Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03397

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03395 and MPMX19_03396 are separated by 5 nucleotidesMPMX19_03396 and MPMX19_03397 are separated by 33 nucleotidesMPMX19_03397 and MPMX19_03398 are separated by 43 nucleotides MPMX19_03395: MPMX19_03395 - Lipopolysaccharide export system ATP-binding protein LptB, at 781,340 to 782,113 _03395 MPMX19_03396: MPMX19_03396 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 782,119 to 782,826 _03396 MPMX19_03397: MPMX19_03397 - Acetylornithine deacetylase, at 782,860 to 784,023 _03397 MPMX19_03398: MPMX19_03398 - 5'-deoxyadenosine deaminase, at 784,067 to 785,464 _03398 Position (kb) 782 783 784 785Strain fitness (log2 ratio) -2 -1 0 1 2at 782.096 kb on + strandat 782.096 kb on + strandat 782.097 kb on - strandat 782.149 kb on + strandat 782.150 kb on - strandat 782.652 kb on + strand, within MPMX19_03396at 782.652 kb on + strand, within MPMX19_03396at 782.652 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.737 kb on + strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 782.738 kb on - strand, within MPMX19_03396at 783.111 kb on - strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.332 kb on + strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.333 kb on - strand, within MPMX19_03397at 783.614 kb on + strand, within MPMX19_03397at 783.614 kb on + strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 783.615 kb on - strand, within MPMX19_03397at 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.044 kb on + strandat 784.045 kb on - strandat 784.045 kb on - strandat 784.145 kb on + strandat 784.145 kb on + strandat 784.145 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.206 kb on + strandat 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.207 kb on - strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.239 kb on + strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.240 kb on - strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.965 kb on + strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398at 784.966 kb on - strand, within MPMX19_03398

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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782,096 + -0.5
782,096 + -1.0
782,097 - +1.1
782,149 + -0.4
782,150 - -1.1
782,652 + MPMX19_03396 0.75 +0.7
782,652 + MPMX19_03396 0.75 +0.8
782,652 + MPMX19_03396 0.75 +0.3
782,737 + MPMX19_03396 0.87 -0.7
782,737 + MPMX19_03396 0.87 +0.4
782,737 + MPMX19_03396 0.87 +2.1
782,738 - MPMX19_03396 0.87 +0.4
782,738 - MPMX19_03396 0.87 -0.0
782,738 - MPMX19_03396 0.87 -0.1
782,738 - MPMX19_03396 0.87 -0.5
782,738 - MPMX19_03396 0.87 -0.9
783,111 - MPMX19_03397 0.22 -1.4
783,332 + MPMX19_03397 0.41 +0.4
783,332 + MPMX19_03397 0.41 -2.0
783,332 + MPMX19_03397 0.41 -1.5
783,332 + MPMX19_03397 0.41 +0.4
783,332 + MPMX19_03397 0.41 -2.4
783,332 + MPMX19_03397 0.41 -1.1
783,332 + MPMX19_03397 0.41 -0.3
783,333 - MPMX19_03397 0.41 +0.4
783,333 - MPMX19_03397 0.41 -0.3
783,333 - MPMX19_03397 0.41 -1.1
783,333 - MPMX19_03397 0.41 -0.6
783,333 - MPMX19_03397 0.41 +0.4
783,333 - MPMX19_03397 0.41 +0.2
783,333 - MPMX19_03397 0.41 -1.1
783,333 - MPMX19_03397 0.41 +0.8
783,614 + MPMX19_03397 0.65 -0.4
783,614 + MPMX19_03397 0.65 -0.1
783,615 - MPMX19_03397 0.65 +0.1
783,615 - MPMX19_03397 0.65 -1.3
783,615 - MPMX19_03397 0.65 -0.6
783,615 - MPMX19_03397 0.65 -0.1
783,615 - MPMX19_03397 0.65 -0.0
783,615 - MPMX19_03397 0.65 -0.1
783,615 - MPMX19_03397 0.65 +0.9
784,044 + -0.6
784,044 + +0.1
784,044 + +0.3
784,044 + +0.5
784,044 + +0.4
784,044 + -0.2
784,045 - -0.8
784,045 - +0.6
784,145 + +1.0
784,145 + +1.5
784,145 + +1.7
784,206 + +0.5
784,206 + -0.5
784,206 + -0.9
784,206 + -1.2
784,206 + -0.5
784,206 + -0.8
784,206 + -0.5
784,206 + -0.1
784,206 + +0.1
784,206 + -1.0
784,206 + -0.1
784,206 + -0.2
784,206 + +0.3
784,206 + +0.9
784,206 + -0.2
784,206 + +0.5
784,206 + +0.1
784,206 + -1.2
784,207 - MPMX19_03398 0.10 +0.2
784,207 - MPMX19_03398 0.10 -0.3
784,207 - MPMX19_03398 0.10 -0.3
784,207 - MPMX19_03398 0.10 -0.4
784,207 - MPMX19_03398 0.10 -0.5
784,207 - MPMX19_03398 0.10 +1.4
784,207 - MPMX19_03398 0.10 -1.1
784,207 - MPMX19_03398 0.10 -0.6
784,239 + MPMX19_03398 0.12 +0.6
784,239 + MPMX19_03398 0.12 +2.3
784,239 + MPMX19_03398 0.12 -1.5
784,240 - MPMX19_03398 0.12 -1.8
784,240 - MPMX19_03398 0.12 -0.1
784,240 - MPMX19_03398 0.12 -1.0
784,965 + MPMX19_03398 0.64 -0.7
784,965 + MPMX19_03398 0.64 -0.9
784,965 + MPMX19_03398 0.64 -1.5
784,965 + MPMX19_03398 0.64 -1.0
784,965 + MPMX19_03398 0.64 -0.6
784,966 - MPMX19_03398 0.64 +0.9
784,966 - MPMX19_03398 0.64 -1.5
784,966 - MPMX19_03398 0.64 -0.4

Or see this region's nucleotide sequence