Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03381

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03380 and MPMX19_03381 overlap by 11 nucleotidesMPMX19_03381 and MPMX19_03382 are separated by 9 nucleotides MPMX19_03380: MPMX19_03380 - 5-oxoprolinase subunit C, at 764,665 to 765,636 _03380 MPMX19_03381: MPMX19_03381 - 5-oxoprolinase subunit B, at 765,626 to 766,501 _03381 MPMX19_03382: MPMX19_03382 - Biotin carboxylase, at 766,511 to 767,890 _03382 Position (kb) 765 766 767Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 764.825 kb on + strand, within MPMX19_03380at 764.826 kb on - strand, within MPMX19_03380at 764.898 kb on - strand, within MPMX19_03380at 764.903 kb on + strand, within MPMX19_03380at 764.903 kb on + strand, within MPMX19_03380at 764.904 kb on - strand, within MPMX19_03380at 764.904 kb on - strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.971 kb on - strand, within MPMX19_03380at 764.971 kb on - strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.081 kb on - strand, within MPMX19_03380at 765.091 kb on + strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.299 kb on + strand, within MPMX19_03380at 765.300 kb on - strand, within MPMX19_03380at 765.300 kb on - strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.530 kb on + strand, within MPMX19_03380at 765.572 kb on + strandat 765.573 kb on - strandat 765.573 kb on - strandat 765.573 kb on - strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.627 kb on + strandat 765.628 kb on - strandat 765.628 kb on - strandat 765.628 kb on - strandat 765.628 kb on - strandat 765.703 kb on + strandat 765.703 kb on + strandat 765.703 kb on + strandat 765.704 kb on - strandat 765.704 kb on - strandat 765.704 kb on - strandat 765.762 kb on + strand, within MPMX19_03381at 765.762 kb on + strand, within MPMX19_03381at 765.763 kb on - strand, within MPMX19_03381at 765.763 kb on - strand, within MPMX19_03381at 765.763 kb on - strand, within MPMX19_03381at 765.763 kb on - strand, within MPMX19_03381at 765.858 kb on + strand, within MPMX19_03381at 765.858 kb on + strand, within MPMX19_03381at 765.858 kb on + strand, within MPMX19_03381at 765.858 kb on + strand, within MPMX19_03381at 765.858 kb on + strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.859 kb on - strand, within MPMX19_03381at 765.891 kb on + strand, within MPMX19_03381at 765.916 kb on - strand, within MPMX19_03381at 765.916 kb on - strand, within MPMX19_03381at 765.981 kb on + strand, within MPMX19_03381at 765.982 kb on - strand, within MPMX19_03381at 765.982 kb on - strand, within MPMX19_03381at 765.982 kb on - strand, within MPMX19_03381at 766.023 kb on + strand, within MPMX19_03381at 766.024 kb on - strand, within MPMX19_03381at 766.024 kb on - strand, within MPMX19_03381at 766.113 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.134 kb on + strand, within MPMX19_03381at 766.135 kb on - strand, within MPMX19_03381at 766.135 kb on - strand, within MPMX19_03381at 766.135 kb on - strand, within MPMX19_03381at 766.212 kb on + strand, within MPMX19_03381at 766.213 kb on - strand, within MPMX19_03381at 766.215 kb on + strand, within MPMX19_03381at 766.216 kb on - strand, within MPMX19_03381at 766.216 kb on - strand, within MPMX19_03381at 766.216 kb on - strand, within MPMX19_03381at 766.216 kb on - strand, within MPMX19_03381at 766.382 kb on - strand, within MPMX19_03381at 766.382 kb on - strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.383 kb on + strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.384 kb on - strand, within MPMX19_03381at 766.482 kb on + strandat 766.482 kb on + strandat 766.482 kb on + strandat 766.483 kb on - strandat 766.483 kb on - strandat 766.512 kb on + strandat 766.512 kb on + strandat 766.512 kb on + strandat 766.513 kb on - strandat 766.513 kb on - strandat 766.513 kb on - strandat 766.743 kb on + strand, within MPMX19_03382at 766.743 kb on + strand, within MPMX19_03382at 766.743 kb on + strand, within MPMX19_03382at 766.743 kb on + strand, within MPMX19_03382at 766.743 kb on + strand, within MPMX19_03382at 766.744 kb on - strand, within MPMX19_03382at 766.744 kb on - strand, within MPMX19_03382at 766.744 kb on - strand, within MPMX19_03382at 766.744 kb on - strand, within MPMX19_03382at 766.761 kb on + strand, within MPMX19_03382at 766.761 kb on + strand, within MPMX19_03382at 766.761 kb on + strand, within MPMX19_03382at 766.761 kb on + strand, within MPMX19_03382at 766.761 kb on + strand, within MPMX19_03382at 766.762 kb on - strand, within MPMX19_03382at 766.762 kb on - strand, within MPMX19_03382at 766.770 kb on + strand, within MPMX19_03382at 766.770 kb on + strand, within MPMX19_03382at 766.770 kb on + strand, within MPMX19_03382at 766.770 kb on + strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 766.771 kb on - strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.058 kb on + strand, within MPMX19_03382at 767.059 kb on - strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.065 kb on - strand, within MPMX19_03382at 767.150 kb on + strand, within MPMX19_03382at 767.151 kb on - strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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764,825 + MPMX19_03380 0.16 -1.1
764,826 - MPMX19_03380 0.17 -0.3
764,898 - MPMX19_03380 0.24 -0.6
764,903 + MPMX19_03380 0.24 -2.4
764,903 + MPMX19_03380 0.24 +0.0
764,904 - MPMX19_03380 0.25 +0.3
764,904 - MPMX19_03380 0.25 -0.8
764,970 + MPMX19_03380 0.31 -0.3
764,970 + MPMX19_03380 0.31 -0.6
764,970 + MPMX19_03380 0.31 -0.4
764,970 + MPMX19_03380 0.31 -0.3
764,970 + MPMX19_03380 0.31 +1.7
764,971 - MPMX19_03380 0.31 -0.5
764,971 - MPMX19_03380 0.31 -0.6
765,080 + MPMX19_03380 0.43 +2.2
765,080 + MPMX19_03380 0.43 -0.9
765,080 + MPMX19_03380 0.43 -1.6
765,080 + MPMX19_03380 0.43 -0.9
765,080 + MPMX19_03380 0.43 +0.2
765,080 + MPMX19_03380 0.43 +0.6
765,081 - MPMX19_03380 0.43 -0.8
765,091 + MPMX19_03380 0.44 -0.9
765,092 - MPMX19_03380 0.44 +0.1
765,092 - MPMX19_03380 0.44 -3.1
765,092 - MPMX19_03380 0.44 +0.5
765,092 - MPMX19_03380 0.44 +0.3
765,242 + MPMX19_03380 0.59 -0.5
765,242 + MPMX19_03380 0.59 +0.2
765,242 + MPMX19_03380 0.59 +1.0
765,242 + MPMX19_03380 0.59 +0.8
765,242 + MPMX19_03380 0.59 -1.5
765,242 + MPMX19_03380 0.59 +0.3
765,242 + MPMX19_03380 0.59 +1.4
765,242 + MPMX19_03380 0.59 -1.1
765,242 + MPMX19_03380 0.59 -0.6
765,242 + MPMX19_03380 0.59 -0.6
765,242 + MPMX19_03380 0.59 -0.8
765,242 + MPMX19_03380 0.59 -0.1
765,242 + MPMX19_03380 0.59 -2.0
765,243 - MPMX19_03380 0.59 -1.1
765,243 - MPMX19_03380 0.59 -2.8
765,243 - MPMX19_03380 0.59 +1.4
765,243 - MPMX19_03380 0.59 -0.8
765,243 - MPMX19_03380 0.59 -0.3
765,243 - MPMX19_03380 0.59 +0.5
765,243 - MPMX19_03380 0.59 -0.8
765,243 - MPMX19_03380 0.59 +1.2
765,243 - MPMX19_03380 0.59 -0.8
765,243 - MPMX19_03380 0.59 +0.7
765,243 - MPMX19_03380 0.59 +0.3
765,243 - MPMX19_03380 0.59 -0.7
765,299 + MPMX19_03380 0.65 -0.2
765,300 - MPMX19_03380 0.65 -1.6
765,300 - MPMX19_03380 0.65 +0.4
765,323 + MPMX19_03380 0.68 +0.2
765,323 + MPMX19_03380 0.68 -0.0
765,323 + MPMX19_03380 0.68 -1.3
765,530 + MPMX19_03380 0.89 -0.6
765,572 + -1.1
765,573 - -1.1
765,573 - -0.8
765,573 - +0.5
765,627 + -0.7
765,627 + +0.3
765,627 + +1.5
765,627 + -0.5
765,627 + -0.6
765,627 + -1.5
765,627 + +0.5
765,628 - -1.1
765,628 - -2.2
765,628 - -0.6
765,628 - +0.5
765,703 + +0.5
765,703 + -2.3
765,703 + +0.0
765,704 - -0.1
765,704 - -2.2
765,704 - -0.8
765,762 + MPMX19_03381 0.16 +0.7
765,762 + MPMX19_03381 0.16 +0.7
765,763 - MPMX19_03381 0.16 -0.3
765,763 - MPMX19_03381 0.16 -1.5
765,763 - MPMX19_03381 0.16 -1.3
765,763 - MPMX19_03381 0.16 -0.8
765,858 + MPMX19_03381 0.26 -1.8
765,858 + MPMX19_03381 0.26 +0.5
765,858 + MPMX19_03381 0.26 -1.8
765,858 + MPMX19_03381 0.26 -0.2
765,858 + MPMX19_03381 0.26 -0.3
765,859 - MPMX19_03381 0.27 -0.7
765,859 - MPMX19_03381 0.27 +0.7
765,859 - MPMX19_03381 0.27 -0.6
765,859 - MPMX19_03381 0.27 +0.4
765,859 - MPMX19_03381 0.27 -0.7
765,859 - MPMX19_03381 0.27 -1.4
765,891 + MPMX19_03381 0.30 -0.7
765,916 - MPMX19_03381 0.33 -0.2
765,916 - MPMX19_03381 0.33 -0.5
765,981 + MPMX19_03381 0.41 -0.3
765,982 - MPMX19_03381 0.41 +0.1
765,982 - MPMX19_03381 0.41 +0.4
765,982 - MPMX19_03381 0.41 -2.1
766,023 + MPMX19_03381 0.45 +0.2
766,024 - MPMX19_03381 0.45 +0.4
766,024 - MPMX19_03381 0.45 +0.1
766,113 + MPMX19_03381 0.56 -0.5
766,134 + MPMX19_03381 0.58 -0.9
766,134 + MPMX19_03381 0.58 +0.4
766,134 + MPMX19_03381 0.58 +0.7
766,134 + MPMX19_03381 0.58 -0.5
766,134 + MPMX19_03381 0.58 -0.7
766,134 + MPMX19_03381 0.58 -0.7
766,135 - MPMX19_03381 0.58 -1.8
766,135 - MPMX19_03381 0.58 -0.4
766,135 - MPMX19_03381 0.58 -0.3
766,212 + MPMX19_03381 0.67 -0.6
766,213 - MPMX19_03381 0.67 -0.3
766,215 + MPMX19_03381 0.67 -0.1
766,216 - MPMX19_03381 0.67 -0.9
766,216 - MPMX19_03381 0.67 -0.6
766,216 - MPMX19_03381 0.67 +0.7
766,216 - MPMX19_03381 0.67 +0.9
766,382 - MPMX19_03381 0.86 -0.9
766,382 - MPMX19_03381 0.86 +1.4
766,383 + MPMX19_03381 0.86 -1.9
766,383 + MPMX19_03381 0.86 -1.1
766,383 + MPMX19_03381 0.86 -0.6
766,383 + MPMX19_03381 0.86 +2.2
766,383 + MPMX19_03381 0.86 -2.2
766,383 + MPMX19_03381 0.86 -0.8
766,384 - MPMX19_03381 0.87 -0.9
766,384 - MPMX19_03381 0.87 -0.1
766,384 - MPMX19_03381 0.87 -1.0
766,384 - MPMX19_03381 0.87 -0.8
766,384 - MPMX19_03381 0.87 -0.6
766,384 - MPMX19_03381 0.87 -0.5
766,482 + -0.6
766,482 + +0.5
766,482 + -0.8
766,483 - -1.0
766,483 - +0.7
766,512 + -1.3
766,512 + +0.3
766,512 + +0.1
766,513 - +0.2
766,513 - -0.0
766,513 - -1.3
766,743 + MPMX19_03382 0.17 +0.5
766,743 + MPMX19_03382 0.17 -0.6
766,743 + MPMX19_03382 0.17 -1.1
766,743 + MPMX19_03382 0.17 -1.1
766,743 + MPMX19_03382 0.17 +0.7
766,744 - MPMX19_03382 0.17 -0.9
766,744 - MPMX19_03382 0.17 +0.4
766,744 - MPMX19_03382 0.17 -0.7
766,744 - MPMX19_03382 0.17 -0.2
766,761 + MPMX19_03382 0.18 -1.3
766,761 + MPMX19_03382 0.18 -0.0
766,761 + MPMX19_03382 0.18 -0.2
766,761 + MPMX19_03382 0.18 +0.3
766,761 + MPMX19_03382 0.18 -1.5
766,762 - MPMX19_03382 0.18 -0.7
766,762 - MPMX19_03382 0.18 -0.7
766,770 + MPMX19_03382 0.19 -0.6
766,770 + MPMX19_03382 0.19 +0.4
766,770 + MPMX19_03382 0.19 -1.3
766,770 + MPMX19_03382 0.19 +1.3
766,771 - MPMX19_03382 0.19 -1.2
766,771 - MPMX19_03382 0.19 +0.7
766,771 - MPMX19_03382 0.19 -1.5
766,771 - MPMX19_03382 0.19 -0.9
766,771 - MPMX19_03382 0.19 +0.0
766,771 - MPMX19_03382 0.19 -0.9
766,771 - MPMX19_03382 0.19 -0.5
766,771 - MPMX19_03382 0.19 -1.0
766,771 - MPMX19_03382 0.19 -0.5
766,771 - MPMX19_03382 0.19 -1.4
767,034 + MPMX19_03382 0.38 +0.6
767,034 + MPMX19_03382 0.38 -2.1
767,034 + MPMX19_03382 0.38 +0.5
767,034 + MPMX19_03382 0.38 -0.3
767,034 + MPMX19_03382 0.38 -2.1
767,034 + MPMX19_03382 0.38 -1.1
767,034 + MPMX19_03382 0.38 +0.9
767,034 + MPMX19_03382 0.38 -0.5
767,035 - MPMX19_03382 0.38 -0.7
767,035 - MPMX19_03382 0.38 -0.1
767,035 - MPMX19_03382 0.38 -0.3
767,035 - MPMX19_03382 0.38 -0.2
767,035 - MPMX19_03382 0.38 -1.6
767,035 - MPMX19_03382 0.38 -0.4
767,035 - MPMX19_03382 0.38 -0.5
767,035 - MPMX19_03382 0.38 -1.8
767,035 - MPMX19_03382 0.38 +0.3
767,035 - MPMX19_03382 0.38 -0.3
767,035 - MPMX19_03382 0.38 -1.0
767,035 - MPMX19_03382 0.38 -0.3
767,035 - MPMX19_03382 0.38 -0.2
767,035 - MPMX19_03382 0.38 +0.3
767,035 - MPMX19_03382 0.38 +0.5
767,058 + MPMX19_03382 0.40 -0.1
767,059 - MPMX19_03382 0.40 -1.0
767,064 + MPMX19_03382 0.40 +1.3
767,064 + MPMX19_03382 0.40 -1.1
767,064 + MPMX19_03382 0.40 -0.6
767,064 + MPMX19_03382 0.40 -0.6
767,064 + MPMX19_03382 0.40 +0.4
767,064 + MPMX19_03382 0.40 +0.7
767,064 + MPMX19_03382 0.40 -0.6
767,064 + MPMX19_03382 0.40 -0.3
767,064 + MPMX19_03382 0.40 -1.3
767,064 + MPMX19_03382 0.40 +0.7
767,064 + MPMX19_03382 0.40 -0.3
767,064 + MPMX19_03382 0.40 -1.0
767,064 + MPMX19_03382 0.40 -0.5
767,065 - MPMX19_03382 0.40 +0.1
767,150 + MPMX19_03382 0.46 +1.3
767,151 - MPMX19_03382 0.46 -0.6
767,295 + MPMX19_03382 0.57 -0.8
767,295 + MPMX19_03382 0.57 -0.1
767,295 + MPMX19_03382 0.57 -0.6
767,296 - MPMX19_03382 0.57 -2.4
767,296 - MPMX19_03382 0.57 -0.3

Or see this region's nucleotide sequence