Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03379 and MPMX19_03380 are separated by 104 nucleotides MPMX19_03380 and MPMX19_03381 overlap by 11 nucleotides MPMX19_03381 and MPMX19_03382 are separated by 9 nucleotides
MPMX19_03379: MPMX19_03379 - Periplasmic protein TorT, at 763,484 to 764,560
_03379
MPMX19_03380: MPMX19_03380 - 5-oxoprolinase subunit C, at 764,665 to 765,636
_03380
MPMX19_03381: MPMX19_03381 - 5-oxoprolinase subunit B, at 765,626 to 766,501
_03381
MPMX19_03382: MPMX19_03382 - Biotin carboxylase, at 766,511 to 767,890
_03382
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.707 kb on + strand, within MPMX19_03379 at 763.708 kb on - strand, within MPMX19_03379 at 763.708 kb on - strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.725 kb on + strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.726 kb on - strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.815 kb on + strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 763.816 kb on - strand, within MPMX19_03379 at 764.034 kb on + strand, within MPMX19_03379 at 764.035 kb on - strand, within MPMX19_03379 at 764.259 kb on + strand, within MPMX19_03379 at 764.259 kb on + strand, within MPMX19_03379 at 764.322 kb on + strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.323 kb on - strand, within MPMX19_03379 at 764.340 kb on + strand, within MPMX19_03379 at 764.341 kb on - strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.409 kb on + strand, within MPMX19_03379 at 764.410 kb on - strand, within MPMX19_03379 at 764.607 kb on + strand at 764.608 kb on - strand at 764.616 kb on + strand at 764.616 kb on + strand at 764.616 kb on + strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.617 kb on - strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.618 kb on + strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.619 kb on - strand at 764.825 kb on + strand, within MPMX19_03380 at 764.826 kb on - strand, within MPMX19_03380 at 764.898 kb on - strand, within MPMX19_03380 at 764.903 kb on + strand, within MPMX19_03380 at 764.903 kb on + strand, within MPMX19_03380 at 764.904 kb on - strand, within MPMX19_03380 at 764.904 kb on - strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.970 kb on + strand, within MPMX19_03380 at 764.971 kb on - strand, within MPMX19_03380 at 764.971 kb on - strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.080 kb on + strand, within MPMX19_03380 at 765.081 kb on - strand, within MPMX19_03380 at 765.091 kb on + strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.092 kb on - strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.242 kb on + strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.243 kb on - strand, within MPMX19_03380 at 765.299 kb on + strand, within MPMX19_03380 at 765.300 kb on - strand, within MPMX19_03380 at 765.300 kb on - strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.323 kb on + strand, within MPMX19_03380 at 765.530 kb on + strand, within MPMX19_03380 at 765.572 kb on + strand at 765.573 kb on - strand at 765.573 kb on - strand at 765.573 kb on - strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.627 kb on + strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.628 kb on - strand at 765.703 kb on + strand at 765.703 kb on + strand at 765.703 kb on + strand at 765.704 kb on - strand at 765.704 kb on - strand at 765.704 kb on - strand at 765.762 kb on + strand, within MPMX19_03381 at 765.762 kb on + strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.763 kb on - strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.858 kb on + strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.859 kb on - strand, within MPMX19_03381 at 765.891 kb on + strand, within MPMX19_03381 at 765.916 kb on - strand, within MPMX19_03381 at 765.916 kb on - strand, within MPMX19_03381 at 765.981 kb on + strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 765.982 kb on - strand, within MPMX19_03381 at 766.023 kb on + strand, within MPMX19_03381 at 766.024 kb on - strand, within MPMX19_03381 at 766.024 kb on - strand, within MPMX19_03381 at 766.113 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.134 kb on + strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.135 kb on - strand, within MPMX19_03381 at 766.212 kb on + strand, within MPMX19_03381 at 766.213 kb on - strand, within MPMX19_03381 at 766.215 kb on + strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.216 kb on - strand, within MPMX19_03381 at 766.382 kb on - strand, within MPMX19_03381 at 766.382 kb on - strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.383 kb on + strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.384 kb on - strand, within MPMX19_03381 at 766.482 kb on + strand at 766.482 kb on + strand at 766.482 kb on + strand at 766.483 kb on - strand at 766.483 kb on - strand at 766.512 kb on + strand at 766.512 kb on + strand at 766.512 kb on + strand at 766.513 kb on - strand at 766.513 kb on - strand at 766.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 763,707 + MPMX19_03379 0.21 -1.1 763,708 - MPMX19_03379 0.21 -0.7 763,708 - MPMX19_03379 0.21 -0.1 763,725 + MPMX19_03379 0.22 -0.6 763,725 + MPMX19_03379 0.22 -0.2 763,725 + MPMX19_03379 0.22 +0.1 763,725 + MPMX19_03379 0.22 -0.8 763,726 - MPMX19_03379 0.22 -0.1 763,726 - MPMX19_03379 0.22 -0.6 763,726 - MPMX19_03379 0.22 -1.3 763,726 - MPMX19_03379 0.22 +0.1 763,726 - MPMX19_03379 0.22 -0.6 763,726 - MPMX19_03379 0.22 -0.3 763,726 - MPMX19_03379 0.22 -0.6 763,726 - MPMX19_03379 0.22 +0.7 763,726 - MPMX19_03379 0.22 -0.2 763,726 - MPMX19_03379 0.22 -0.8 763,726 - MPMX19_03379 0.22 +0.9 763,726 - MPMX19_03379 0.22 -0.2 763,815 + MPMX19_03379 0.31 +0.4 763,815 + MPMX19_03379 0.31 +0.1 763,815 + MPMX19_03379 0.31 -0.1 763,815 + MPMX19_03379 0.31 -2.0 763,815 + MPMX19_03379 0.31 -1.0 763,815 + MPMX19_03379 0.31 -0.4 763,815 + MPMX19_03379 0.31 -0.5 763,815 + MPMX19_03379 0.31 +0.8 763,815 + MPMX19_03379 0.31 -0.0 763,816 - MPMX19_03379 0.31 -2.4 763,816 - MPMX19_03379 0.31 +0.3 763,816 - MPMX19_03379 0.31 -0.6 763,816 - MPMX19_03379 0.31 -1.8 763,816 - MPMX19_03379 0.31 +1.0 763,816 - MPMX19_03379 0.31 -0.1 763,816 - MPMX19_03379 0.31 +1.1 763,816 - MPMX19_03379 0.31 -0.3 763,816 - MPMX19_03379 0.31 +1.2 763,816 - MPMX19_03379 0.31 -0.2 764,034 + MPMX19_03379 0.51 -0.9 764,035 - MPMX19_03379 0.51 -0.2 764,259 + MPMX19_03379 0.72 -0.1 764,259 + MPMX19_03379 0.72 -0.2 764,322 + MPMX19_03379 0.78 -0.6 764,323 - MPMX19_03379 0.78 +1.0 764,323 - MPMX19_03379 0.78 +2.3 764,323 - MPMX19_03379 0.78 +0.3 764,340 + MPMX19_03379 0.79 -1.3 764,341 - MPMX19_03379 0.80 -1.5 764,409 + MPMX19_03379 0.86 +0.1 764,409 + MPMX19_03379 0.86 -0.6 764,409 + MPMX19_03379 0.86 -0.0 764,410 - MPMX19_03379 0.86 -0.2 764,607 + -0.6 764,608 - -2.1 764,616 + -0.7 764,616 + +0.4 764,616 + +0.5 764,617 - +0.2 764,617 - -0.3 764,617 - -0.1 764,617 - +0.7 764,617 - -2.0 764,617 - -0.5 764,617 - +1.2 764,617 - -0.6 764,617 - +0.1 764,617 - -2.5 764,618 + -0.9 764,618 + -1.0 764,618 + +0.5 764,618 + +0.9 764,618 + +0.9 764,618 + -0.4 764,618 + +0.1 764,618 + -0.5 764,619 - +1.3 764,619 - -0.9 764,619 - -1.0 764,619 - +0.7 764,619 - +0.4 764,825 + MPMX19_03380 0.16 -1.1 764,826 - MPMX19_03380 0.17 -0.3 764,898 - MPMX19_03380 0.24 -0.6 764,903 + MPMX19_03380 0.24 -2.4 764,903 + MPMX19_03380 0.24 +0.0 764,904 - MPMX19_03380 0.25 +0.3 764,904 - MPMX19_03380 0.25 -0.8 764,970 + MPMX19_03380 0.31 -0.3 764,970 + MPMX19_03380 0.31 -0.6 764,970 + MPMX19_03380 0.31 -0.4 764,970 + MPMX19_03380 0.31 -0.3 764,970 + MPMX19_03380 0.31 +1.7 764,971 - MPMX19_03380 0.31 -0.5 764,971 - MPMX19_03380 0.31 -0.6 765,080 + MPMX19_03380 0.43 +2.2 765,080 + MPMX19_03380 0.43 -0.9 765,080 + MPMX19_03380 0.43 -1.6 765,080 + MPMX19_03380 0.43 -0.9 765,080 + MPMX19_03380 0.43 +0.2 765,080 + MPMX19_03380 0.43 +0.6 765,081 - MPMX19_03380 0.43 -0.8 765,091 + MPMX19_03380 0.44 -0.9 765,092 - MPMX19_03380 0.44 +0.1 765,092 - MPMX19_03380 0.44 -3.1 765,092 - MPMX19_03380 0.44 +0.5 765,092 - MPMX19_03380 0.44 +0.3 765,242 + MPMX19_03380 0.59 -0.5 765,242 + MPMX19_03380 0.59 +0.2 765,242 + MPMX19_03380 0.59 +1.0 765,242 + MPMX19_03380 0.59 +0.8 765,242 + MPMX19_03380 0.59 -1.5 765,242 + MPMX19_03380 0.59 +0.3 765,242 + MPMX19_03380 0.59 +1.4 765,242 + MPMX19_03380 0.59 -1.1 765,242 + MPMX19_03380 0.59 -0.6 765,242 + MPMX19_03380 0.59 -0.6 765,242 + MPMX19_03380 0.59 -0.8 765,242 + MPMX19_03380 0.59 -0.1 765,242 + MPMX19_03380 0.59 -2.0 765,243 - MPMX19_03380 0.59 -1.1 765,243 - MPMX19_03380 0.59 -2.8 765,243 - MPMX19_03380 0.59 +1.4 765,243 - MPMX19_03380 0.59 -0.8 765,243 - MPMX19_03380 0.59 -0.3 765,243 - MPMX19_03380 0.59 +0.5 765,243 - MPMX19_03380 0.59 -0.8 765,243 - MPMX19_03380 0.59 +1.2 765,243 - MPMX19_03380 0.59 -0.8 765,243 - MPMX19_03380 0.59 +0.7 765,243 - MPMX19_03380 0.59 +0.3 765,243 - MPMX19_03380 0.59 -0.7 765,299 + MPMX19_03380 0.65 -0.2 765,300 - MPMX19_03380 0.65 -1.6 765,300 - MPMX19_03380 0.65 +0.4 765,323 + MPMX19_03380 0.68 +0.2 765,323 + MPMX19_03380 0.68 -0.0 765,323 + MPMX19_03380 0.68 -1.3 765,530 + MPMX19_03380 0.89 -0.6 765,572 + -1.1 765,573 - -1.1 765,573 - -0.8 765,573 - +0.5 765,627 + -0.7 765,627 + +0.3 765,627 + +1.5 765,627 + -0.5 765,627 + -0.6 765,627 + -1.5 765,627 + +0.5 765,628 - -1.1 765,628 - -2.2 765,628 - -0.6 765,628 - +0.5 765,703 + +0.5 765,703 + -2.3 765,703 + +0.0 765,704 - -0.1 765,704 - -2.2 765,704 - -0.8 765,762 + MPMX19_03381 0.16 +0.7 765,762 + MPMX19_03381 0.16 +0.7 765,763 - MPMX19_03381 0.16 -0.3 765,763 - MPMX19_03381 0.16 -1.5 765,763 - MPMX19_03381 0.16 -1.3 765,763 - MPMX19_03381 0.16 -0.8 765,858 + MPMX19_03381 0.26 -1.8 765,858 + MPMX19_03381 0.26 +0.5 765,858 + MPMX19_03381 0.26 -1.8 765,858 + MPMX19_03381 0.26 -0.2 765,858 + MPMX19_03381 0.26 -0.3 765,859 - MPMX19_03381 0.27 -0.7 765,859 - MPMX19_03381 0.27 +0.7 765,859 - MPMX19_03381 0.27 -0.6 765,859 - MPMX19_03381 0.27 +0.4 765,859 - MPMX19_03381 0.27 -0.7 765,859 - MPMX19_03381 0.27 -1.4 765,891 + MPMX19_03381 0.30 -0.7 765,916 - MPMX19_03381 0.33 -0.2 765,916 - MPMX19_03381 0.33 -0.5 765,981 + MPMX19_03381 0.41 -0.3 765,982 - MPMX19_03381 0.41 +0.1 765,982 - MPMX19_03381 0.41 +0.4 765,982 - MPMX19_03381 0.41 -2.1 766,023 + MPMX19_03381 0.45 +0.2 766,024 - MPMX19_03381 0.45 +0.4 766,024 - MPMX19_03381 0.45 +0.1 766,113 + MPMX19_03381 0.56 -0.5 766,134 + MPMX19_03381 0.58 -0.9 766,134 + MPMX19_03381 0.58 +0.4 766,134 + MPMX19_03381 0.58 +0.7 766,134 + MPMX19_03381 0.58 -0.5 766,134 + MPMX19_03381 0.58 -0.7 766,134 + MPMX19_03381 0.58 -0.7 766,135 - MPMX19_03381 0.58 -1.8 766,135 - MPMX19_03381 0.58 -0.4 766,135 - MPMX19_03381 0.58 -0.3 766,212 + MPMX19_03381 0.67 -0.6 766,213 - MPMX19_03381 0.67 -0.3 766,215 + MPMX19_03381 0.67 -0.1 766,216 - MPMX19_03381 0.67 -0.9 766,216 - MPMX19_03381 0.67 -0.6 766,216 - MPMX19_03381 0.67 +0.7 766,216 - MPMX19_03381 0.67 +0.9 766,382 - MPMX19_03381 0.86 -0.9 766,382 - MPMX19_03381 0.86 +1.4 766,383 + MPMX19_03381 0.86 -1.9 766,383 + MPMX19_03381 0.86 -1.1 766,383 + MPMX19_03381 0.86 -0.6 766,383 + MPMX19_03381 0.86 +2.2 766,383 + MPMX19_03381 0.86 -2.2 766,383 + MPMX19_03381 0.86 -0.8 766,384 - MPMX19_03381 0.87 -0.9 766,384 - MPMX19_03381 0.87 -0.1 766,384 - MPMX19_03381 0.87 -1.0 766,384 - MPMX19_03381 0.87 -0.8 766,384 - MPMX19_03381 0.87 -0.6 766,384 - MPMX19_03381 0.87 -0.5 766,482 + -0.6 766,482 + +0.5 766,482 + -0.8 766,483 - -1.0 766,483 - +0.7 766,512 + -1.3 766,512 + +0.3 766,512 + +0.1 766,513 - +0.2 766,513 - -0.0 766,513 - -1.3
Or see this region's nucleotide sequence