Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03394

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03392 and MPMX19_03393 are separated by 26 nucleotidesMPMX19_03393 and MPMX19_03394 overlap by 8 nucleotidesMPMX19_03394 and MPMX19_03395 overlap by 4 nucleotidesMPMX19_03395 and MPMX19_03396 are separated by 5 nucleotides MPMX19_03392: MPMX19_03392 - hypothetical protein, at 778,206 to 779,390 _03392 MPMX19_03393: MPMX19_03393 - High-affinity branched-chain amino acid transport system permease protein LivH, at 779,417 to 780,310 _03393 MPMX19_03394: MPMX19_03394 - hypothetical protein, at 780,303 to 781,343 _03394 MPMX19_03395: MPMX19_03395 - Lipopolysaccharide export system ATP-binding protein LptB, at 781,340 to 782,113 _03395 MPMX19_03396: MPMX19_03396 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 782,119 to 782,826 _03396 Position (kb) 780 781 782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 779.436 kb on - strandat 779.548 kb on + strand, within MPMX19_03393at 779.549 kb on - strand, within MPMX19_03393at 779.549 kb on - strand, within MPMX19_03393at 779.549 kb on - strand, within MPMX19_03393at 779.549 kb on - strand, within MPMX19_03393at 779.549 kb on - strand, within MPMX19_03393at 779.567 kb on + strand, within MPMX19_03393at 779.567 kb on + strand, within MPMX19_03393at 779.567 kb on + strand, within MPMX19_03393at 779.567 kb on + strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.568 kb on - strand, within MPMX19_03393at 779.759 kb on - strand, within MPMX19_03393at 779.759 kb on - strand, within MPMX19_03393at 779.783 kb on + strand, within MPMX19_03393at 779.783 kb on + strand, within MPMX19_03393at 779.783 kb on + strand, within MPMX19_03393at 779.783 kb on + strand, within MPMX19_03393at 779.784 kb on - strand, within MPMX19_03393at 779.858 kb on + strand, within MPMX19_03393at 779.859 kb on - strand, within MPMX19_03393at 779.859 kb on - strand, within MPMX19_03393at 780.005 kb on + strand, within MPMX19_03393at 780.005 kb on + strand, within MPMX19_03393at 780.005 kb on + strand, within MPMX19_03393at 780.006 kb on - strand, within MPMX19_03393at 780.006 kb on - strand, within MPMX19_03393at 780.006 kb on - strand, within MPMX19_03393at 780.006 kb on - strand, within MPMX19_03393at 780.006 kb on - strand, within MPMX19_03393at 780.071 kb on + strand, within MPMX19_03393at 780.071 kb on + strand, within MPMX19_03393at 780.071 kb on + strand, within MPMX19_03393at 780.071 kb on + strand, within MPMX19_03393at 780.072 kb on - strand, within MPMX19_03393at 780.072 kb on - strand, within MPMX19_03393at 780.072 kb on - strand, within MPMX19_03393at 780.072 kb on - strand, within MPMX19_03393at 780.072 kb on - strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.209 kb on + strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.210 kb on - strand, within MPMX19_03393at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.459 kb on + strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.460 kb on - strand, within MPMX19_03394at 780.528 kb on + strand, within MPMX19_03394at 780.529 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.562 kb on - strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.579 kb on + strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.580 kb on - strand, within MPMX19_03394at 780.705 kb on + strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.706 kb on - strand, within MPMX19_03394at 780.756 kb on + strand, within MPMX19_03394at 780.756 kb on + strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.757 kb on - strand, within MPMX19_03394at 780.894 kb on + strand, within MPMX19_03394at 780.895 kb on - strand, within MPMX19_03394at 780.909 kb on + strand, within MPMX19_03394at 780.909 kb on + strand, within MPMX19_03394at 780.910 kb on - strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 780.999 kb on + strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.000 kb on - strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.014 kb on + strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.015 kb on - strand, within MPMX19_03394at 781.056 kb on + strand, within MPMX19_03394at 781.056 kb on + strand, within MPMX19_03394at 781.057 kb on - strand, within MPMX19_03394at 781.057 kb on - strand, within MPMX19_03394at 782.096 kb on + strandat 782.096 kb on + strandat 782.097 kb on - strandat 782.149 kb on + strandat 782.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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779,436 - -0.5
779,548 + MPMX19_03393 0.15 -1.6
779,549 - MPMX19_03393 0.15 -0.9
779,549 - MPMX19_03393 0.15 -2.6
779,549 - MPMX19_03393 0.15 -1.1
779,549 - MPMX19_03393 0.15 +1.9
779,549 - MPMX19_03393 0.15 -0.9
779,567 + MPMX19_03393 0.17 -0.6
779,567 + MPMX19_03393 0.17 +0.8
779,567 + MPMX19_03393 0.17 -0.5
779,567 + MPMX19_03393 0.17 -0.4
779,568 - MPMX19_03393 0.17 -1.9
779,568 - MPMX19_03393 0.17 -0.8
779,568 - MPMX19_03393 0.17 -0.3
779,568 - MPMX19_03393 0.17 -0.8
779,568 - MPMX19_03393 0.17 -0.5
779,568 - MPMX19_03393 0.17 +1.3
779,568 - MPMX19_03393 0.17 -0.4
779,759 - MPMX19_03393 0.38 +0.9
779,759 - MPMX19_03393 0.38 +0.9
779,783 + MPMX19_03393 0.41 +0.4
779,783 + MPMX19_03393 0.41 -0.1
779,783 + MPMX19_03393 0.41 -0.1
779,783 + MPMX19_03393 0.41 -0.4
779,784 - MPMX19_03393 0.41 -1.5
779,858 + MPMX19_03393 0.49 +0.3
779,859 - MPMX19_03393 0.49 -0.2
779,859 - MPMX19_03393 0.49 -0.8
780,005 + MPMX19_03393 0.66 +0.3
780,005 + MPMX19_03393 0.66 +0.8
780,005 + MPMX19_03393 0.66 -0.4
780,006 - MPMX19_03393 0.66 +0.6
780,006 - MPMX19_03393 0.66 +0.3
780,006 - MPMX19_03393 0.66 -1.5
780,006 - MPMX19_03393 0.66 -0.9
780,006 - MPMX19_03393 0.66 -0.3
780,071 + MPMX19_03393 0.73 -1.1
780,071 + MPMX19_03393 0.73 -0.1
780,071 + MPMX19_03393 0.73 -0.6
780,071 + MPMX19_03393 0.73 +0.7
780,072 - MPMX19_03393 0.73 +1.7
780,072 - MPMX19_03393 0.73 +0.2
780,072 - MPMX19_03393 0.73 +2.1
780,072 - MPMX19_03393 0.73 +0.9
780,072 - MPMX19_03393 0.73 -0.4
780,209 + MPMX19_03393 0.89 +0.1
780,209 + MPMX19_03393 0.89 -0.6
780,209 + MPMX19_03393 0.89 -0.1
780,209 + MPMX19_03393 0.89 -1.0
780,209 + MPMX19_03393 0.89 -2.9
780,209 + MPMX19_03393 0.89 +0.2
780,209 + MPMX19_03393 0.89 -2.0
780,209 + MPMX19_03393 0.89 +1.1
780,209 + MPMX19_03393 0.89 -0.3
780,209 + MPMX19_03393 0.89 +0.1
780,209 + MPMX19_03393 0.89 -0.0
780,209 + MPMX19_03393 0.89 -0.4
780,209 + MPMX19_03393 0.89 -1.1
780,210 - MPMX19_03393 0.89 -1.1
780,210 - MPMX19_03393 0.89 -1.7
780,210 - MPMX19_03393 0.89 -0.9
780,210 - MPMX19_03393 0.89 +0.4
780,210 - MPMX19_03393 0.89 -2.3
780,210 - MPMX19_03393 0.89 -0.1
780,210 - MPMX19_03393 0.89 +0.5
780,210 - MPMX19_03393 0.89 +0.7
780,210 - MPMX19_03393 0.89 +0.2
780,210 - MPMX19_03393 0.89 +0.8
780,210 - MPMX19_03393 0.89 -0.0
780,210 - MPMX19_03393 0.89 -1.2
780,210 - MPMX19_03393 0.89 +0.1
780,459 + MPMX19_03394 0.15 -0.6
780,459 + MPMX19_03394 0.15 +0.5
780,459 + MPMX19_03394 0.15 +0.4
780,459 + MPMX19_03394 0.15 -0.1
780,460 - MPMX19_03394 0.15 -1.5
780,460 - MPMX19_03394 0.15 -1.9
780,460 - MPMX19_03394 0.15 +0.1
780,528 + MPMX19_03394 0.22 -1.1
780,529 - MPMX19_03394 0.22 +0.2
780,562 - MPMX19_03394 0.25 +1.3
780,562 - MPMX19_03394 0.25 +0.4
780,562 - MPMX19_03394 0.25 +0.3
780,579 + MPMX19_03394 0.27 -1.5
780,579 + MPMX19_03394 0.27 -0.5
780,579 + MPMX19_03394 0.27 -0.8
780,580 - MPMX19_03394 0.27 -1.2
780,580 - MPMX19_03394 0.27 -0.6
780,580 - MPMX19_03394 0.27 +0.1
780,580 - MPMX19_03394 0.27 -0.8
780,580 - MPMX19_03394 0.27 -0.2
780,580 - MPMX19_03394 0.27 +1.3
780,580 - MPMX19_03394 0.27 -0.9
780,580 - MPMX19_03394 0.27 +0.1
780,705 + MPMX19_03394 0.39 -2.8
780,706 - MPMX19_03394 0.39 +0.2
780,706 - MPMX19_03394 0.39 -1.3
780,706 - MPMX19_03394 0.39 -0.9
780,706 - MPMX19_03394 0.39 +0.4
780,706 - MPMX19_03394 0.39 -0.9
780,756 + MPMX19_03394 0.44 +0.0
780,756 + MPMX19_03394 0.44 -0.9
780,757 - MPMX19_03394 0.44 -2.6
780,757 - MPMX19_03394 0.44 -1.0
780,757 - MPMX19_03394 0.44 +0.2
780,757 - MPMX19_03394 0.44 -0.3
780,757 - MPMX19_03394 0.44 -0.4
780,894 + MPMX19_03394 0.57 -0.5
780,895 - MPMX19_03394 0.57 +0.7
780,909 + MPMX19_03394 0.58 -0.4
780,909 + MPMX19_03394 0.58 +0.2
780,910 - MPMX19_03394 0.58 +0.8
780,999 + MPMX19_03394 0.67 -0.8
780,999 + MPMX19_03394 0.67 -0.3
780,999 + MPMX19_03394 0.67 -1.5
780,999 + MPMX19_03394 0.67 +1.0
781,000 - MPMX19_03394 0.67 -1.1
781,000 - MPMX19_03394 0.67 -0.9
781,000 - MPMX19_03394 0.67 -0.6
781,014 + MPMX19_03394 0.68 -3.6
781,014 + MPMX19_03394 0.68 +0.8
781,014 + MPMX19_03394 0.68 -1.0
781,014 + MPMX19_03394 0.68 -0.9
781,014 + MPMX19_03394 0.68 +0.6
781,014 + MPMX19_03394 0.68 -0.3
781,014 + MPMX19_03394 0.68 -0.8
781,014 + MPMX19_03394 0.68 +1.7
781,015 - MPMX19_03394 0.68 -1.1
781,015 - MPMX19_03394 0.68 -0.9
781,015 - MPMX19_03394 0.68 +0.7
781,015 - MPMX19_03394 0.68 -0.5
781,015 - MPMX19_03394 0.68 -0.8
781,015 - MPMX19_03394 0.68 -1.0
781,015 - MPMX19_03394 0.68 -0.3
781,015 - MPMX19_03394 0.68 +0.3
781,015 - MPMX19_03394 0.68 +0.3
781,015 - MPMX19_03394 0.68 -1.2
781,056 + MPMX19_03394 0.72 -0.3
781,056 + MPMX19_03394 0.72 +0.9
781,057 - MPMX19_03394 0.72 -0.9
781,057 - MPMX19_03394 0.72 +0.5
782,096 + -0.5
782,096 + -1.0
782,097 - +1.1
782,149 + -0.4
782,150 - -1.1

Or see this region's nucleotide sequence