Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03401

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03399 and MPMX19_03400 are separated by 54 nucleotidesMPMX19_03400 and MPMX19_03401 are separated by 110 nucleotidesMPMX19_03401 and MPMX19_03402 are separated by 1 nucleotidesMPMX19_03402 and MPMX19_03403 are separated by 1 nucleotides MPMX19_03399: MPMX19_03399 - Guanidinopropionase, at 785,495 to 786,454 _03399 MPMX19_03400: MPMX19_03400 - hypothetical protein, at 786,509 to 786,928 _03400 MPMX19_03401: MPMX19_03401 - putative ABC transporter ATP-binding protein, at 787,039 to 789,180 _03401 MPMX19_03402: MPMX19_03402 - putative D,D-dipeptide transport system permease protein DdpC, at 789,182 to 790,066 _03402 MPMX19_03403: MPMX19_03403 - Glutathione transport system permease protein GsiC, at 790,068 to 791,024 _03403 Position (kb) 787 788 789 790Strain fitness (log2 ratio) -3 -2 -1 0 1at 786.138 kb on + strand, within MPMX19_03399at 786.138 kb on + strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.139 kb on - strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.270 kb on + strand, within MPMX19_03399at 786.271 kb on - strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.327 kb on + strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.328 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399at 786.340 kb on - strand, within MPMX19_03399at 786.633 kb on + strand, within MPMX19_03400at 786.633 kb on + strand, within MPMX19_03400at 786.634 kb on - strand, within MPMX19_03400at 786.649 kb on - strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on + strand, within MPMX19_03400at 786.666 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.667 kb on - strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.882 kb on + strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.883 kb on - strand, within MPMX19_03400at 786.968 kb on - strandat 786.968 kb on - strandat 787.316 kb on + strand, within MPMX19_03401at 787.316 kb on + strand, within MPMX19_03401at 787.316 kb on + strand, within MPMX19_03401at 787.317 kb on - strand, within MPMX19_03401at 787.317 kb on - strand, within MPMX19_03401at 787.325 kb on + strand, within MPMX19_03401at 787.326 kb on - strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.379 kb on + strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.380 kb on - strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.442 kb on + strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 787.443 kb on - strand, within MPMX19_03401at 788.027 kb on + strand, within MPMX19_03401at 788.027 kb on + strand, within MPMX19_03401at 788.028 kb on - strand, within MPMX19_03401at 788.028 kb on - strand, within MPMX19_03401at 788.366 kb on + strand, within MPMX19_03401at 788.366 kb on + strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.367 kb on - strand, within MPMX19_03401at 788.430 kb on - strand, within MPMX19_03401at 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.074 kb on + strandat 789.075 kb on - strandat 789.075 kb on - strandat 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.477 kb on + strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.478 kb on - strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.576 kb on + strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.577 kb on - strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.717 kb on + strand, within MPMX19_03402at 789.718 kb on - strand, within MPMX19_03402at 789.740 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.903 kb on + strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.904 kb on - strand, within MPMX19_03402at 789.910 kb on - strand, within MPMX19_03402at 790.114 kb on + strandat 790.114 kb on + strandat 790.114 kb on + strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.115 kb on - strandat 790.147 kb on + strandat 790.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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786,138 + MPMX19_03399 0.67 -0.3
786,138 + MPMX19_03399 0.67 -0.2
786,139 - MPMX19_03399 0.67 -2.0
786,139 - MPMX19_03399 0.67 +1.2
786,139 - MPMX19_03399 0.67 -0.6
786,139 - MPMX19_03399 0.67 -0.2
786,270 + MPMX19_03399 0.81 -1.4
786,270 + MPMX19_03399 0.81 +0.9
786,271 - MPMX19_03399 0.81 -0.6
786,327 + MPMX19_03399 0.87 -0.3
786,327 + MPMX19_03399 0.87 -0.1
786,327 + MPMX19_03399 0.87 +0.1
786,328 - MPMX19_03399 0.87 +0.1
786,328 - MPMX19_03399 0.87 +0.9
786,340 - MPMX19_03399 0.88 +0.4
786,340 - MPMX19_03399 0.88 -0.9
786,633 + MPMX19_03400 0.30 +0.2
786,633 + MPMX19_03400 0.30 -0.1
786,634 - MPMX19_03400 0.30 -0.3
786,649 - MPMX19_03400 0.33 -1.2
786,666 + MPMX19_03400 0.37 -0.1
786,666 + MPMX19_03400 0.37 -0.9
786,666 + MPMX19_03400 0.37 +1.0
786,666 + MPMX19_03400 0.37 +0.5
786,666 + MPMX19_03400 0.37 -0.9
786,666 - MPMX19_03400 0.37 -1.0
786,667 - MPMX19_03400 0.38 -0.1
786,667 - MPMX19_03400 0.38 -1.1
786,667 - MPMX19_03400 0.38 +0.2
786,667 - MPMX19_03400 0.38 +0.4
786,667 - MPMX19_03400 0.38 -0.3
786,667 - MPMX19_03400 0.38 +0.3
786,667 - MPMX19_03400 0.38 +0.3
786,882 + MPMX19_03400 0.89 +0.5
786,882 + MPMX19_03400 0.89 -1.6
786,882 + MPMX19_03400 0.89 +0.7
786,882 + MPMX19_03400 0.89 -0.3
786,883 - MPMX19_03400 0.89 -0.3
786,883 - MPMX19_03400 0.89 -1.1
786,883 - MPMX19_03400 0.89 +0.9
786,883 - MPMX19_03400 0.89 -0.6
786,968 - -0.4
786,968 - +0.7
787,316 + MPMX19_03401 0.13 -0.1
787,316 + MPMX19_03401 0.13 -1.6
787,316 + MPMX19_03401 0.13 -2.0
787,317 - MPMX19_03401 0.13 -0.1
787,317 - MPMX19_03401 0.13 -0.2
787,325 + MPMX19_03401 0.13 -0.1
787,326 - MPMX19_03401 0.13 +0.5
787,379 + MPMX19_03401 0.16 -1.5
787,379 + MPMX19_03401 0.16 +0.2
787,379 + MPMX19_03401 0.16 -0.4
787,380 - MPMX19_03401 0.16 -1.6
787,380 - MPMX19_03401 0.16 +1.7
787,380 - MPMX19_03401 0.16 -0.6
787,380 - MPMX19_03401 0.16 -0.9
787,442 + MPMX19_03401 0.19 +0.2
787,442 + MPMX19_03401 0.19 +0.5
787,442 + MPMX19_03401 0.19 +0.3
787,442 + MPMX19_03401 0.19 -1.5
787,442 + MPMX19_03401 0.19 +0.3
787,442 + MPMX19_03401 0.19 +0.1
787,442 + MPMX19_03401 0.19 -0.9
787,442 + MPMX19_03401 0.19 +0.9
787,442 + MPMX19_03401 0.19 +1.1
787,443 - MPMX19_03401 0.19 -0.2
787,443 - MPMX19_03401 0.19 -0.5
787,443 - MPMX19_03401 0.19 +1.2
787,443 - MPMX19_03401 0.19 -0.8
788,027 + MPMX19_03401 0.46 -0.1
788,027 + MPMX19_03401 0.46 -0.5
788,028 - MPMX19_03401 0.46 +0.7
788,028 - MPMX19_03401 0.46 -0.5
788,366 + MPMX19_03401 0.62 -1.3
788,366 + MPMX19_03401 0.62 -1.7
788,367 - MPMX19_03401 0.62 -0.9
788,367 - MPMX19_03401 0.62 +0.8
788,367 - MPMX19_03401 0.62 -0.8
788,367 - MPMX19_03401 0.62 -0.3
788,430 - MPMX19_03401 0.65 +0.1
789,074 + +1.3
789,074 + -0.0
789,074 + +1.0
789,074 + -0.5
789,074 + -1.1
789,075 - +0.1
789,075 - +0.5
789,477 + MPMX19_03402 0.33 +0.7
789,477 + MPMX19_03402 0.33 +0.2
789,477 + MPMX19_03402 0.33 +0.2
789,477 + MPMX19_03402 0.33 +0.1
789,477 + MPMX19_03402 0.33 -1.1
789,477 + MPMX19_03402 0.33 -0.2
789,477 + MPMX19_03402 0.33 +0.5
789,478 - MPMX19_03402 0.33 -1.2
789,478 - MPMX19_03402 0.33 +0.3
789,478 - MPMX19_03402 0.33 -0.7
789,478 - MPMX19_03402 0.33 -0.3
789,478 - MPMX19_03402 0.33 +0.6
789,478 - MPMX19_03402 0.33 -1.5
789,478 - MPMX19_03402 0.33 -2.0
789,478 - MPMX19_03402 0.33 -1.4
789,478 - MPMX19_03402 0.33 +0.7
789,478 - MPMX19_03402 0.33 -0.4
789,478 - MPMX19_03402 0.33 +0.8
789,478 - MPMX19_03402 0.33 -0.1
789,576 + MPMX19_03402 0.45 +0.9
789,576 + MPMX19_03402 0.45 +0.5
789,576 + MPMX19_03402 0.45 +0.4
789,576 + MPMX19_03402 0.45 -0.5
789,576 + MPMX19_03402 0.45 -0.3
789,576 + MPMX19_03402 0.45 -2.8
789,576 + MPMX19_03402 0.45 -1.5
789,576 + MPMX19_03402 0.45 +0.8
789,576 + MPMX19_03402 0.45 -1.3
789,576 + MPMX19_03402 0.45 -2.0
789,576 + MPMX19_03402 0.45 -1.6
789,576 + MPMX19_03402 0.45 -0.3
789,576 + MPMX19_03402 0.45 -0.6
789,577 - MPMX19_03402 0.45 -0.5
789,577 - MPMX19_03402 0.45 -0.5
789,577 - MPMX19_03402 0.45 +0.1
789,577 - MPMX19_03402 0.45 +1.4
789,577 - MPMX19_03402 0.45 +0.5
789,577 - MPMX19_03402 0.45 -1.1
789,577 - MPMX19_03402 0.45 -0.3
789,577 - MPMX19_03402 0.45 -0.6
789,577 - MPMX19_03402 0.45 -1.0
789,577 - MPMX19_03402 0.45 +0.4
789,577 - MPMX19_03402 0.45 -0.8
789,717 + MPMX19_03402 0.60 +0.4
789,717 + MPMX19_03402 0.60 -0.6
789,717 + MPMX19_03402 0.60 -1.9
789,718 - MPMX19_03402 0.61 -0.1
789,740 + MPMX19_03402 0.63 -0.3
789,903 + MPMX19_03402 0.81 -0.5
789,903 + MPMX19_03402 0.81 +0.7
789,903 + MPMX19_03402 0.81 -0.7
789,903 + MPMX19_03402 0.81 +0.2
789,904 - MPMX19_03402 0.82 -1.1
789,904 - MPMX19_03402 0.82 -0.3
789,904 - MPMX19_03402 0.82 +0.1
789,904 - MPMX19_03402 0.82 -0.9
789,904 - MPMX19_03402 0.82 -0.4
789,904 - MPMX19_03402 0.82 -0.9
789,904 - MPMX19_03402 0.82 -2.0
789,910 - MPMX19_03402 0.82 -0.9
790,114 + +0.2
790,114 + +1.2
790,114 + +0.2
790,115 - -2.3
790,115 - -2.1
790,115 - -1.4
790,115 - +1.1
790,115 - -0.7
790,115 - -0.8
790,115 - -1.5
790,115 - +0.1
790,115 - -0.9
790,147 + -1.0
790,148 - -0.8

Or see this region's nucleotide sequence