.5 791,378 + MPMX19_03404 0.19 -0.5 791,378 + MPMX19_03404 0.19 -1.6 791,378 + MPMX19_03404 0.19 -0.8 791,379 - MPMX19_03404 0.19 +0.1 791,413 + MPMX19_03404 0.21 -0.8 791,413 + MPMX19_03404 0.21 -0.3 791,413 + MPMX19_03404 0.21 +0.2 791,413 + MPMX19_03404 0.21 -0.1 791,414 - MPMX19_03404 0.21 -1.9 791,414 - MPMX19_03404 0.21 +1.0 791,414 - MPMX19_03404 0.21 -0.1 791,414 - MPMX19_03404 0.21 -1.0 791,414 - MPMX19_03404 0.21 -1.3 791,414 - MPMX19_03404 0.21 -0.8 791,414 - MPMX19_03404 0.21 -0.6 791,650 + MPMX19_03404 0.37 +0.4 791,650 + MPMX19_03404 0.37 +0.0 791,650 + MPMX19_03404 0.37 +0.6 791,650 + MPMX19_03404 0.37 -2.7 791,650 + MPMX19_03404 0.37 -0.9 791,650 + MPMX19_03404 0.37 -0.1 791,650 + MPMX19_03404 0.37 -0.3 791,650 + MPMX19_03404 0.37 +1.4 791,650 + MPMX19_03404 0.37 -0.8 791,650 + MPMX19_03404 0.37 +1.4 791,650 + MPMX19_03404 0.37 +0.4 791,650 + MPMX19_03404 0.37 -2.0 791,650 + MPMX19_03404 0.37 +0.4 791,650 + MPMX19_03404 0.37 -0.1 791,651 - MPMX19_03404 0.37 -0.7 791,651 - MPMX19_03404 0.37 -0.8 791,651 - MPMX19_03404 0.37 -0.6 791,651 - MPMX19_03404 0.37 +0.1 791,651 - MPMX19_03404 0.37 +0.3 791,651 - MPMX19_03404 0.37 -0.9 791,651 - MPMX19_03404 0.37 +0.1 791,651 - MPMX19_03404 0.37 -0.9 791,651 - MPMX19_03404 0.37 +1.2 791,651 - MPMX19_03404 0.37 +0.9 791,651 - MPMX19_03404 0.37 -0.6 791,651 - MPMX19_03404 0.37 +0.5 791,651 - MPMX19_03404 0.37 -0.3 791,651 - MPMX19_03404 0.37 -0.3 791,651 - MPMX19_03404 0.37 -0.6 791,653 + MPMX19_03404 0.37 +0.8 791,653 + MPMX19_03404 0.37 -0.3 791,653 + MPMX19_03404 0.37 -1.3 791,654 - MPMX19_03404 0.37 +1.1 791,654 - MPMX19_03404 0.37 +0.7 791,654 - MPMX19_03404 0.37 -2.0 791,654 - MPMX19_03404 0.37 -1.1 791,654 - MPMX19_03404 0.37 -0.9 791,992 + MPMX19_03404 0.60 -0.9 791,992 + MPMX19_03404 0.60 -0.8 791,993 - MPMX19_03404 0.60 +1.5 791,993 - MPMX19_03404 0.60 -1.7 791,993 - MPMX19_03404 0.60 -1.0 791,993 - MPMX19_03404 0.60 +0.2 791,993 - MPMX19_03404 0.60 -0.8 791,993 - MPMX19_03404 0.60 +0.1
Or see this region's nucleotide sequence